Metagenome / Metatranscriptome Family F085156

Basic Information
Family ID	F085156
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	48 residues
Representative Sequence	MMGLAGEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Number of Associated Samples	101
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	53.15 %
% of genes near scaffold ends (potentially truncated)	71.17 %
% of genes from short scaffolds (< 2000 bps)	90.09 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (53.153 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater (27.928 % of family members)
Environment Ontology (ENVO)	Unclassified (45.045 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (75.676 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF00268	Ribonuc_red_sm	51.35
PF02867	Ribonuc_red_lgC	27.93
PF01510	Amidase_2	1.80
PF03477	ATP-cone	0.90
PF02881	SRP54_N	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0208	Ribonucleotide reductase beta subunit, ferritin-like domain	Nucleotide transport and metabolism [F]	51.35
COG0209	Ribonucleotide reductase alpha subunit	Nucleotide transport and metabolism [F]	27.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
All Organisms	root	All Organisms	46.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
cellular organisms	root	All Organisms → cellular organisms	46.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.04 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	10.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	14.41 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	10.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	14.41 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	10.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	14.41 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	10.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	13.51 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	10.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	10.81 %
Limnohabitans	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	10.81 %
unclassified Limnohabitans	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
asterids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
campanulids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Asterales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Asteraceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Asteroideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Anthemideae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Anthemidinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Tanacetum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.15 %
Tanacetum cinerariifolium	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	10.81 %
Limnohabitans sp. Rim28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000736\|JGI12547J11936_1003349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4463	Open in IMG/M
3300000928\|OpTDRAFT_10141240	All Organisms → cellular organisms → Bacteria	1794	Open in IMG/M
3300001275\|B570J13894_1023888	Not Available	575	Open in IMG/M
3300002351\|B570J29582_1023929	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300003277\|JGI25908J49247_10034171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1416	Open in IMG/M
3300003395\|JGI25917J50250_1001666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	6314	Open in IMG/M
3300003412\|JGI25912J50252_10110496	Not Available	656	Open in IMG/M
3300003431\|JGI25913J50563_1000656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	6941	Open in IMG/M
3300003493\|JGI25923J51411_1041258	Not Available	855	Open in IMG/M
3300004762\|Ga0007749_1200983	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300004763\|Ga0007746_1062195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2715	Open in IMG/M
3300004796\|Ga0007763_10060283	Not Available	697	Open in IMG/M
3300004796\|Ga0007763_10088808	Not Available	817	Open in IMG/M
3300005517\|Ga0070374_10382769	Not Available	708	Open in IMG/M
3300005517\|Ga0070374_10516953	Not Available	595	Open in IMG/M
3300007545\|Ga0102873_1192458	Not Available	613	Open in IMG/M
3300007559\|Ga0102828_1050294	Not Available	968	Open in IMG/M
3300007622\|Ga0102863_1113177	Not Available	797	Open in IMG/M
3300007636\|Ga0102856_1013490	Not Available	1156	Open in IMG/M
3300007718\|Ga0102852_1077418	Not Available	645	Open in IMG/M
3300007962\|Ga0102907_1039948	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1290	Open in IMG/M
3300008052\|Ga0102893_1213264	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300008055\|Ga0108970_10786396	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1163	Open in IMG/M
3300008119\|Ga0114354_1266648	Not Available	538	Open in IMG/M
3300008261\|Ga0114336_1201429	Not Available	835	Open in IMG/M
3300008996\|Ga0102831_1259565	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300009184\|Ga0114976_10368583	Not Available	756	Open in IMG/M
3300009185\|Ga0114971_10334130	Not Available	870	Open in IMG/M
3300009187\|Ga0114972_10070838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	2342	Open in IMG/M
3300010966\|Ga0137675_1020408	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300012352\|Ga0157138_1056308	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300012727\|Ga0157531_1164695	Not Available	1126	Open in IMG/M
3300012768\|Ga0138276_1036201	Not Available	535	Open in IMG/M
3300012770\|Ga0138291_1130357	Not Available	782	Open in IMG/M
3300012772\|Ga0138287_1230153	Not Available	568	Open in IMG/M
3300012773\|Ga0138290_1067609	Not Available	903	Open in IMG/M
3300013006\|Ga0164294_11159392	Not Available	518	Open in IMG/M
3300013063\|Ga0157558_123308	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1602	Open in IMG/M
3300013076\|Ga0157551_1144993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1647	Open in IMG/M
3300013079\|Ga0157536_1034375	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300013372\|Ga0177922_10208724	Not Available	783	Open in IMG/M
3300013372\|Ga0177922_11196970	Not Available	683	Open in IMG/M
3300018790\|Ga0187842_1155549	Not Available	677	Open in IMG/M
3300018790\|Ga0187842_1220597	Not Available	552	Open in IMG/M
3300018868\|Ga0187844_10306261	Not Available	662	Open in IMG/M
3300019093\|Ga0187843_10247927	Not Available	741	Open in IMG/M
3300020141\|Ga0211732_1541786	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300020501\|Ga0208590_1004813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1881	Open in IMG/M
3300020523\|Ga0208226_1034095	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300020532\|Ga0208601_1046506	Not Available	609	Open in IMG/M
3300020542\|Ga0208857_1050849	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300020565\|Ga0208718_1019089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1395	Open in IMG/M
3300021108\|Ga0214162_1014340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1443	Open in IMG/M
3300021108\|Ga0214162_1060952	Not Available	621	Open in IMG/M
3300021312\|Ga0210306_1219549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1592	Open in IMG/M
3300021317\|Ga0210309_1084367	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300021325\|Ga0210301_1317074	Not Available	982	Open in IMG/M
3300021336\|Ga0210307_1268659	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1274	Open in IMG/M
3300021845\|Ga0210297_1030082	All Organisms → cellular organisms → Bacteria	1083	Open in IMG/M
3300022748\|Ga0228702_1092096	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300024343\|Ga0244777_10170232	Not Available	1404	Open in IMG/M
3300024343\|Ga0244777_10526495	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300024343\|Ga0244777_10829108	Not Available	544	Open in IMG/M
3300024348\|Ga0244776_10031435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4269	Open in IMG/M
3300024358\|Ga0255173_1080972	Not Available	540	Open in IMG/M
3300024485\|Ga0256318_1073471	Not Available	733	Open in IMG/M
3300024487\|Ga0255222_1016269	Not Available	1064	Open in IMG/M
3300024537\|Ga0255225_1054831	Not Available	675	Open in IMG/M
3300024558\|Ga0255232_1026313	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1177	Open in IMG/M
3300024560\|Ga0256306_1067147	Not Available	857	Open in IMG/M
3300024560\|Ga0256306_1098998	Not Available	683	Open in IMG/M
3300024571\|Ga0256302_1103312	Not Available	670	Open in IMG/M
3300024572\|Ga0255268_1075474	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	847	Open in IMG/M
3300024849\|Ga0255230_1019571	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1189	Open in IMG/M
3300024856\|Ga0256304_1107479	Not Available	559	Open in IMG/M
3300025742\|Ga0255248_1024518	Not Available	698	Open in IMG/M
3300025744\|Ga0255245_1009085	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1220	Open in IMG/M
3300025746\|Ga0255241_1018528	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300025757\|Ga0256313_1041009	Not Available	685	Open in IMG/M
3300027121\|Ga0255074_1037161	Not Available	605	Open in IMG/M
3300027129\|Ga0255067_1005887	All Organisms → cellular organisms → Bacteria	1981	Open in IMG/M
3300027139\|Ga0255082_1005742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	2301	Open in IMG/M
3300027143\|Ga0255105_1001683	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	5561	Open in IMG/M
3300027145\|Ga0255114_1019882	Not Available	1316	Open in IMG/M
3300027154\|Ga0255111_1007834	Not Available	2543	Open in IMG/M
3300027155\|Ga0255081_1030789	Not Available	1182	Open in IMG/M
3300027206\|Ga0208023_1058280	Not Available	630	Open in IMG/M
3300027210\|Ga0208802_1018859	Not Available	948	Open in IMG/M
3300027239\|Ga0208807_1052990	Not Available	554	Open in IMG/M
3300027418\|Ga0208022_1113817	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300027538\|Ga0255085_1071050	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300027578\|Ga0255075_1052775	Not Available	731	Open in IMG/M
3300027589\|Ga0255123_1017736	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1523	Open in IMG/M
3300027600\|Ga0255117_1002790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	4928	Open in IMG/M
3300027659\|Ga0208975_1194893	Not Available	544	Open in IMG/M
(restricted) 3300027730\|Ga0247833_1235356	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300027746\|Ga0209597_1362655	Not Available	538	Open in IMG/M
3300027754\|Ga0209596_1059012	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1962	Open in IMG/M
3300027756\|Ga0209444_10205484	Not Available	712	Open in IMG/M
3300027772\|Ga0209768_10293796	Not Available	686	Open in IMG/M
3300027963\|Ga0209400_1037691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Limnohabitans → unclassified Limnohabitans → Limnohabitans sp. Rim28	2618	Open in IMG/M
(restricted) 3300027977\|Ga0247834_1094541	Not Available	1358	Open in IMG/M
3300028097\|Ga0255261_1011286	All Organisms → cellular organisms → Bacteria	1500	Open in IMG/M
3300028255\|Ga0255226_1010068	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1159	Open in IMG/M
3300028255\|Ga0255226_1032316	Not Available	674	Open in IMG/M
3300029697\|Ga0256301_1018573	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	1154	Open in IMG/M
3300029697\|Ga0256301_1035028	Not Available	852	Open in IMG/M
3300031786\|Ga0315908_10784899	All Organisms → cellular organisms → Bacteria	779	Open in IMG/M
3300034104\|Ga0335031_0509914	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300034106\|Ga0335036_0646322	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300034121\|Ga0335058_0634733	Not Available	594	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.10%
Host-Associated	Host-Associated	0.90%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.10%
Plants	Host-Associated → Plants	0.90%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	79.28%
Marine	Environmental → Aquatic → Marine	19.82%
Leaf	Host-Associated → Plants → Leaf	0.90%

Habitat	Taxonomy	Distribution
River	Environmental → Aquatic → Freshwater → River	27.93%
Lake	Environmental → Aquatic → Freshwater → Lake	26.13%
Lentic	Environmental → Aquatic → Freshwater → Lentic	21.62%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	18.92%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.90%
Pond	Environmental → Aquatic → Freshwater → Pond	0.90%
Creek	Environmental → Aquatic → Freshwater → Creek	0.90%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.90%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	27.93%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	26.13%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	18.92%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	12.61%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	9.01%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Freshwater → Creek → Unclassified	0.90%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.90%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	27.93%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	18.92%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	11.71%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	9.01%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	9.01%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	8.11%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	6.31%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	1.80%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater And Sediment	0.90%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.90%
Pond Fresh Water	Environmental → Aquatic → Freshwater → Pond → Unclassified → Pond Fresh Water	0.90%
Freshwater	Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater	0.90%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.90%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000736	Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB epilimnion July 2011	Environmental	Open in IMG/M
3300000928	Marine plume microbial communities from the Columbia River - 25 PSU	Environmental	Open in IMG/M
3300001275	Freshwater microbial communities from Lake Mendota, WI - Practice 29OCT2010 epilimnion	Environmental	Open in IMG/M
3300002351	Freshwater microbial communities from Lake Mendota, WI - 05MAY2012 deep hole epilimnion	Environmental	Open in IMG/M
3300003277	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD	Environmental	Open in IMG/M
3300003395	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.SN	Environmental	Open in IMG/M
3300003412	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD	Environmental	Open in IMG/M
3300003431	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MLB.SN	Environmental	Open in IMG/M
3300003493	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SN	Environmental	Open in IMG/M
3300004762	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004763	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004796	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MLB.SN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005517	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SN (version 4)	Environmental	Open in IMG/M
3300007545	Estuarine microbial communities from the Columbia River estuary - metaG 1547B-3	Environmental	Open in IMG/M
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental	Open in IMG/M
3300007622	Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02	Environmental	Open in IMG/M
3300007636	Estuarine microbial communities from the Columbia River estuary - metaG 1371A-3	Environmental	Open in IMG/M
3300007718	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-3	Environmental	Open in IMG/M
3300007962	Estuarine microbial communities from the Columbia River estuary - metaG 1556B-02	Environmental	Open in IMG/M
3300008052	Estuarine microbial communities from the Columbia River estuary - metaG 1553A-02	Environmental	Open in IMG/M
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated	Open in IMG/M
3300008119	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0110-C-NA	Environmental	Open in IMG/M
3300008261	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-C-NA	Environmental	Open in IMG/M
3300008996	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300009185	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG	Environmental	Open in IMG/M
3300009187	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_EF_MetaG	Environmental	Open in IMG/M
3300010966	Freshwater microbial communities from the surface of the forest pond in Jussy, Geneva, Switzerland - JEBV1bis, april 2016	Environmental	Open in IMG/M
3300012352	Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37	Environmental	Open in IMG/M
3300012727	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES016 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012768	Freshwater microbial communities from Lake Montjoie, Canada - M_130710_M_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012770	Freshwater microbial communities from Lake Simoncouche, Canada - S_140625_E_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012772	Freshwater microbial communities from Lake Simoncouche, Canada - S_130826_E_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012773	Freshwater microbial communities from Lake Simoncouche, Canada - S_140212_E_mt (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013006	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES005 metaG	Environmental	Open in IMG/M
3300013063	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES051 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013076	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES042 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013079	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES022 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013372	Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPs	Environmental	Open in IMG/M
3300018790	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41	Environmental	Open in IMG/M
3300018868	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_50	Environmental	Open in IMG/M
3300019093	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_43	Environmental	Open in IMG/M
3300020141	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1	Environmental	Open in IMG/M
3300020501	Freshwater microbial communities from Lake Mendota, WI - 27SEP2009 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020523	Freshwater microbial communities from Lake Mendota, WI - 18MAY2011 deep hole epilimnion ns (SPAdes)	Environmental	Open in IMG/M
3300020532	Freshwater microbial communities from Lake Mendota, WI - 09NOV2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020542	Freshwater microbial communities from Lake Mendota, WI - 05NOV2012 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300020565	Freshwater microbial communities from Lake Mendota, WI - 29APR2009 deep hole epilimnion ns (SPAdes)	Environmental	Open in IMG/M
3300021108	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300021312	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1072 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021317	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Washington, United States ? R1088 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021325	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1033 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021336	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1073 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021845	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R876 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022748	Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17_Aug_MG	Environmental	Open in IMG/M
3300024343	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction	Environmental	Open in IMG/M
3300024348	0.2um to 3um size fraction coassembly	Environmental	Open in IMG/M
3300024358	Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepA_8d	Environmental	Open in IMG/M
3300024485	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepC_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024487	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_0h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024537	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024558	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepC_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024560	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024571	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024572	Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024849	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024856	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025742	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepC_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025744	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_0h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025746	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025757	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Miss_RepA_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027121	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepC_8h	Environmental	Open in IMG/M
3300027129	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8h	Environmental	Open in IMG/M
3300027139	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepB_8h	Environmental	Open in IMG/M
3300027143	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8h	Environmental	Open in IMG/M
3300027145	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8h	Environmental	Open in IMG/M
3300027154	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Yuk_RepA_8h	Environmental	Open in IMG/M
3300027155	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Colum_RepA_8h	Environmental	Open in IMG/M
3300027206	Estuarine microbial communities from the Columbia River estuary - metaG 1370A-02 (SPAdes)	Environmental	Open in IMG/M
3300027210	Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3 (SPAdes)	Environmental	Open in IMG/M
3300027239	Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3 (SPAdes)	Environmental	Open in IMG/M
3300027418	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.747 (SPAdes)	Environmental	Open in IMG/M
3300027538	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8d	Environmental	Open in IMG/M
3300027578	Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepA_8h	Environmental	Open in IMG/M
3300027589	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepA_8d	Environmental	Open in IMG/M
3300027600	Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8h	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027730 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m	Environmental	Open in IMG/M
3300027746	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027754	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027756	Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (SPAdes)	Environmental	Open in IMG/M
3300027772	Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)	Environmental	Open in IMG/M
3300027963	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027977 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_12m	Environmental	Open in IMG/M
3300028097	Metatranscriptome of freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8d (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300028255	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepB_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029697	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8h (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031786	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124	Environmental	Open in IMG/M
3300034104	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120	Environmental	Open in IMG/M
3300034106	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131	Environmental	Open in IMG/M
3300034121	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174	Environmental	Open in IMG/M

Geographical Distribution

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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F085156

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12547J11936_10033492	3300000736	Freshwater And Sediment	MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
OpTDRAFT_101412402	3300000928	Freshwater And Marine	MMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
B570J13894_10238881	3300001275	Freshwater	GAGVAAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV*
B570J29582_10239292	3300002351	Freshwater	GEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV*
JGI25908J49247_100341713	3300003277	Freshwater Lake	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
JGI25917J50250_10016666	3300003395	Freshwater Lake	MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV*
JGI25912J50252_101104962	3300003412	Freshwater Lake	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDN
JGI25913J50563_10006567	3300003431	Freshwater Lake	MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV*
JGI25923J51411_10412581	3300003493	Freshwater Lake	MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISN
Ga0007749_12009831	3300004762	Freshwater Lake	EAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0007746_10621952	3300004763	Freshwater Lake	MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV*
Ga0007763_100602832	3300004796	Freshwater Lake	MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDN
Ga0007763_100888082	3300004796	Freshwater Lake	MIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0070374_103827691	3300005517	Freshwater Lake	MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEIS
Ga0070374_105169532	3300005517	Freshwater Lake	MIGLAGEEALKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEIS
Ga0102873_11924583	3300007545	Estuarine	VGADGAGVAAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0102828_10502941	3300007559	Estuarine	RGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNV*
Ga0102863_11131771	3300007622	Estuarine	MMGLAGEEELKEDRSARRSAGRPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0102856_10134902	3300007636	Estuarine	MMGLVGEDELKEDRSARRSAGWPLGGKFGIAGCNAGADESFQDNIEISNV*
Ga0102852_10774182	3300007718	Estuarine	MMGLAGEDELKEDRSARRSADGPLGGKLGIAGCDAGVDESFQDNIEISNV*
Ga0102907_10399483	3300007962	Estuarine	MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDE
Ga0102893_12132642	3300008052	Estuarine	FAVKEDRSARRSTDGPLGGKLGIAGCNAGADESFQDNIEISNE*
Ga0108970_107863962	3300008055	Estuary	MMGLAGEAELKEDRSARRSAGGPLGGKLGITGCNAGVDESFQDNIEISNV*
Ga0114354_12666481	3300008119	Freshwater, Plankton	MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDVSFQDNIEISNE*
Ga0114336_12014292	3300008261	Freshwater, Plankton	MMGLAGEAELKEDRSARRSADGPLGGKLGIAGCSAGVDESFQDNIEISNV*
Ga0102831_12595652	3300008996	Estuarine	LKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0114976_103685833	3300009184	Freshwater Lake	MKGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0114971_103341302	3300009185	Freshwater Lake	MDALMMGLARGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNE*
Ga0114972_100708382	3300009187	Freshwater Lake	MMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEITNV*
Ga0137675_10204081	3300010966	Pond Fresh Water	AEAPAENEDRSAKRSADGPLGGKLGIAGCNAGLEESSQDNIEISNE*
Ga0157138_10563082	3300012352	Freshwater	PAENEDRSAKRSADGPLGGKLGIAGCNAGLEESSQDNIEISNE*
Ga0157531_11646951	3300012727	Freshwater	AVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0138276_10362012	3300012768	Freshwater Lake	MMGLAGEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI
Ga0138291_11303572	3300012770	Freshwater Lake	MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNADVDESFQDNIEISNV*
Ga0138287_12301531	3300012772	Freshwater Lake	MMGLEVLMLAAALKEDRSAKRSADGPLGGKLGIAG
Ga0138290_10676092	3300012773	Freshwater Lake	MGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0164294_111593921	3300013006	Freshwater	MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI
Ga0157558_1233081	3300013063	Freshwater	VGVLNEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0157551_11449932	3300013076	Freshwater	MMGLAGEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0157536_10343751	3300013079	Freshwater	GAGVAALMMGLTVEAELKEDRSARRSAGGPLGGKLGITGCNAGVDESFQDNIEISNV*
Ga0177922_102087242	3300013372	Freshwater	MIGLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV*
Ga0177922_111969702	3300013372	Freshwater	MIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIE
Ga0187842_11555491	3300018790	Freshwater	MMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0187842_12205972	3300018790	Freshwater	MMGLAVEAELKEDRSARRSADGPLGGQLGIAGCNAGVDESFQDNIEIS
Ga0187844_103062612	3300018868	Freshwater	MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDVSFQDNIEISNE
Ga0187843_102479272	3300019093	Freshwater	MIGLAGEEELKEYRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0211732_15417861	3300020141	Freshwater	AAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208590_10048132	3300020501	Freshwater	MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208226_10340952	3300020523	Freshwater	ELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208601_10465061	3300020532	Freshwater	VGADGAGVAAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISN
Ga0208857_10508492	3300020542	Freshwater	GLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208718_10190892	3300020565	Freshwater	MMGLEGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0214162_10143402	3300021108	Freshwater	MMGLAVEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0214162_10609522	3300021108	Freshwater	MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDE
Ga0210306_12195492	3300021312	Estuarine	MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV
Ga0210309_10843671	3300021317	Estuarine	ELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0210301_13170741	3300021325	Estuarine	MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDES
Ga0210307_12686592	3300021336	Estuarine	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESF
Ga0210297_10300822	3300021845	Estuarine	LTVEAPALNEDRSTKRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0228702_10920961	3300022748	Freshwater	AVACMGLACATEAEEALNEDRSAKRSADRPLGGKLGIAGCNAGLDESSQDNIEISNV
Ga0244777_101702321	3300024343	Estuarine	PALNEDRSTKRSADGPLGGKLGIAGCNAGLDESSQDNIEISNE
Ga0244777_105264951	3300024343	Estuarine	GLARGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNV
Ga0244777_108291082	3300024343	Estuarine	MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQYNIEISN
Ga0244776_100314351	3300024348	Estuarine	AGVAAGMMGLVGEDELKEDRSARRSAGWPLGGKFGIAGCNAGADESFQDNIEISNV
Ga0255173_10809722	3300024358	Freshwater	ATEAEEALNEDRSAKRSADRPLGGKLGIAGCNAGLDESSQDNIEISNV
Ga0256318_10734711	3300024485	Freshwater	MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNVLIMKA
Ga0255222_10162693	3300024487	Freshwater	DGAGVAALMMGLTVEAELKEDRSARRSADGPLGEKLGIAGCNAGVDESFQDNIEISNV
Ga0255225_10548312	3300024537	Freshwater	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQD
Ga0255232_10263132	3300024558	Freshwater	MMGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDN
Ga0256306_10671471	3300024560	Freshwater	VEAELKEDRSARRSADGPLGEKLGIAGCNAGVDESFQDNIEISNV
Ga0256306_10989982	3300024560	Freshwater	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQ
Ga0256302_11033121	3300024571	Freshwater	MIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQ
Ga0255268_10754741	3300024572	Freshwater	AEEALNEDRSAKRSADRPLGGKLGIAGCNAGLDESSQDNIEISNV
Ga0255230_10195711	3300024849	Freshwater	MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEIS
Ga0256304_11074791	3300024856	Freshwater	GVAALMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255248_10245182	3300025742	Freshwater	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEIS
Ga0255245_10090852	3300025744	Freshwater	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIE
Ga0255241_10185282	3300025746	Freshwater	DGAGVAAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0256313_10410092	3300025757	Freshwater	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDE
Ga0255074_10371613	3300027121	Freshwater	GAGVAALMMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255067_10058872	3300027129	Freshwater	LAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255082_10057422	3300027139	Freshwater	MMGLTVEAELKEDRSARRSADGPLGEKLGIAGCNAGVDESFQDNIEISNV
Ga0255105_10016831	3300027143	Freshwater	VAAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255114_10198822	3300027145	Freshwater	GEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255111_10078341	3300027154	Freshwater	AGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV
Ga0255081_10307892	3300027155	Freshwater	GADGAGVAAVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208023_10582802	3300027206	Estuarine	MMGLVGEDELKEDRSARRSAGWPLGGKFGIAGCNAGADESFQDNIEISDM
Ga0208802_10188592	3300027210	Estuarine	MMGLAVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIE
Ga0208807_10529902	3300027239	Estuarine	LMKGLTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208022_11138171	3300027418	Estuarine	KEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255085_10710501	3300027538	Freshwater	MMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255075_10527751	3300027578	Freshwater	MIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255123_10177364	3300027589	Freshwater	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNVLI
Ga0255117_10027905	3300027600	Freshwater	AAVMIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0208975_11948931	3300027659	Freshwater Lentic	MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIE
(restricted) Ga0247833_12353561	3300027730	Freshwater	AVMIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0209597_13626553	3300027746	Freshwater Lake	GMAALMMGLARGGELKEDRSARRSAGVPLGGKLGIAVCNAGVDESFQDNIEISNV
Ga0209596_10590122	3300027754	Freshwater Lake	LTVEAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0209444_102054841	3300027756	Freshwater Lake	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISN
Ga0209768_102937961	3300027772	Freshwater Lake	MIGLAGEEELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEI
Ga0209400_10376912	3300027963	Freshwater Lake	MMGLTVEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISNV
(restricted) Ga0247834_10945412	3300027977	Freshwater	LGGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV
Ga0255261_10112861	3300028097	Freshwater	GLAGEAELKEDRSARRSAGGPLGGKLGIAGCSAGVDESFQDNIEISNV
Ga0255226_10100681	3300028255	Freshwater	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVD
Ga0255226_10323161	3300028255	Freshwater	MMGLAGEAELKEDRSARRSAGGPLGGKLGITGCNAGVDE
Ga0256301_10185731	3300029697	Freshwater	MIGLAGEEELNEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI
Ga0256301_10350282	3300029697	Freshwater	MIGLAGEEELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNI
Ga0315908_107848991	3300031786	Freshwater	LKEDRSARRSAGGPLGGKLGIAGCNACVDVSFQDNIEISNE
Ga0335031_0509914_38_223	3300034104	Freshwater	VGADGAGVAALMMGLAGEAELKEDRSARRSAGGPLGGKLGIAGCNAGVDESFQDNIEISN
Ga0335036_0646322_1_150	3300034106	Freshwater	TVNEDRSAKRSADGPLGGKLGIAGCNAGLDDSSQDNIEISNEWIMKACD
Ga0335058_0634733_450_593	3300034121	Freshwater	LVDVFAVKEDRSARRSADGPLGGKLGIAGCNAGADESFQDNIEISNE

Hidden Markov Model


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