Sample 3300007614

Overview

Basic Information
IMG/M Taxon OID	3300007614 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114514 \| Gp0125944 \| Ga0102946
Sample Name	Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D1_MG
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	581475011
Sequencing Scaffolds	63
Novel Protein Genes	65
Associated Families	55

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	9
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5
Not Available	18
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas lykanthroporepellens	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → unclassified Desulfobulbaceae → Desulfobulbaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium necroappetens	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	1
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1
All Organisms → cellular organisms → Bacteria → FCB group	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	South San Francisco, USA
Coordinates	Lat. (^o)	37.4962	Long. (^o)	-122.1329	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F002483	Metagenome / Metatranscriptome	555	Y
F003470	Metagenome / Metatranscriptome	485	Y
F003627	Metagenome / Metatranscriptome	476	Y
F004052	Metagenome / Metatranscriptome	455	Y
F004928	Metagenome / Metatranscriptome	418	Y
F005815	Metagenome / Metatranscriptome	389	Y
F007999	Metagenome	341	Y
F008361	Metagenome / Metatranscriptome	334	Y
F012678	Metagenome / Metatranscriptome	278	Y
F012917	Metagenome / Metatranscriptome	276	Y
F017250	Metagenome / Metatranscriptome	242	Y
F018541	Metagenome / Metatranscriptome	234	Y
F018543	Metagenome / Metatranscriptome	234	Y
F019205	Metagenome / Metatranscriptome	231	Y
F021634	Metagenome / Metatranscriptome	218	Y
F023596	Metagenome	209	Y
F026568	Metagenome / Metatranscriptome	197	Y
F029446	Metagenome / Metatranscriptome	188	Y
F030933	Metagenome / Metatranscriptome	184	Y
F036368	Metagenome / Metatranscriptome	170	Y
F037736	Metagenome / Metatranscriptome	167	Y
F042355	Metagenome / Metatranscriptome	158	Y
F047065	Metagenome / Metatranscriptome	150	Y
F048318	Metagenome / Metatranscriptome	148	Y
F048673	Metagenome / Metatranscriptome	148	Y
F049002	Metagenome / Metatranscriptome	147	Y
F049640	Metagenome / Metatranscriptome	146	Y
F049899	Metagenome	146	N
F052687	Metagenome	142	Y
F053306	Metagenome / Metatranscriptome	141	Y
F054044	Metagenome / Metatranscriptome	140	Y
F055778	Metagenome / Metatranscriptome	138	Y
F076055	Metagenome / Metatranscriptome	118	Y
F076224	Metagenome	118	Y
F076890	Metagenome / Metatranscriptome	117	N
F077315	Metagenome / Metatranscriptome	117	Y
F077317	Metagenome / Metatranscriptome	117	Y
F080061	Metagenome	115	Y
F081352	Metagenome / Metatranscriptome	114	Y
F087388	Metagenome	110	Y
F088283	Metagenome / Metatranscriptome	109	Y
F090406	Metagenome	108	N
F092940	Metagenome / Metatranscriptome	107	Y
F093890	Metagenome / Metatranscriptome	106	Y
F094435	Metagenome / Metatranscriptome	106	Y
F095492	Metagenome / Metatranscriptome	105	Y
F095691	Metagenome	105	Y
F096759	Metagenome / Metatranscriptome	104	Y
F098275	Metagenome / Metatranscriptome	104	Y
F099324	Metagenome / Metatranscriptome	103	Y
F099529	Metagenome	103	Y
F101187	Metagenome / Metatranscriptome	102	Y
F103280	Metagenome	101	Y
F103282	Metagenome	101	Y
F105198	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0102946_1000094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	29309	Open in IMG/M
Ga0102946_1000148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	23864	Open in IMG/M
Ga0102946_1000241	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	19266	Open in IMG/M
Ga0102946_1000245	All Organisms → cellular organisms → Bacteria	19106	Open in IMG/M
Ga0102946_1000411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	14948	Open in IMG/M
Ga0102946_1000463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	14139	Open in IMG/M
Ga0102946_1000500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	13651	Open in IMG/M
Ga0102946_1000831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	10754	Open in IMG/M
Ga0102946_1001236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8796	Open in IMG/M
Ga0102946_1002484	All Organisms → cellular organisms → Bacteria → Proteobacteria	6360	Open in IMG/M
Ga0102946_1005599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4163	Open in IMG/M
Ga0102946_1005686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4133	Open in IMG/M
Ga0102946_1006715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	3791	Open in IMG/M
Ga0102946_1007163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3662	Open in IMG/M
Ga0102946_1008436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3363	Open in IMG/M
Ga0102946_1012339	All Organisms → cellular organisms → Bacteria → Proteobacteria	2765	Open in IMG/M
Ga0102946_1015303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2470	Open in IMG/M
Ga0102946_1016460	Not Available	2384	Open in IMG/M
Ga0102946_1016476	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2383	Open in IMG/M
Ga0102946_1021888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2056	Open in IMG/M
Ga0102946_1023570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1979	Open in IMG/M
Ga0102946_1027381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → Dehalogenimonas → Dehalogenimonas lykanthroporepellens	1836	Open in IMG/M
Ga0102946_1030848	Not Available	1728	Open in IMG/M
Ga0102946_1032023	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium Pan216	1697	Open in IMG/M
Ga0102946_1057473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1272	Open in IMG/M
Ga0102946_1058417	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobulbaceae → unclassified Desulfobulbaceae → Desulfobulbaceae bacterium	1262	Open in IMG/M
Ga0102946_1075137	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
Ga0102946_1086170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1047	Open in IMG/M
Ga0102946_1088066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1036	Open in IMG/M
Ga0102946_1092355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1014	Open in IMG/M
Ga0102946_1094156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1005	Open in IMG/M
Ga0102946_1095162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1000	Open in IMG/M
Ga0102946_1097228	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium necroappetens	989	Open in IMG/M
Ga0102946_1097482	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
Ga0102946_1101468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	970	Open in IMG/M
Ga0102946_1107908	Not Available	943	Open in IMG/M
Ga0102946_1110440	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
Ga0102946_1126712	Not Available	875	Open in IMG/M
Ga0102946_1151616	Not Available	806	Open in IMG/M
Ga0102946_1172678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	759	Open in IMG/M
Ga0102946_1182997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
Ga0102946_1208556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	697	Open in IMG/M
Ga0102946_1212075	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	691	Open in IMG/M
Ga0102946_1225728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	672	Open in IMG/M
Ga0102946_1225896	Not Available	672	Open in IMG/M
Ga0102946_1238143	All Organisms → cellular organisms → Eukaryota → Sar	656	Open in IMG/M
Ga0102946_1241281	Not Available	652	Open in IMG/M
Ga0102946_1274201	Not Available	617	Open in IMG/M
Ga0102946_1280624	Not Available	610	Open in IMG/M
Ga0102946_1280814	Not Available	610	Open in IMG/M
Ga0102946_1293140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	599	Open in IMG/M
Ga0102946_1340070	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	561	Open in IMG/M
Ga0102946_1349941	Not Available	554	Open in IMG/M
Ga0102946_1354706	Not Available	551	Open in IMG/M
Ga0102946_1361567	All Organisms → cellular organisms → Bacteria → FCB group	547	Open in IMG/M
Ga0102946_1361816	Not Available	546	Open in IMG/M
Ga0102946_1379610	Not Available	535	Open in IMG/M
Ga0102946_1381027	Not Available	534	Open in IMG/M
Ga0102946_1385482	Not Available	532	Open in IMG/M
Ga0102946_1388401	Not Available	530	Open in IMG/M
Ga0102946_1389072	All Organisms → cellular organisms → Bacteria → FCB group	530	Open in IMG/M
Ga0102946_1415197	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	515	Open in IMG/M
Ga0102946_1433627	Not Available	506	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0102946_1000094	Ga0102946_100009410	F003627	VDRETARKNMSSALVAGGFAAAVFALAFVAAFLYIAQA*
Ga0102946_1000148	Ga0102946_10001488	F048673	MRTYAFILILVAIAASQPHHWLSAVMTAITHCMGR*
Ga0102946_1000241	Ga0102946_10002415	F055778	MLSNVDFPEPELPTIRTISPFSIENDTSSRALTLLSPSP*
Ga0102946_1000245	Ga0102946_100024514	F098275	MAARSEKQPLMAPGNEAEWARLNAEKREALTPPPDTPIGELLRRGQHLSAQGANLQRAVERANGDRRS*
Ga0102946_1000411	Ga0102946_10004117	F030933	VLIKQIAIMNKDPDSDEIRQKRAQAVKTAWVLGIIALAIFATFIGSAVIGR*
Ga0102946_1000463	Ga0102946_10004634	F018541	MYTPKMRSFWVDFPLTDEQYSKLELRWRRRQNFYEIKNEPPADIRIRSFCSFGGEDYKILSLEARGDIDVYNETLKIMDQWIIDTLGEF*
Ga0102946_1000500	Ga0102946_100050013	F049002	MAKANYDEAQTELIRAIQEDAPCTFDDPIPVLVTLDNGVEYQGLAYEVQPESSNFPSGLVMVRTGNTDIGVPVSYISGR*
Ga0102946_1000831	Ga0102946_10008314	F053306	MDCMMQLLARIKGNYLFATTVLLTLSACGQPEPITYESLVWVNNYYVEHPVASLSATAGGWLFRGAREFGPEIRIGFLIPGPMNPDPAKRQAVLESICPAKSEPIWQTLTSDNKLVINVWTEDKKFKDSKTC*
Ga0102946_1001236	Ga0102946_10012367	F002483	MAIGFLRRRPKKRQQRTAAPWPSTPLPPRRPASYYLVAGVALDRELERLCGLPVFADGALATRRPQLKVRRASKRPNKLGFAVPAEFRLQVTAYPGIGPGDILETLLHELTHLHVGRAAEAHAWHGRTFKRALANAMEQAYGVEIPPPPHTRHGVYAAAIDASRSPAQSGGEG*
Ga0102946_1002484	Ga0102946_10024843	F105198	MKNVILALCLVLFAGQASAYFTWGMGSQTCNLYVSAKAEYDHARDQRTHLAHLNWIKGFITGINWSRESNIARDLSIETVDQWINTYCRANLDASIGEASAALVVDLEKQGKSIESP*
Ga0102946_1005599	Ga0102946_10055993	F017250	VKHSALTTIPTPAKPALSEEQRAERLRLLAERLRSPDGLDRDTLKHVEQLTDTER*
Ga0102946_1005686	Ga0102946_10056867	F003627	VDRETSRRDIRAGLLAGGIAATVFGLSFVAAMLYIAS*
Ga0102946_1006715	Ga0102946_10067156	F105198	MKKFLIALCLVLFSAQAPAYFTWGIGEMPCNRFVSAKIEFEHARDQRTHPAQLNWIKGFITGINWSHDSNIARDLTIETVDNWIDDYCRNNLNDSIAEASAALVIYLEGDSD*
Ga0102946_1007163	Ga0102946_10071636	F076055	MMMRMTRTTVDVDDRALDAARRELGTEGLSETVNVALREATRRRVLRGFDVLRDIDGTPEEVREGRERL*
Ga0102946_1008436	Ga0102946_10084364	F053306	MMQLLVKVKKEFLIAAATLLSLSACGQPEPITYESLVWVNQYYVDHPVASLSATAGGWLFRGAREYGTEIRVGFLVPTPMNPDPAKRQAVLETICPARSEPIWQTLPKDNKVVINVWTEDRKFKDTKTC*
Ga0102946_1012339	Ga0102946_10123393	F026568	MYDPYYHYTRGVLYYDENHFTFTAYRMPYLELDSKSWETEKAFKADYRRVVNKKYAT*
Ga0102946_1015303	Ga0102946_10153033	F095691	MLQQDGSIRIAWQADGFEAIYVRARFRPAPDLDGFARTVADVALLERTLPELRTALRKEYPGQFDLVTDEPISKPGRVIISFHPPPGQPNPDPW*
Ga0102946_1016460	Ga0102946_10164603	F090406	MKCERNVLWLIVVLAGLAACSTTLTSVDKEGGNVYALPPTVVDQMLKDAMSTEISTGTLRRGSTPYPSYLGEVTWGSLDKDTITASARPAKGRKLDGTIIDGYVFEVSRKGTAPATGEPTVKRIFAKLQKDAELTGAGVAFVEFTD*
Ga0102946_1016476	Ga0102946_10164761	F105198	MKNVFLALCLVLFAGQASAYFTWGMGSQTCNLYVSAKAEYDHARDQRTHLAHLNWIKGFITGINWSRESNIARDLSIETVDQWIDAYCRANLDASIGEASAAMVVDLEKQGKPQ*
Ga0102946_1021888	Ga0102946_10218883	F019205	MFDSRKSFSHKAADAADLVIDFATLGEYGLEPVEQQPRACEGRNRISRPRSTGAWSAAIARFATQA*
Ga0102946_1023570	Ga0102946_10235703	F005815	MTMNTTRLTMYWTAGEAATVIDFLDTLRETLWETYGEQITRMHREIYDDCTPDTNQCEFEFNDDIPF*
Ga0102946_1027381	Ga0102946_10273811	F087388	MAKTVSELAREIISRLDQGEPLESAISMVLTGEGVEDDVLVELQVAGLRDAVVHESFHELLDWHANFGGLAEFLEIDEAIHRTAERIGHDFDGDLPDHPAETGPRLVH*
Ga0102946_1030848	Ga0102946_10308484	F036368	ISTDMQASAAMHGCRFHRAWYASDGSEFVAMAKWDSREGAHAFFEEWNINDEPGETMTVLEGDIGLVPEP*
Ga0102946_1032023	Ga0102946_10320232	F049640	MARHPAIKLELLPHERAALLKWNYTPEVRAQLEACASSDNIETITITSVDANWLASDLTHAIVKRGCRDQDVIDLSERLEYVDQSGDGSLD
Ga0102946_1057473	Ga0102946_10574732	F048318	MPKTDEEVFVMATVENVHLAITASSTKPDYSDIAYSYELHPSELDCAWKREYTMTAVLCGEDVIEDDVLAWGLDEHKVKFDDTGPCEPKKVGRVFEVETKVLDEDWFGDDEVYLIVEARSGLRPDAAGESMVMRKSNTVIGDF*
Ga0102946_1058417	Ga0102946_10584173	F099324	FVIMLGWVLVLSGCAAIDKGHNIEGEDYRGGYPPRGGYTRTTQHKALVSEACNIEANNLVGDKDFMADDRARRVYFSQCMQRNGYNAAGNYVGIPPK*
Ga0102946_1075137	Ga0102946_10751372	F004052	MEVPDMRILTTIISLALITLLAACDQQSSISDIDPMLGVDCFESHRAELPPGTQYEGIKNLTDNVLTIRIMNGVEVVTMDCGLNPDGTLPGVNR*
Ga0102946_1086170	Ga0102946_10861702	F092940	MKMKMKLFALLAVLALVFGISSSAHAIIWGTEDLNGDYPNVVSVRGIDEANNSASYSCSGSLLHIDDDKVVILTAAHCTDGWTALIAAGILDSVGVSFDQNNVIGGSFSDATYYVRGGVPISFPQKDAPFEKFDYGMVVFSPNATNSVG
Ga0102946_1088066	Ga0102946_10880661	F003470	QELKQNLSKVMRSFGRSCRGQGKVFVKLVRQTEQQLLDVGETISTLARQAQASLEQTTTLSETQRAWFNEHLTTAMRHHEQIRQQSKQLTQGKKLAHFKVVNAYDPTIAPIIKGKSNCPAQFGRKPGIMSEPASGYIFANLTPKGNPSDESYVLPLIDKVEQAIGRAQQGPKRSIHSLAGDLGVNDPVLRQALHERGILSVGIPKTVEPINAHPSAQEVLDILNEADLNRKRTPHQVHLACASGFSRPVVESHIAALLSRGAGSVRYKGMEGAVVQQGMTVMSYNGAVLVRIRQQKLTKRAQKFRRLLGLKPPKVNEINQEKN*
Ga0102946_1092355	Ga0102946_10923551	F094435	MNFNWVLLPAACLLLFPITQIAAQEQAVLGQGNVSCDAWLIDRRENNAQASGRIAWILGYVTAFNQYGSKPAGDVSAGMDTDEIMVWIDDHCEQHPDDNLYRASAAFVEDFRQKLGR*
Ga0102946_1094156	Ga0102946_10941562	F007999	MNEQARQTAQRGEQARRNLVNALRECGELSEAVEHFEGDDLLDVLIYLDGLRFVMAESGQLLQGVVRGFDPGDIDGSR*
Ga0102946_1095162	Ga0102946_10951622	F030933	MINDHQTDELRHKRAQAVKTAWILGIIALVIFATFIGSAIIGR*
Ga0102946_1097228	Ga0102946_10972282	F029446	MLIVFILVTGTVVGLLPRLLHIDKTFSVTNVVIGIVGALVGAFLGFGDTPLLLKYPFLDEKTLMVAASILFVSLKVFATR*
Ga0102946_1097482	Ga0102946_10974822	F023596	ASKKMTSKSLQAILFVGATIIALLFLKLMFDMSRSMSQMTGFVGAMSRDVREMNESMRTMNDSLLRMEKSIDGMGRAFSQGSEQFQQWNPGGMMQQVLPGSGKRTR*
Ga0102946_1101468	Ga0102946_11014682	F002483	GLPVFADGPLARHRPLLKVRRASAPPNKLGFAVPAEFRLQVTAYPGIGAADILETLLHELTHLHVGRAAEAHAWHGRTFKAALAQAMREAYGVEIPPPPHSRHGIYAMEIGASGSASARSTAQSGDDD*
Ga0102946_1107908	Ga0102946_11079082	F103282	LTGLYICIAIAFVILVLKLSVIDSWSWWQVLLPIGQFFGFAVTHIAVTFVYLSFAHFPERPDGDEAEILESRTINAHCLAAMPFFVIFGDNMVCWI*
Ga0102946_1110440	Ga0102946_11104401	F012917	ILNGMILFKFLRFPLNDCGYFEKYESFSELNRTWDKKRHLKRKRWSQE*
Ga0102946_1126712	Ga0102946_11267122	F054044	MISKYYSNSETFSLPADRLGISSSVGILVLGLAITALIFLFLDSSFRSAADQEECLQLVRALGLNSLSLVPSGRPLRNPGAIDPSIDLRFDPKLWRTQK*
Ga0102946_1151616	Ga0102946_11516162	F037736	QLDGLQILWLLANPLRTHGIGESASKTFTGWLLMGAAATNRIWWLDTNPFTGLLLHPKSYRIMHLPFVHSNVCLF*
Ga0102946_1172678	Ga0102946_11726781	F002483	LIPLKRPPAYYRVAGIDLMAEMERLRGLDLFAAGPLAAREAPALKVRRATRRPNRLGFAVPSEWRLQVTAYPRIRPGDALETLLHELVHLQVGRQPGGHAWHGRVFKLTLAAAMSEAYGVLIPPPRSTVHGAYAEAIERSSAADPQLALAV*
Ga0102946_1182997	Ga0102946_11829972	F098275	MATRPRDKPLLAPGNEAEWARLNAEKREALRPPPDTPIGELLRRGQHLSAQGAKLLRAVERANGDRRS*
Ga0102946_1192730	Ga0102946_11927301	F076890	MLVAMGALGTSACSTLEVDDYCRYSETRSIRTADPESLALVLGVQAGRARQTPFVVIRSLSESTPGASVTLHTTPAAHPMPMGLDESRCARVDWSTYTLAVDPEEWNAFWQDDTNSPFEIGIAFLEGFHPLPLSAFGASILDSDSADYLVSCG
Ga0102946_1208556	Ga0102946_12085562	F004928	MEQVLRGIENEPEHTVEIIVHIAETLQQQQRGNLVASLGNNDGIVAAEFCPLRYHLMLVRYDRDLYSSQDVLAKVKSHNVNARLIGPV*
Ga0102946_1212075	Ga0102946_12120751	F008361	ATKELEKATLAVENAESSKARLDASVELKKATARLEAMNYLS*
Ga0102946_1225728	Ga0102946_12257282	F088283	MKTKVAIILASLACTAACATNDNVAGTYAPSCVAFEGDTIELADGRFTWDKFTDEVSVDKAGNEVDPFPGFPVRGTYTVEDDVVSLVTNVGELAAELYLVHRPGQVYLLTKAEFDAWQSSGTVPDCALLLGAGE*
Ga0102946_1225896	Ga0102946_12258961	F021634	MGEHTMISDSFSTAQLSGRRPWAIAGSIALLAIGGRSAVAQSDLTQFDVTQFDDHGAFFLEHDARTPPMMFREVWQQPPADGPLNDENRRITPDALTNPDLEYRLYGPDASNIQVTSHNGIQDLWNGYT
Ga0102946_1238143	Ga0102946_12381433	F012678	MLNQHSLEEIADIHNLLRDIKEEYNEGIKPILIKNSPKLFKNPHTVPKLKKIQI
Ga0102946_1241281	Ga0102946_12412813	F077317	MEELLTKPADETVWYENEQPIKEFLESFRKPAILDVDQPTEELSWLK
Ga0102946_1274201	Ga0102946_12742011	F093890	GTDRDASEYGGNLVRSRRQMFMVLLFCVVFPVYCTTELLANPTFLNRQAYPLQLGLTDIGQFNKNDLKTFEVWTQWDNPSNKKIVVKLIFTFMDRDSADSQLGEDGKDDLLMTVKETVTIPEQVNNWGKYFQLTAIGHKLNQGFDHPAEGAGLELYLDAQVISVQHLSME*
Ga0102946_1280624	Ga0102946_12806241	F081352	MIRLIRKISAITLACLLVLNVATGAAAVAGHCPSSMGSSSPIDMDHCQGMLNFAFPMQGCCGECRDIFCDLMKNPLQDANAVNTSPFQGSCYPIFLGTVDPIAESGAWIALSEPRYLFSAAPAWGRIPLYIEHLSLII
Ga0102946_1280814	Ga0102946_12808141	F096759	LQSTPGQLVFGRDMIFNIKHTANWEYIKQRKQQIINKSNQRENAKRKEHVYRVGEKVLLSKGTEFKYETSFSGPHEILRVNDNGTVRLQVKAVADEYNIRRLYPYYSATDLDHGGECNMRNSRKRRRELN*
Ga0102946_1290934	Ga0102946_12909341	F101187	SINVEPEIVSNTQCDMNYACLSGKVVCDVEPFVDREVQLLRCRDERSCAHKKKYQGRFICTCPVNMASLNLN*
Ga0102946_1293140	Ga0102946_12931401	F012678	MLNQHSIEEIAEIHNLLGDIKKEYEHGIKPILINNSPKLFKNPHTVPKLKKIQV
Ga0102946_1340070	Ga0102946_13400702	F018543	LPTKECGMTVMPNQSAAANRRPAGQADGSDNLFATVAADRAFPAAVAELGR*
Ga0102946_1349941	Ga0102946_13499412	F049899	LVLAVGFQTSAQNIVQAIIIIASVGIVEAGRRIRFEWIRFKFWITSPDVEFRIRTTFTRTMSRLGLSKLLDVAPQVRWRWRTAYLRLKKRLEITE*
Ga0102946_1354706	Ga0102946_13547061	F095492	AAMLCPVLALGNNTEAVDTKAKLEALVDEYIACCEAKSALISSRSENIRRSAMRSCKIASYCKHSKAELVEVMLRNNIEPKAYKVRHFLNGRFNRTLQAKE*
Ga0102946_1361567	Ga0102946_13615672	F052687	LTIVLFLTALGGGTYYLLSMETVEDVKVTGKLQISEQYGSYVMASQSEGANYYAVIEGKVKNNLGKSIKNVFIKYVISGQETSATIFDLAPGQELHFNTSGVATTGSSPEYDFVGIYYD*
Ga0102946_1361816	Ga0102946_13618161	F103280	MKKLVGFITVSAIWLLPVILPEIQAQQTATPPSTTASSPAITTEELKSRRMAIESMTDIDATVKTDSLKYIDQAISHAELALSTNHKANEFLQLIQTAP
Ga0102946_1379610	Ga0102946_13796101	F077315	LSRFACCQVWALLLLLPLLIPAQAAEALKPDALPLPKARAALERLQDQFATAQTATAQELRTLKKEIARVRSSAQDCVQQVQPKIEILDSELAVFQPAKSKDTQAKTAGETQPAKQPEAPFSPAISRQLQDLQSRKDSLEGRMAICKLMLLRSNDLESEVDDYLSSLQTRQLLTRGPP
Ga0102946_1381027	Ga0102946_13810271	F099529	MNAFDILINILLVLIILYILWHGYVVVVAFRWKQADKLISRALAPRDEVL*
Ga0102946_1385482	Ga0102946_13854821	F087388	MAKTISELAREIMERLDRGEPLDQALTLALADDEIDEQTRLELEVAGLRDAVVHEAFHELLEWHASFGGLAEFLEIDEAIHRTADRVGHDFDEDVSTHQDDPAARLVH*
Ga0102946_1388401	Ga0102946_13884012	F042355	MSSDLKKINKLKKNSRRNTNIQEPKFVERLIKISRV
Ga0102946_1389072	Ga0102946_13890721	F076224	YNFIPVLAEKKINWTEKQIEANEEKIKEFTLKIKYDSTFKYSVANSNSHSFNVVVDSNVCRVDFQIPPIPESAFSEIGVMDPIIEEATNNIHFYAYKIPKMEKSKSEIKIEYYNDDSVYSVVVDYNVLNIDSIVQATAGTDMLNLDRFKPVRPQDDTMLIKYEFDKNYYRYYSDDE
Ga0102946_1415197	Ga0102946_14151971	F080061	LFGIFNFGHCDLPFDLAQGGELVKPFGIYDLSFEI
Ga0102946_1433627	Ga0102946_14336271	F047065	MTDLLNKFSEAAKVVSSSKTHMWECVNRAYVDHLSDISRDSLPEEIQIFYDSIKLRITSVEVLGHIDNDEASYIANDIMYMADVISSGLRKP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300007614: Soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_D1_MG

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences