Sample 3300025746

3300025746: Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8d (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300025746 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0133460 \| Gp0293434 \| Ga0255241
Sample Name	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8d (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	102470614
Sequencing Scaffolds	51
Novel Protein Genes	59
Associated Families	54

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	2
Not Available	31
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	2
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C493	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater river biome → river → river water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Oregon
Coordinates	Lat. (^o)	46.1812	Long. (^o)	-123.1834	Alt. (m)	N/A	Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000191	Metagenome / Metatranscriptome	1666	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F001758	Metagenome / Metatranscriptome	640	Y
F001904	Metagenome / Metatranscriptome	619	Y
F003666	Metagenome / Metatranscriptome	474	Y
F004916	Metagenome / Metatranscriptome	418	Y
F005388	Metagenome / Metatranscriptome	402	N
F005505	Metagenome / Metatranscriptome	398	Y
F009604	Metagenome / Metatranscriptome	315	Y
F010913	Metagenome / Metatranscriptome	297	N
F012966	Metagenome / Metatranscriptome	275	N
F014838	Metagenome / Metatranscriptome	259	Y
F016268	Metagenome / Metatranscriptome	248	N
F018164	Metagenome / Metatranscriptome	236	Y
F018680	Metagenome / Metatranscriptome	233	Y
F019635	Metagenome / Metatranscriptome	228	Y
F020535	Metagenome / Metatranscriptome	223	N
F021287	Metagenome / Metatranscriptome	219	Y
F023334	Metagenome / Metatranscriptome	210	Y
F025267	Metagenome / Metatranscriptome	202	N
F025806	Metagenome / Metatranscriptome	200	Y
F027783	Metagenome / Metatranscriptome	193	Y
F030417	Metagenome / Metatranscriptome	185	N
F031366	Metatranscriptome	182	Y
F032191	Metagenome / Metatranscriptome	180	N
F033411	Metagenome / Metatranscriptome	177	Y
F034152	Metagenome / Metatranscriptome	175	Y
F034900	Metagenome / Metatranscriptome	173	Y
F038151	Metagenome / Metatranscriptome	166	Y
F039116	Metagenome / Metatranscriptome	164	Y
F042808	Metagenome / Metatranscriptome	157	N
F042867	Metagenome / Metatranscriptome	157	Y
F044306	Metagenome / Metatranscriptome	154	N
F045072	Metagenome / Metatranscriptome	153	N
F045698	Metagenome / Metatranscriptome	152	N
F046255	Metagenome / Metatranscriptome	151	Y
F048833	Metagenome / Metatranscriptome	147	Y
F048851	Metagenome / Metatranscriptome	147	Y
F053238	Metagenome / Metatranscriptome	141	N
F060123	Metagenome / Metatranscriptome	133	Y
F060847	Metagenome / Metatranscriptome	132	Y
F062686	Metagenome / Metatranscriptome	130	Y
F068610	Metagenome / Metatranscriptome	124	N
F068783	Metagenome / Metatranscriptome	124	Y
F069842	Metagenome / Metatranscriptome	123	Y
F070194	Metagenome / Metatranscriptome	123	N
F080126	Metagenome / Metatranscriptome	115	Y
F085156	Metagenome / Metatranscriptome	111	N
F085613	Metagenome / Metatranscriptome	111	N
F085736	Metagenome / Metatranscriptome	111	Y
F088802	Metagenome / Metatranscriptome	109	Y
F089854	Metagenome / Metatranscriptome	108	N
F089864	Metagenome / Metatranscriptome	108	N
F089879	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0255241_1000097	All Organisms → cellular organisms → Bacteria	8408	Open in IMG/M
Ga0255241_1000140	Not Available	7570	Open in IMG/M
Ga0255241_1001734	Not Available	3061	Open in IMG/M
Ga0255241_1002631	Not Available	2582	Open in IMG/M
Ga0255241_1003402	Not Available	2317	Open in IMG/M
Ga0255241_1006036	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	1803	Open in IMG/M
Ga0255241_1009027	All Organisms → Viruses → Predicted Viral	1496	Open in IMG/M
Ga0255241_1010096	Not Available	1414	Open in IMG/M
Ga0255241_1012603	Not Available	1266	Open in IMG/M
Ga0255241_1018276	All Organisms → Viruses → Predicted Viral	1039	Open in IMG/M
Ga0255241_1018528	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
Ga0255241_1020471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	975	Open in IMG/M
Ga0255241_1020595	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	972	Open in IMG/M
Ga0255241_1023839	Not Available	896	Open in IMG/M
Ga0255241_1026739	Not Available	841	Open in IMG/M
Ga0255241_1026868	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	839	Open in IMG/M
Ga0255241_1027000	Not Available	836	Open in IMG/M
Ga0255241_1027239	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	832	Open in IMG/M
Ga0255241_1032019	Not Available	760	Open in IMG/M
Ga0255241_1032608	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C493	753	Open in IMG/M
Ga0255241_1034084	Not Available	734	Open in IMG/M
Ga0255241_1034780	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	725	Open in IMG/M
Ga0255241_1034815	Not Available	725	Open in IMG/M
Ga0255241_1037367	Not Available	696	Open in IMG/M
Ga0255241_1038154	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	688	Open in IMG/M
Ga0255241_1042161	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Coccolithaceae → Coccolithus → Coccolithus braarudii	649	Open in IMG/M
Ga0255241_1042929	Not Available	642	Open in IMG/M
Ga0255241_1043164	Not Available	640	Open in IMG/M
Ga0255241_1044973	Not Available	625	Open in IMG/M
Ga0255241_1047205	Not Available	608	Open in IMG/M
Ga0255241_1047409	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	607	Open in IMG/M
Ga0255241_1047770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	604	Open in IMG/M
Ga0255241_1047918	Not Available	603	Open in IMG/M
Ga0255241_1048164	Not Available	601	Open in IMG/M
Ga0255241_1049484	Not Available	592	Open in IMG/M
Ga0255241_1049905	Not Available	589	Open in IMG/M
Ga0255241_1051426	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	579	Open in IMG/M
Ga0255241_1051798	Not Available	577	Open in IMG/M
Ga0255241_1052410	Not Available	573	Open in IMG/M
Ga0255241_1052593	Not Available	572	Open in IMG/M
Ga0255241_1052600	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	572	Open in IMG/M
Ga0255241_1054944	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	558	Open in IMG/M
Ga0255241_1055984	Not Available	552	Open in IMG/M
Ga0255241_1057476	Not Available	544	Open in IMG/M
Ga0255241_1058141	Not Available	540	Open in IMG/M
Ga0255241_1058643	Not Available	538	Open in IMG/M
Ga0255241_1058899	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium	536	Open in IMG/M
Ga0255241_1059824	Not Available	532	Open in IMG/M
Ga0255241_1064141	Not Available	512	Open in IMG/M
Ga0255241_1066124	Not Available	503	Open in IMG/M
Ga0255241_1066178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	503	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0255241_1000097	Ga0255241_10000974	F038151	VEYSVRTGRTFLLVWEEPGEGITGAVTVEFIDYPRERVAHVNLMGGKGVVRDYVFDEAKDWMKSFGATKAQCWAKGSLVQMYEKMGMTNTHQVMRINL
Ga0255241_1000140	Ga0255241_10001402	F089864	MRTLLLALLIVLLGIGTSVATFMWGGKVARARIKGVMAQIIETSQVAAAIKSPEQDVLQDPPDVQPAGNERQTELSLAALEAMRETAEPGSLRFDNPDVVNLLNQMRTRQEYQDSREKRLKELEERIRLEMQNLNMATQWISQARIAQDNLLTNRITYLRVEEQRSLLEHGRRLTSLQPPQAVAILTNYTPDEIARTLTVINSTNAASLLGALVGTGESGVRLAADISRRMMHISLRSPDGTNAASASTTP
Ga0255241_1001734	Ga0255241_10017341	F060123	MAFSGNISTTTFNALKVVDHAFRRCRLAAQNITSEMQAYALESLYLMLSEMANIKTPS
Ga0255241_1002013	Ga0255241_10020132	F000191	GNLVNQHVRFIETGEKDPLMTYENALITQSRAGEIPPID
Ga0255241_1002631	Ga0255241_10026314	F060847	VTVLLNAAGQPEPPTHVVARLRALHAGLFMKFLEQTGEHWAICLRWSPEDTRWEWVQRGETDPEMAYDIIGYLPMLCSIDEAPAYLERTFR
Ga0255241_1002733	Ga0255241_10027331	F000191	YTVGNLVNQHVRFIETGEKDPLMTYEKALITQSRPGEIPSID
Ga0255241_1003402	Ga0255241_10034022	F085613	LMEDPLKALVLAEAVKNPDKFKRRGQSTIEEAIREKYNLGEGEYYATALLKSDAIDAIEMIEKTKKDVETVKNPYTFAKELKSQTEKQIAERQSIALAEAETYAKQLKEVPYKFGDTEVSLQVSNEEVESILKSQYAGYLGQAFDTTTKEGKQAVREWLTNQVLIHKVQSGDLGVQIAKSLTAQTEKKVVKEVYNGQPKTPNRVGKTAVDQKGLTAAQRDLMERGIPFPSQALKS
Ga0255241_1006036	Ga0255241_10060361	F042808	EKNRLVDGLLTSEGGVDSGFSPSLIQPNQLAWAVNTTVRGGFPKARPGIWLKGLTFPDPTVVTDSGYYNAAVQDAFKTGYFQGCGAYVNDDGTPYLFASISGKMFRIDIENNFLVSDQTPQGGTFTVDTRGRVANIATYTCSVPHGLFPGMVVRLPERVGASFPEGFFGDFVIQNTPTPTTFTTYSPGVDAGPLLGPSFTGYWLQANNPNADHVFFQQAENWLIVQDQLNAPYLFDGTTFRRATGEEVPVGGPMAYGKGRLWVASGSEYYGGDLVYGDPAYGRNSVIRFTENTFLNEGGAFAVSNGPITGLAFGANLDTSLGDGDLLVFTPTATYAFAAPVDRDVWKDLSYPIQRFALLNFGSFNHESIVPMNGDLIFRAQDGIRSLIYARRDFTEWGNTPISRQVVRALAYDTEFYLKAASSVNFDNRMLMTIQPQKVNGRGVVHRGLVVMDFDLVSGMGRKLPPAWEGVWTCADILQMLTVRVRNSERCFVFGLDQGKIGLYEVTRTGQFDFDGFDDSPIEWIIETRSLTFAEPANKKRLMSAEQWYDQVMGNIEAKVYFKANEGECWHPWAEIKDCAKYRNCEPGEVACPPAVINCQ
Ga0255241_1009027	Ga0255241_10090275	F019635	MPQIRIYIDGDTEQPTPQAEPTPDLQAEIDRINRTLCDVVRRIVKIESDVRGVRMRLIEDDAEGQVP
Ga0255241_1010096	Ga0255241_10100961	F005388	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFSIKAVADSSFTQVETIPSGVNELPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRYADQGSGAGAELLKRIGANRVIKNFRHVPNLFPPRYTYAGGKYTLVQPFTSANGTKGTVFSVNPSWTTAPFEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFIHAPEPIFTNQGMTIIFRRCTGALTQIICS
Ga0255241_1012603	Ga0255241_10126032	F089879	MGFQSESIISAASQRFGVIDYSRWQAIRWQWYSYVTYPAAGATELNFFGQVAGQAGVTLQDTNLPKAGSFGQTHFQLKSISTDIQIAQNDVDDFTLANQATLDTRATASDYLGGFVQAGVLNFSVGARPQKKIKKEMV
Ga0255241_1018276	Ga0255241_10182762	F045072	LFESIRDKVEGALASGAPVVSYTVDGQMVQKEATSTWLAELDARIADLRRQASGGISRSRNLVRFRNV
Ga0255241_1018528	Ga0255241_10185282	F085156	DGAGVAAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255241_1020471	Ga0255241_10204711	F068610	SLQLHTDKETFRYLAKSNSQLTDSWRFGEFAPAAKEFYKFGFMGFVGDFMVKVLQFPLRFNATATAGNYTLVLPYKNVAASEGLRSEFNADYDRAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVNGACPVIIAGCAEDPGNPAQDYNSANGVCNPTLQFTAVANDAGNFVIGTTGILCDGNIVTNAGISEASVAALVAALQVVWDAEFGAASGTWSVVSGNVIQLASSAFPTATEVVPCTNVTLEFAI
Ga0255241_1020595	Ga0255241_10205951	F034152	MRLGLGLGLGIDQFISGAGGGADLPIMRRDLLREDEGFLLLEDGTSKIVITFGTFDSLDLENGDFLLQEDNGKLIIQ
Ga0255241_1023839	Ga0255241_10238392	F009604	MINCGCGNEIHPERVELGYKVCLNCGDKAALKNKKYGYMHFGHKTAGSIVVTSKQAVDNYLKVSKRMNKGSNMGYASRLTSSF
Ga0255241_1026099	Ga0255241_10260991	F044306	MFLLSFSSMAQEQITMSLEWLSSTQTTADFQVRLTNTGNLPVKFNSIIVRGKHAENLMTQGASLSWTALNNNTNSSWNNWPNFTNVLPYKADKKMLNYSSNVKFFDSETAPLIPTGEGIIAGSFRLTVTGGTWNPNVDFAFNFEPTAAVIGYVDGSKYVSSLATHGSNIICLVSGLSQLGVAENSNSEFNVYPNPTNGKFNITLPSNIKANVSVVDVEGKVILEKNNLSNGALMNLGNVA
Ga0255241_1026739	Ga0255241_10267392	F033411	MPTVTRAQLVEQTREYMDAVGSTRWTDSFIQTVLAQVYDEEWSNILNAAPYYTFQQLTLTTDANGQIPFSSLNTGSGNAERNFYRVLSVSDGNVLYNETTFQYVPLATTTNYLPTYPRLYYMVGTNVQVLPVASGTSLYIAVNYKPTALNDLSSDSATIDFPDNNQGIITASAAAKLLL
Ga0255241_1026868	Ga0255241_10268682	F020535	MPAGTPFTGKSMTFNTGGTPAEVDHTGKWELTIGGASAKYATNSTGGWRKTTVGVGEWSGTVTVMLHAGGAQPLARGDEVAAQFHADSDDYISGTIVITEVGPITFDADSGDPVAIDYAFDGQGAPSKSGTAFDIIA
Ga0255241_1027000	Ga0255241_10270001	F000344	MRPKPPHAAESGVGKHTARESERAQACVTGKECVANTHPQIWPRD
Ga0255241_1027239	Ga0255241_10272391	F068610	WRFGEFAPAAKEFYKYGFMGYVGDFMVKVLQFPLRFVSTATPGNYRLVLPYRNVVATQGIRSEFNPDYNNAQYQISYINNPRALRVLPFRPEAVNPNMPFLVRDYGGRWKFATNDLGADCAGKPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVQGACPVIVTGCAADPGDSEQNYNSADPVCPRVIQFLASTTVGGTNFVLNANTSILCSDNYITSVAINAANVAALVVALQLAWDTEFGAGKGTWSVVSGNLIQISGTTCDSVTLEFSI
Ga0255241_1030616	Ga0255241_10306161	F018680	ELTEQLEGLSKVQRERTVKEVLEKKGVNAKAPRLILKDIDDVNEETVSNWLDDNADLFGIKVQQDEANMPEQDRAALRQQDVLTQGAFTPDRMEELNSRIDNADSMDALLDVLRSQQSS
Ga0255241_1032019	Ga0255241_10320191	F089854	LLGAFLACTIGLGSLLARSKTDTFAEIIGENAQSLLGVTRLVVVGVPGIPELSIDNPRTGPEGKLTEGTGFIRWNKWGALRVEDVEVKDGKLELKVVGMLPTRNFIQKKGSSGAGSADAVEVRFVMVIGAAGVEQSGFSVTVPEAQVPGGALTVKDLTVTYNPPEIAMGAVFQMGEGKGVGGSFALYDGNFNGLSLRATDLNWRLGASGSKIDKVDVGFFNVQNPPWYIEGGFTVIVGETRVAGRWPLEVEA
Ga0255241_1032608	Ga0255241_10326082	F039116	LDMGGNGHGFNYLVWSNFASSSVTYWCGYFNSFINIPYTERHRMNSMIAKTLDLSQRLVSLFIASALPIITGGAILGVDVVKSAGVAGLTALFGVVQKLAAASVDGELTSEEISAAFGTKTKKK
Ga0255241_1034084	Ga0255241_10340841	F062686	SLWAAVAVYFVHTAAGVVREFKAAPVAPVLPPPVEIPEDLVAVANQEREPWAQEEVLRSIRERYEDLRDWNRVRSAFGVGRIG
Ga0255241_1034084	Ga0255241_10340842	F027783	MTSPYIESLLDDVAVRAMEGFSNDPATPNDEVAPNPPEDTGATVEEDIAALQRALYGADYPGADPNTADDMQAWASWGRGLWESRREAVQMHLHLVERNRLFRAGQQWISANGLGPWREPARPRDAARVVYNMIDKALDQRLQILMDQKPGFSVTPTTQD
Ga0255241_1034780	Ga0255241_10347801	F001904	MKAVFLAVLALLALSAVAVSAQTDFEIAALEVAGDCHPECRWQCDDPVCPAQCHPVCERPKCQIHCEETECAKCKIHCDKPQCNVRCPKDLCEKNDCPKCETVCAPANCRTQCEAPNAVCTPMCEATKCDWKCKKPVTCPKPKCELVCERPKCAAKKRAAGPSFIETASGDKAENPTCCPCSVQANVAAAMQQASKNGDVEEEMMPSFMEVVHSM
Ga0255241_1034815	Ga0255241_10348151	F012966	NKINMKKLVLVLAALFAAVSVTAEDTSSLTFDAGYNNQYIINGVSRAEGTAYAGFAAVKSLKYADVYVSGVLLPKDGIDQSHWTVGTGKGVKTFEWLTLRLDATATRHQAGGFGIKNSTEFGVKLEAQNPWLTPYVRGAYDINLEQAGAGVGAYHTFGLPFGFKATPSAEFVKFERYDAVTAKLNVSRPIGNFVPYAEVGVIDNNFSTAKYRFATEELTAEVLYSAGVKYTF
Ga0255241_1037367	Ga0255241_10373671	F023334	MPSPTVITDAELTGLLKNVYSQYREKVQNLVTPLLAQLQKAKAGGPRNMRWGGNNVFFDVVVGRPSGSTFSQSGYFPPDTTASEVQGNVGVVRAYTTRQIDGLAFVGTQSKDAAFTTIATKTMEEIKEASTLLMQQALHNKADGVVALIGTASTTTSIIVSSPYGVSGAGQGGLLLSVGDYIAVLDTSSSDAVLGRAQITAISNSGDNA
Ga0255241_1038154	Ga0255241_10381541	F014838	KHMKESLKKIEELKNQLNTVKSELTNEFKAELKKIFVDNPTLDSVEMYLNNHEFNDGGATSFYIGYEDLKIVVEGEEVEREWDNATKQYKPNPVLESLIELFGDVQCIHEDLYGDEYEHLSITREDVLNY
Ga0255241_1042161	Ga0255241_10421611	F004916	YYYYHTFVRFWRSPLSFTFISLVFTVNSLILSFCLIKMKLTWILFALMALSSLALVLATDASADCHPTCRWQCDDPICPAQCHPVCERPKCQVHCEETPCAQCKVHCDKPQCNVRCPKDLCEKNDCPKCETVCAPAQCRTSCVAPNAVCTPMCEETKCDWKCKKPTLCPRPKCELVCETPKCAAKPPAVAAAANATALCPCNQANLKASLIQAGE
Ga0255241_1042929	Ga0255241_10429291	F070194	SCQAFPVYDMAWRIVDRQGREYNRGSYFMPDIIERITPIFRKHEEYPEYVAKGHVEQRFYQDVKDTFNRQVKTLREKGHRILLVAYNADFDRKALKRTAELMGGSRRSRFFRFEPEWVDLWQYWAESAPLHYTSERLTENGNWKSSLEEVFRFENHNPEGYAEKHTAWSDTDDAISVLEKVIRRKKRLPVYKGDAWMPGGWRALQKRCPGPGK
Ga0255241_1043164	Ga0255241_10431641	F031366	LKCTVLYRMRFIAPLAILSVPAAASARGGITPENGHKVVADTLIQRCEELLEEMKKEAPSGEGKTASTELQVKLAKLFTDRVKFLGGFWDLAKEVRDELRQTIKPSFAAVWRQFHKMGGSRKFPMMWPQYELYEIVDDINEFAQMLPGDQADNMWMLRYLGRNYPARVEETQGIEGLDRAEFDAAEQTLRQLQAQYPQPEN
Ga0255241_1044973	Ga0255241_10449731	F032191	TGTSASCAGEKQINRFPRRVRIHGGEFGESARAIHRNELRN
Ga0255241_1045998	Ga0255241_10459982	F069842	VQQFVTGGQWLLLVAADEENKIHGAATVSFINYPLHRVAFITCIGGKLISSKETFEQLKVILKSRGATKIQGSGRDAIVRLWRRYNFEPRNTLVEALL
Ga0255241_1047205	Ga0255241_10472051	F016268	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGNPGDNGGACDVTYNDVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNMFAKYAIKAV
Ga0255241_1047409	Ga0255241_10474091	F048851	MATYTVTNKYLVDNYAVLQLLTPNEIAVGQSITVAGVDATFN
Ga0255241_1047770	Ga0255241_10477702	F025806	EEVTNRTKRRQSDARAVTKVKQISLVKYLSAGRQHRSGWQAPVGTPQMARWPETAAGSECTARSKKEASRDLGDPLRSWSVVRADRVCRTIWLTPEKGRRCSVKSDLLIVLRARESRVHGEAAEQTKTGLRETSPVPTEAGV
Ga0255241_1047918	Ga0255241_10479181	F088802	QKPGFAVTPTTQDPEDKRKAQAQQLALEYQHEQQNMIRVAREAGFWAQTDGISFWHMHWDPDRGPWDERLGERPGQRKPLGDIGCQTLRVEQVRVSPNATATQAPHWVVIREVIAKQEAAFRYGLTGLDASASSLQTGNTPTYSGSEGMGAWVLTQTTIGEGQRLRDEEVTERFTVYLAPHPDVLPEGLQMVVVGDEVVF
Ga0255241_1048164	Ga0255241_10481641	F080126	GTEHPVSNTETEGGTEACTPVIPFQNGTGNSTTYKYGAKGKCSVATSAKLVADCSLVTGGDGALPGLQSGPCHITYVSSKCSGVTTSDVIIPIDAGDVGWSLATLTRATFNDATNGDMTVIDFPVTFNYSTPSKGKMAVKSNSAEQLEPLVGLNNADLPACTSLEIVDVTIKDPAGLPFAKLGGATKP
Ga0255241_1049484	Ga0255241_10494842	F003666	VRIHGGEFGESARAIHRNESEKSGLSRIKEIPWFD
Ga0255241_1049905	Ga0255241_10499052	F025267	LSIELTIKPLELGGGYMYRMLDMLCVEALVIGIVRMLLKRQQLSSTGYGVSASLNATFFALVLARFEPLLIYC
Ga0255241_1051426	Ga0255241_10514261	F030417	MNATKAESPQMADPFIPTEQPTQAGTRPSIHFSMYAYGGMSSACIMSWVDLTAKFSWSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWIQLDHDIEFDASDIIHMAELAHEHQATVCIPYPCRTVPPRPALRPKAEHLQALKHQVNDAECAAELVPITMFASGCLAIPRKCLMATLDALAGSG
Ga0255241_1051798	Ga0255241_10517983	F045698	VIDLTKSIRETHYQLQLDYQALMLKTTTLQAENEDLKERLAKIAEKIQLDI
Ga0255241_1052410	Ga0255241_10524101	F068783	TGVPGLASDTNKLTGIETSVIDNTTDGFTDIYASGKITTGTSPTDKREIQVWAIGWDGANWPDVFDGTVSGETITSADIKALICKPVANMSTNNTADRTYHFSNISLRGAFGGALPSKIVLFVTHDTVAALNATAANHELSYYGEYPQIQ
Ga0255241_1052593	Ga0255241_10525931	F031366	AAASARGGITPENGHKVVADTLIQRCEKLLEEMKEEGPSGEGKTASTELQVKLAKLFTDRVKFLGGFWNLAKEVRDELRPTIEPSFEAVWSQFAEMGGSRKFPMMWPQFLLYSIVDDINEFAQMSPNQQATNMGMLFDLGMDYPARVKEARGIAGLDRAEFDAAGQTLRQLQAQYPQSQN
Ga0255241_1052600	Ga0255241_10526001	F034900	DGVGMWQAGKIATIIELQDGGVAYVVTLRNGRQVWAPADAVNPDPQRPRGADPTPEQIRQRCLEIQREWPDEVRQQRDMRAQPVSWSVPRSHYLRDTQSGRTDFEH
Ga0255241_1054944	Ga0255241_10549442	F046255	FAAAPSQRLHLEISMEDKKIELSLSLVNATLQYLGTRPYGEVFQLVQAIQEQAIPQVPMPETKPEEAPVQ
Ga0255241_1055334	Ga0255241_10553341	F005505	TYEDKSGSYISXFYDAFLKEIQDAXYXTMFVFMYFXLHHFNPSTVNYFFFERXNIAELDEIRFYGVAPHXYFRPLMGLLVISPTHYEGLMXMGLFFILLTFLPVIYNXYNVYNKHVPTIPMQNSLIQTFAFIIFMLSLFCSASMLPCGRYYYEPEGGYVGNPXVKFSYQYIYLYMAXFVHHLDL
Ga0255241_1055984	Ga0255241_10559841	F010913	KFGCDECHNKELLMAVLESNKQQIERLNNIMSALTNLQDALNRLTTATDTAVTVLNTPHPTEEALQAAADLVNSQAARLEAASDNDPTTVA
Ga0255241_1057476	Ga0255241_10574761	F080126	GIKTSMVRNYAPCPGTEHPVSNTETEGGTEACTPVIPAEIGGDGSLYSYGDKGKCDVQVSAKLVKDCALAVDSAGANLGLQAGPCHITYISSKCSGILGTDNVTPIGASDSGFTLATLTRATFNDATNGDMTVIDFPVTFNYSIPSSGKMSIKSSSAEALKPLVGVNNADLPACTSLEMV
Ga0255241_1058141	Ga0255241_10581412	F048833	YAPHPGSPLDLENTFVNQISAAPVPAVGAEQVVGVPWVTQTKMRSNVYFVDPNILIEAEQQFNVKISFPSGNVPILATNVVDDTTNPVKIGVILDGLLLRPVQ
Ga0255241_1058643	Ga0255241_10586432	F010913	HNKELLMAVLESNKQQIERLNNIMSALTNLQDALNRLTTATDTAVTVLNTPHPSEEAIQAAADLVNAQATRLEAASDSDPATVA
Ga0255241_1058899	Ga0255241_10588991	F053238	ANMATGNVISCKQFASFLVWQEPVYDKEVLKDVRPFDGLIGYYNTGSFDAYSGTTHRFDRFNSVFPNVTGAWENSTGDSCVGQPCDPSENKIGWGYTRSTYSLEKQAWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYTPSGISGGAFACKAGLPAIS
Ga0255241_1059824	Ga0255241_10598241	F021287	QATFNSAIGNSFFNFGPTVPALNNQIYPWLDEDGNWWVFNQGRWTSKNRVAPNGFDRRIFVGTPTDLLSYDGGDGTATVTDVTGPMWMIDTAFEARFPVGVGSFAASGAVSVQGTTTTTSVVGEDKHTLTVPETAFNEHTHGVAQLIAPANDDYYLVNKSWSGLGSYPTQILQGAA
Ga0255241_1064141	Ga0255241_10641412	F001758	GPCEGGMKVPLEEAEFTSSSVGVRAPSVHAKKELGGEERLETVPNRVK
Ga0255241_1065693	Ga0255241_10656931	F085736	GSYVSXFYDAFLKEIQDAXYXTLYVFCYFFVHHFSPSTVNYFFFERXNISELDEIRFYGVAPHXYFRPLMGLLVVSPSHYEGLFXMALXFILLAALPIIYNLYNTNNSYLPIIPMQSSMSQTIAFILCMLSMYCTASMLPCGRYYYAPEGGYVGNPXVKFSYQYAYLY
Ga0255241_1066124	Ga0255241_10661242	F018164	MAKIFRGPSMKIKLGRQYDLWFVAYNWGKTVVKNNGTWSTIVSPQDSSLADYDKVLRGGYDNPITDSEAAELTAAGYG
Ga0255241_1066178	Ga0255241_10661782	F042867	MYGAVSDVAPRQVVTPLAVVQTGVACAAVGIETTVIESSDETATSVKERLNLKVLMSYLVILSLALLDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025746: Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8d (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences