NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300013045

3300013045: Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300013045 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0090294 | Gp0175826 | Ga0154016
Sample NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size18296762
Sequencing Scaffolds41
Novel Protein Genes42
Associated Families41

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria6
Not Available22
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia jinanensis1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameCorn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biomerhizospheresoil
Earth Microbiome Project Ontology (EMPO)Host-associated → Plant → Plant rhizosphere

Location Information
LocationUSA: Michigan
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000344Metagenome / Metatranscriptome1257Y
F000364Metagenome / Metatranscriptome1229Y
F000817Metagenome / Metatranscriptome879Y
F001784Metagenome / Metatranscriptome635Y
F002712Metagenome / Metatranscriptome535Y
F003143Metagenome / Metatranscriptome505Y
F003383Metagenome / Metatranscriptome490Y
F003972Metagenome / Metatranscriptome459Y
F004214Metagenome / Metatranscriptome448Y
F004297Metagenome / Metatranscriptome445Y
F004332Metagenome / Metatranscriptome443Y
F005005Metagenome / Metatranscriptome415Y
F005880Metagenome / Metatranscriptome387Y
F005991Metagenome / Metatranscriptome384Y
F007821Metagenome / Metatranscriptome344Y
F008193Metagenome / Metatranscriptome337Y
F010923Metagenome / Metatranscriptome297Y
F011957Metagenome / Metatranscriptome285Y
F012204Metagenome / Metatranscriptome282Y
F013832Metagenome / Metatranscriptome268Y
F015442Metagenome / Metatranscriptome254Y
F016001Metagenome / Metatranscriptome250Y
F024195Metagenome / Metatranscriptome207Y
F027762Metagenome / Metatranscriptome193Y
F032547Metagenome / Metatranscriptome179N
F035429Metagenome / Metatranscriptome172Y
F040354Metagenome / Metatranscriptome162Y
F041793Metagenome / Metatranscriptome159Y
F043786Metagenome / Metatranscriptome155Y
F051345Metagenome / Metatranscriptome144N
F065302Metagenome / Metatranscriptome127Y
F065371Metagenome / Metatranscriptome127Y
F067753Metagenome / Metatranscriptome125Y
F070814Metagenome / Metatranscriptome122Y
F082273Metagenome / Metatranscriptome113Y
F087553Metagenome / Metatranscriptome110Y
F092574Metagenome / Metatranscriptome107N
F093444Metagenome / Metatranscriptome106Y
F095017Metagenome / Metatranscriptome105N
F100674Metagenome / Metatranscriptome102Y
F104505Metagenome / Metatranscriptome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0154016_100740All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria543Open in IMG/M
Ga0154016_101409Not Available734Open in IMG/M
Ga0154016_102532Not Available888Open in IMG/M
Ga0154016_103219Not Available555Open in IMG/M
Ga0154016_103245Not Available1775Open in IMG/M
Ga0154016_104886Not Available544Open in IMG/M
Ga0154016_106132Not Available598Open in IMG/M
Ga0154016_106247All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium522Open in IMG/M
Ga0154016_112476Not Available563Open in IMG/M
Ga0154016_112642All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium741Open in IMG/M
Ga0154016_114696Not Available564Open in IMG/M
Ga0154016_116872Not Available645Open in IMG/M
Ga0154016_117329All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium543Open in IMG/M
Ga0154016_118479All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium618Open in IMG/M
Ga0154016_120261All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia jinanensis592Open in IMG/M
Ga0154016_120271Not Available551Open in IMG/M
Ga0154016_121866Not Available1054Open in IMG/M
Ga0154016_121916Not Available750Open in IMG/M
Ga0154016_123097Not Available526Open in IMG/M
Ga0154016_124436Not Available618Open in IMG/M
Ga0154016_125737All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium645Open in IMG/M
Ga0154016_126058All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria632Open in IMG/M
Ga0154016_126357All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria646Open in IMG/M
Ga0154016_126477All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium596Open in IMG/M
Ga0154016_127327All Organisms → cellular organisms → Bacteria → Proteobacteria505Open in IMG/M
Ga0154016_127537All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria734Open in IMG/M
Ga0154016_128152All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium844Open in IMG/M
Ga0154016_128650All Organisms → Viruses → Predicted Viral2076Open in IMG/M
Ga0154016_128908Not Available537Open in IMG/M
Ga0154016_130920Not Available594Open in IMG/M
Ga0154016_133083Not Available533Open in IMG/M
Ga0154016_133563All Organisms → cellular organisms → Bacteria → Terrabacteria group530Open in IMG/M
Ga0154016_133928All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria821Open in IMG/M
Ga0154016_135712Not Available567Open in IMG/M
Ga0154016_137457Not Available929Open in IMG/M
Ga0154016_139329Not Available961Open in IMG/M
Ga0154016_140184Not Available552Open in IMG/M
Ga0154016_141449All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia984Open in IMG/M
Ga0154016_142165All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia795Open in IMG/M
Ga0154016_142845All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria639Open in IMG/M
Ga0154016_142984Not Available943Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0154016_100740Ga0154016_1007402F035429GRVEVPGAPGWSYSSIGGAGGDALSVEMAGPDHAQVTFTVPDFLSRGDELGEVARVVIRAWERTVRSAGLGA*
Ga0154016_101409Ga0154016_1014091F013832AGVHVRPHATTVCDNNPGTVSPRCTNISNLMLNQGNGPVFIQNATQKGVKAGSLYQNRIVNLRQASNTRTNEDFIIRQVSDIGHLCGTGGVNSLDPTSYACLNYPDFYPVFQGQFAPNSNETGFCVGAISATEGFKVRLERCGTPRTFWVGDIAASVQVTIVFNNAPFLLFYFPLEFSADTSASNPLVMTLNPNSKNPSNLLTLQQENFSGGLVPDRQMFTLTYPTGFIVHN*
Ga0154016_102532Ga0154016_1025322F104505PGMRAPLRRSETRTGCTAAVADDRAASHGVRCSPGFCVRSAAGVHWVPRTRFVLVVSDGTGGVHRSPSTARLRVRFHPLVSFAPLQSPPSRVRRRCLHRQRLPWGSRSLIATSPGVVRAPSLPTLGAFPSTAFLTPSTASAATRLVGLFHPTATSRVRSTGVFPRKQPRRLVVVASHALSPVVRRPADDVATAATNRRPALRALFRLRIRCRQLGV*
Ga0154016_103219Ga0154016_1032191F000344MRPRHPHAAESGVGKHTARESESAQACAAGKERVANAHPHKL
Ga0154016_103245Ga0154016_1032452F043786LVRLDAPVAPILDLSVAANPRAALAALRGIIVFRRFPAMGRTVRAADSNPG*
Ga0154016_104886Ga0154016_1048861F027762GSEPGTMIRERVVTKIIDAFGERRESGPGTKVSFSDCAAD*
Ga0154016_106132Ga0154016_1061321F070814QGAVHEQLEAGRNFFLILPDGEDALARFCHSFKLQSDCLHGRFTRSDLLRMGQYVDGAAFDEMLAAWDAEDLVVFLEQLDFPINRPPHVKPFIVYSSLWGILSQHDDLRSARVWLEDSEQWDRTRLSQPHVYQWNNGGWKML*
Ga0154016_106247Ga0154016_1062471F003143MEVVIGFAVGYWVGTRQGRQGLQNALESAQAIWAHPEARKMLAEGISAAQTVAGPVMERLGDKSSRSRRAALISSVVDELIERRQARRAA*
Ga0154016_106247Ga0154016_1062472F007821VLGMLSRLVKAAVIAGVLALIIDSLPDIKRYLGIRDMLGPGAQERM*
Ga0154016_112476Ga0154016_1124761F065302PGFTVRFSDPSACGRSLCGQVRRITRLHSPSPLFSMRRVTVQTRPSRSSTLPEPESRYGLSLAHNDAFATIARSTFLACTFVSASKTFASPFDSWLLRSVRFRGRTGALSLPGTRFPRRSPMLLTVPQSPLPFGSSCENPPDQSVQPVPVQEARLTRHSIASYSPPRPLSISLQINV*
Ga0154016_112642Ga0154016_1126421F011957VTDEITLTLPREPEFHRVAHLVLGGLAVRLNLTIENLEDLELALDAILGRTDPDAGDITVRMTPRDGELETVVGPLTTKVLDEIEGEGDDGALGLRRVLESTVDDIHVDGPWVRLTKQVT
Ga0154016_114696Ga0154016_1146961F003383MSRRVAPLPASSRPSRVAFPGCPFRAPFLLSRRPKPWVAPWLQSFGCAGDGCSSCPEPRMPLTLPVSAGIRVAPVAPASSCLASDAGLGLPLVLHLRLYRRWIIESPRCSHLSAVPSCQFSSCPANQPFGIADDSSFELPRTSNPPAPIDGYPSYPGSRTYRFALVESPS
Ga0154016_116872Ga0154016_1168721F095017IAAVLVAVLPASAQAIRHGRVRLTAVSPAIVHGSGFYASERVTVTVRGASGVMQKSVMSTAGGAFTVRFGRAVPAGGCQGLTVSAVGARGDRADWKTAPPLCGTPLAP*
Ga0154016_117329Ga0154016_1173291F008193AILAALCAVGSASAKGPHNIRYSFLGTLTSTPSNGGVSINVEGGNKVALRAMLGAPVTQTFAYGGDTEFLKWSKGVPTIVQAADLAAGDYVWVHVRAPRGSSLADIEKADAALVGDHGTQLYKPAQPLYLFRGTLTAVGSNGSVTVDVTGGNHRAMRLLIGAGRSETFSTGDDTIFLLWQ
Ga0154016_118479Ga0154016_1184791F065371AIAAGVAGLLLWCATLVGVGSVTRFWESMGIVAAAGLVLALSQVVGGWTKGGRTRISPTTFLVAFLPVLVCVGWILMATQPGNGWHEGTIVSWSHSIGIMGLVHSLGLWHGVLAFGFGLVLGMTLDTVPVDEPVAAPAARSEAVVRNDTVRDDETLVADRRGPEWRQRPATGTDADEPLTAEREAARAAEPNTVTVGPRQDVES*
Ga0154016_120261Ga0154016_1202611F051345DAAEEARVQDWQEERLGQLGYGPEIASRVVRAAWLDGNHSDLVHRIEDLVQRGATLDQAARIVASVRTDFDEPVAQGGGRNAAS*
Ga0154016_120271Ga0154016_1202711F015442MTSQWWSGAGQSLRSSERPLRETGSGQAVLAGGLGSFNPLPSKGDSGESTRIRPGNLFAMLSAEYAGGGR
Ga0154016_121866Ga0154016_1218661F067753MKKHFSKTKGSKGNGRVARTTKVDRDEDPTVPPQLLDQLSTGFTLRFTTQGTWPGSYTVTYGNLLDAWFVAGTATTAYQLFDFVKVKKVTVRAMGVADGAHFGPSATVGIEFPGLVGGQFGSGKQRQSSAIGETVPAYVSLKPDPMSQAAQFQPSTSNAVFIVRAVDGLRAALYGVIIDVQVVYKNSGDINPAAVTTARAGLTPGLIYFGGIDGLATANTIAKSTFIPIA*
Ga0154016_121916Ga0154016_1219161F082273LRWTEAAERLPQKVSRIIPGDWGKDESGWLTYPLINRAARSGSGGRIHQFLWRRSRAVSNAKRNCAIRSDKKPLRVESSNLRRFRTQANRSYPEGNRLLLWISTGERLWRPLSGSAKRKTLKGVTK*
Ga0154016_123097Ga0154016_1230972F000817LRWKEAVNRLKPEVSRIIPGDWGKAESGWLARPLLSRIARFGSGGRIHQFL*
Ga0154016_124436Ga0154016_1244361F040354MRNRSIRGLYVLAASVAVSTALGLAGATAASAGVHVRPKATTVCDNNPGTVSPRCTNISNLMLNQDNGPVFIQNATQKGVKAPSLYQNRIVNLRQASNTRTNEDFIIRQVGVLAQLCGTGGVNSIDPTSYACLNYPGFYPVFQGQFAPNSNESGFCVGAISATEGFKVRLERCGTPRTFW
Ga0154016_125737Ga0154016_1257371F065371AGVAGLLLWLATLVGVQSVTRFWESMGIVAAAGLVVALSQVVGGWTKGGGLRLSPGTFLLAFLPVLVCVGWILMATQPGNGWHEGTITSWSHSIGIMGLVHALGLWHGVLAFGFGLVLGMTLDTVPAPVVEPAGAPATGVVRDDETMVADRRGRTWRRRPAAGDDADEPLTAERDAAYTAEPNTVTVGPRSTSDAGE*
Ga0154016_126058Ga0154016_1260581F012204MVEPGLDRHEWESEMQALEDQLGENPAEALPELDRLLERILEESGYELTDPTMRDGDEREVVSEFLAAREITQLAEKDNSDIGPGDVAAAINGYRAVFEYIVSTRSSADEA*
Ga0154016_126357Ga0154016_1263571F005005DELHPKIRGTIVVKGAPPTLTLAASAKVVVAGDKVTLTGVVSNHAAGEQVAIFYQPYPMPNAIQRAVVLTTTGGAFAFDVAPGILTTYQATWKGAFATPTAVQVQPRLSLGRNGGWIIHAYGGHGLAGRDVQFQRLNTVTGQWVTLKKVQLNARSAARVEVTLPKGLNQLRLAMSVNSAGAGLLGGMSSVLIWRQK*
Ga0154016_126477Ga0154016_1264771F000364EVMGVRRYLLVLDMDLLAADEELDLEPINHLVARQEQEPCEVVVMSLVRSRRARLPAMELVLGAHSGKFPVAPQPDHDISAAAEHRMNLAVRHLKTIGCQASGLISDEELVKAVRFETSHQGYDEVMLATGRQERSGLARLMGWDPVHRLRRKWGERLIVFPEGHRPEWPS*
Ga0154016_127327Ga0154016_1273271F001784AKRHNEAIMGQVIHVAFGTEREWEQTRAKTVDGLVAIGTLFGDDESLMRAKADCVYQILRQIVEDVPSVQITTRMPENLSEEQLDLLTGAIKDAALKGIEIAMTHSVQILMASIYDLCTSKLQRRPS*
Ga0154016_127537Ga0154016_1275372F003972PFEGRNESKEVAMQLDPHVAIAAVSTLAAAWLMITAGLQKSALERRRQRRVCPSCGREIQSRVCTTCTG*
Ga0154016_128152Ga0154016_1281522F005991MYDASRGLTLALAAALAGLGLWGATQIGMQTTGRFWLSMAVVAGAGLLIALANHVGTWTKGLRLRMSPGTFALAFLPVLVCVGWILIANQPGHGWQEARLDSWSNSIGILGLVHSIGLWHGVLAFALGLVLGLSLDGVPAPVTETEPAYAGPADAATGPRVADEPVAAERRYATTRDSAPPEAAPPASPTEESAETQTRTRIPSR*
Ga0154016_128650Ga0154016_1286505F024195VNADKAFNVLGAIITVALVTTIVSNKNSAAVIKSFGDAFSGSIKAAMGH*
Ga0154016_128908Ga0154016_1289081F004214MRRIRVILAAVAVPVTVAALVLTAQGAQASTPECLNGTYHGYCGTQIDNGTPALVLDNSKQREAVNNPVIGWTDSSTDPATDWFQLAFAGDNALGVMFFWAPTGVNLDLCMADPGNGHVVLRQCNGSDWQRWIATQVGTTSFFTWKNRATHRILQSGARGAQLVTVTQS
Ga0154016_130920Ga0154016_1309201F005880FQVTFRQLALRPACTARAWHSELARREPFAPRCRLWPTADQCAGARLLAIPIEARFSMRPFALQFRELASRPIPATASTFPAYTFETILRSDPARSAPRSRPRSAFCDLARRDQHAKPVAVPDPRTHDSSSNISSPPGSLDPSGSKPQPDVRTMKLTLAGRPIFLPSPRRGNNFTHHSALRIIGPDPLLPARLAVLR
Ga0154016_133083Ga0154016_1330831F010923NDDPQPKLSLERAAGSERKSGGFVRRTGRQQTRLNALIPRDVKVPEGSGDRGRGQLNQGVEVQRASGSEAAATGAIRDAVVEPKGRTGTEAIWEEAK*
Ga0154016_133563Ga0154016_1335631F093444MTHLDYDALKGKPVFSADGKQVGSITEVYHPNMDMPAARGRHYFLLDPGLIKDLFQGYDQVYLPESAIEGVSADGVQLNLTADQIKQRGQEWAAQPSGFAKYRRG*
Ga0154016_133928Ga0154016_1339281F087553NNTTPQDYTGTVKVDVTRKAASSSVPSVNAQGLAFSSAVPADPQRDVAEPLITSDPEGVLYDCGPTGFSNASDYAEVSLDGGDQFHLMGTPPRGQQGLGGGGDCVVASGLAKNAQGHYEYAYAGLGALTGFTTSRSPDDGHTIANTPVNGNGLPGATSNGALADRQWMTFTDDHTVLLSYNQQEPRNVVVQTSTDGGLTYSAVSSIAAPDADFPGPMHFIPSSHTVVMPWTKGESVNLAVSRDGGATWRVVFRAEHRPTPVATSGTR*
Ga0154016_135712Ga0154016_1357121F032547QQFSFLPACTVEAVQSGSSCVLPLVLPAPYFHSARIKAPGHASRLTPDRNPFLGTAFHSLDKTARFRTTLPRSMLLAYPFGSSLSLPRTRSIRPLVHAVWLAPDCANSTRQTRCPVPSQRPRPLFRPPLPFRAFGPFPIKALTSIPIERFTESTRPIALRSPLPAVLIEPATDQRSRLATSRSAYCLTN
Ga0154016_137457Ga0154016_1374571F002712MTTEQRQSTGSGVARATFGTVLFIAWGVLSVLWVYDAIYELAHSHLTPAITAVVAILLMLVLAVMEGLEVVMIHDWSRLYPDRTARDLAAWLSARQMFVASICVAATILAARNMIHIPFTSYTIKGANSKIFNLIWTTFTVLWFMQILPKHMAAINPVRYLKMTGGAALPVVNVIKAIGISWPAEKTAAAVQSLTGWHPEPTL
Ga0154016_139329Ga0154016_1393291F016001VFSRRLDPIPSWACLLQVFALDAVTTPSRRLSLVALMMTLSSHCHHRPSAIRHRAWLASLEAAYLLEVFDLPAISSCPEISDEVYHSASVNHLAMAGFRLF
Ga0154016_140184Ga0154016_1401842F100674LVAPKPCGVYTRHWTPAARFRGPGRYTLTLRARDKSGLTSLPAHRSFSRG*
Ga0154016_141449Ga0154016_1414493F004332VVSVGTRRGVADIAGITTGGRLAHVLKDAIEWEYRQSVRHLRGWDPVGPLSRPR*
Ga0154016_142165Ga0154016_1421652F041793VIRFSAFLVVVAVGLLVAGVVTSKLLLVYIAIGVSGVALLALGIGAAVNWRELTGKPGTAHPETAEPRTQELSAQGPAPQAAVPEPVTSPVGASQ
Ga0154016_142845Ga0154016_1428453F004297TGLYAGLGAASTMVARRLASKIWRVTTGEEPPTKK*
Ga0154016_142984Ga0154016_1429843F092574VFPDAAAARGGGDPAVSDLITIDAVTTSALGFWTGEVAARPRCVSPLAKIKGTGVPAAGPSVPTIEGTGLPFTAVGAEALGAMWTDQVQGIAVRVPVATVQGDPPRRTPSRC*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.