NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002024

3300002024: Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 1k-1.5k



Overview

Basic Information
IMG/M Taxon OID3300002024 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045862 | Gp0060467 | Ga0016811
Sample NameSinkhole freshwater microbial communities from Lake Huron, USA - Flux 1k-1.5k
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Michigan
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size218067012
Sequencing Scaffolds34
Novel Protein Genes36
Associated Families30

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria7
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum psychrotolerans1
Not Available9
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium1
All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermolimosa1
All Organisms → cellular organisms → Bacteria → PVC group → Kiritimatiellota → Kiritimatiellia → Kiritimatiellales → Pontiellaceae → Pontiella → Pontiella desulfatans1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium2
All Organisms → cellular organisms → Eukaryota2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium → Acetobacterium bakii1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium3

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSinkhole Freshwater Microbial Communities From Lake Huron, Us
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → sinkhole → fresh water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMiddle Island Sinkhole, Lake Huron Michigan, USA
CoordinatesLat. (o)45.19843Long. (o)-83.32721Alt. (m)N/ADepth (m)23
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000324Metagenome / Metatranscriptome1299Y
F002104Metagenome / Metatranscriptome593Y
F002347Metagenome / Metatranscriptome568Y
F004124Metagenome / Metatranscriptome452Y
F007590Metagenome / Metatranscriptome348Y
F009686Metagenome / Metatranscriptome314Y
F010231Metagenome306Y
F013867Metagenome / Metatranscriptome267N
F013907Metagenome / Metatranscriptome267Y
F019814Metagenome / Metatranscriptome227Y
F022421Metagenome / Metatranscriptome214Y
F029927Metagenome187Y
F039667Metagenome / Metatranscriptome163Y
F043160Metagenome / Metatranscriptome157N
F044511Metagenome / Metatranscriptome154Y
F052414Metagenome142Y
F059119Metagenome / Metatranscriptome134Y
F060093Metagenome133Y
F064355Metagenome / Metatranscriptome128Y
F066623Metagenome / Metatranscriptome126Y
F082762Metagenome / Metatranscriptome113Y
F082866Metagenome / Metatranscriptome113Y
F082883Metagenome / Metatranscriptome113Y
F084812Metagenome / Metatranscriptome112Y
F084884Metagenome / Metatranscriptome112Y
F089552Metagenome109Y
F096161Metagenome105N
F096680Metagenome / Metatranscriptome104Y
F096738Metagenome / Metatranscriptome104Y
F104554Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
MIS_1000878All Organisms → cellular organisms → Bacteria1495Open in IMG/M
MIS_1002662All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus1486Open in IMG/M
MIS_1005918All Organisms → Viruses → Predicted Viral1471Open in IMG/M
MIS_1015216All Organisms → cellular organisms → Bacteria1428Open in IMG/M
MIS_1024437All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylovulum → Methylovulum psychrotolerans1389Open in IMG/M
MIS_1034430All Organisms → cellular organisms → Bacteria1349Open in IMG/M
MIS_1037736Not Available1337Open in IMG/M
MIS_1038223All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium1335Open in IMG/M
MIS_1041955All Organisms → cellular organisms → Bacteria → Atribacterota → unclassified Atribacterota → Candidatus Atribacteria bacterium1322Open in IMG/M
MIS_1057930All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermolimosa1267Open in IMG/M
MIS_1061308All Organisms → cellular organisms → Bacteria → PVC group → Kiritimatiellota → Kiritimatiellia → Kiritimatiellales → Pontiellaceae → Pontiella → Pontiella desulfatans1256Open in IMG/M
MIS_1071212Not Available1225Open in IMG/M
MIS_1082754Not Available1191Open in IMG/M
MIS_1086671All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1181Open in IMG/M
MIS_1089436All Organisms → cellular organisms → Bacteria1173Open in IMG/M
MIS_1090645All Organisms → cellular organisms → Bacteria1169Open in IMG/M
MIS_1099153Not Available1147Open in IMG/M
MIS_1110717All Organisms → cellular organisms → Eukaryota1118Open in IMG/M
MIS_1112557All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1113Open in IMG/M
MIS_1112624All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1113Open in IMG/M
MIS_1116620All Organisms → cellular organisms → Bacteria1104Open in IMG/M
MIS_1125154All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1084Open in IMG/M
MIS_1128028Not Available1078Open in IMG/M
MIS_1137343All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium1058Open in IMG/M
MIS_1141224Not Available1050Open in IMG/M
MIS_1143659All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriaceae → Acetobacterium → Acetobacterium bakii1045Open in IMG/M
MIS_1146602All Organisms → cellular organisms → Bacteria1039Open in IMG/M
MIS_1147598All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium1037Open in IMG/M
MIS_1152027All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium1028Open in IMG/M
MIS_1153547Not Available1025Open in IMG/M
MIS_1166329All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → unclassified Ignavibacteria → Ignavibacteria bacterium1001Open in IMG/M
MIS_1168950Not Available1261Open in IMG/M
MIS_1170556Not Available1042Open in IMG/M
MIS_1178902All Organisms → cellular organisms → Eukaryota1031Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
MIS_1000878MIS_10008781F002347MSATTKLQILEQISAIATMERGKLSAYSFKERSGQAGPYHKLQQWSDGQNRTRYVPAEQLPAVEAALAGYAQFESLTRQYADLVIAETRQNFPSKKDLPPPIRLAREEEIQSLIARFQA
MIS_1002662MIS_10026622F002104MKQNKTVAPAITPQEIQLIEQLRQHPEIQARLQSILEIVRNEDGPLKTADEEEELLIQELRRLGSTTMHQWARQAEARVTTELKQQDPTVLSRKKKR*
MIS_1005918MIS_10059181F022421MYRWLRWSDGANVLLADKSEAGWFFVPDRGFDTITNTTHGEYTPEHVHHNYLYTDEYEKSRKQRGKDGANHG*
MIS_1015216MIS_10152163F010231DVHLAGVAPAFTLSQRDSEYARKPPNALSLGRYAHF*
MIS_1024437MIS_10244372F060093MANETYIKKFTNVLFNGEAGAGVAISVEGLANAAGRVSAQYDLGASPRPYLFTWSCEVQFQATPTQGSGLELYIATAPDHDSTQIDGDVGSTDAALGDIDMRRNLQYIGFVTSENAAASEACVKSGTFETTQRYFSLVVYNASGAAVNATDSNFRFDLCPAAYVPAA*
MIS_1034430MIS_10344302F104554MNTFPEVASELNRKRIMAEMDAIRLEEEATKGKTLLDKNLALLGRLMIAGGEKLRNRNHSSQEARTVKLANKAA*
MIS_1037736MIS_10377362F009686MNEKEMFEKSFQRPSNFFKLSGERQWEIDKELGILDWVGGNLTNEEKKRFKDHYKK*
MIS_1038223MIS_10382231F013867VLHTADKMASFNFDKFESEFKHKRLLQDVAQLFGALRNPANPNERLLAIEPGNPLHTFMEKLRIGTDEPAAEFDFEIGVPLTIEEAGRQCRERMVGGALQPVNLPTMLVTAGQRIFFNTAMAAPEVYVEISRPEASDLTSEIGVCHFLDGAKSVIDWSQSLPNLKRLARERVYTARMTQKALHRLVSRFTPEHAHLVSDLTENEMANYLLRTETNRDKTVFRRKELFELTRKPEMELRAPLTTARKLIDLVYPADRPGTEMQRSSAWRMAIISFLPDELAIPISERLKTSNEMCQPITDEVLEEMAYQAE
MIS_1041955MIS_10419552F043160MAKKNFDNLKNSHLGGGLSNLIPEMNENHESKKTKVAYKDVPKTFLMVLEDYEYLQTYSRYMAFHSNSKYPLKRSLSDAIKLLRDAHPEIQ*
MIS_1057930MIS_10579301F084884RFQAFFYASAFFQSDGVPPPAPARVTQTVGTPLAQQGK*
MIS_1061308MIS_10613081F044511SCIIKKTRLTKRAPDAGDSGAISSIFLRLSIFPVGRHSAARPSAGNANR*
MIS_1071212MIS_10712122F066623VKGQSTQPVQVRPKDVSVRLGSYPGDGEGDQAVEAPGTDIRVRWVSKRAGRNASEA*
MIS_1082754MIS_10827542F029927MKPVNSKSLFHLLCITLEKLDSAEIDVATASATAKLVGQCNNLLNYELKRAMIMSNEDFARNHRNLEMKTFDSLPE*
MIS_1086671MIS_10866712F052414MKHENEAEIEARLASIRSQMEAIPAFLDGALLAKRNRTVRKDGSIRVSPEYCTFQYLGADGKRKWKRIPKAARAAVERLVRAGTRYRKLVREYTALMNETSLAGSGKKND*
MIS_1089436MIS_10894362F064355MSMKNKFSIFNSKFFKYLKQLFTNEYPDSKSDVEKRKVAVENNLRWQDDGGPVVENTRPIAQAAENDPAKRSDGAGSDHDERR*
MIS_1089436MIS_10894363F059119MLELIILLLTMQWLLSFFGQSIFPGVPHTGSFIYILSVLIVVLIITKFLTYGI*
MIS_1090645MIS_10906451F002347MERGKLSAYAFEERAGVAGPYYKLQRWEHGKNHTRHVPAEEVAAVQAALAGYAQYQQLTEQYAEAVVAETRQNIAGSKKKRSRLPSFSPKTRKSSS*
MIS_1099153MIS_10991533F082762MFPGARALKLIKNSVNITNSTNPLTLTKNITLTVLDCCAPPPVRLVAHCV*AGAVIAASIASPNPVTIGSAIHLITEIYDNC*
MIS_1110717MIS_11107171F039667AFYGVGLDVKVRELNLQFKLTIQQKGGVGLRSLARIFKRMDFNGNKRLDAAEFE*
MIS_1112557MIS_11125572F019814MNEKLNMKVSPPFEGGVVGMIDYLIYKLFYFPTGVVD*
MIS_1112624MIS_11126242F000324MNTTPIPPKFSFVIDGTRLNIYHPIKGDGLPRHEHIYKHATMCVAGSLRVTKDNVDVVLTKDSNPVILKENEWHELEALEDETIFINVFAEGKY*
MIS_1116620MIS_11166203F089552VNRNPTRESERVRIEKSFDVFGLSEAHRALILEALDSDAWDWFKDCDGCTVVSELHWPTKYFPPCLRHDFDWGTGHDGLTMSKNFFALQRAYGVPRWRSGLRTGAVTVVWYAWQKWKKPNL*
MIS_1125154MIS_11251542F007590MVLNRWIITFCLCLLAGCGPKSGRMEHPENPQGRYRDQIAVAHRLLSQKEEWANRVEWEVRETGYGWEVIAWRIEHPERKGSQRYLPWGYSVIEVDRRLEAVRYRRKG*
MIS_1128028MIS_11280283F084812MAKTSSMKLDDWSKGLLISIISKAISSDKDITQDDIEKLKEIKKQLQEI*
MIS_1137343MIS_11373433F013907KIMKEIIWMELLLLGSSILIFRSVWTFLDSIAWASGGVGLAMLLIVGVVAAVFALRRIETLSGEKGGKAEDG*
MIS_1141101MIS_11411011F082883MGGRSSHFAAPLLLAVITGLIVYVSLYPFRFELDGPSL
MIS_1141224MIS_11412242F096680MELIMETILQSVVFVSMIVVFGVDATRKRREFLKKRNRA*
MIS_1143659MIS_11436591F084884SVHPTLGILARFQAFSYASAFSQSDGVPPPDPARVTQTVGTPLA*
MIS_1146602MIS_11466021F004124RRHLTSKEKAEVLNEHGRSGLSLLAFAEQHGLCYSSLVRWRGRLGNGAEVPVPRRREADPRFVPVKIQSEGLGGDYVLSWATGRSLNIPRQFDTDSLRRLLSVLEAVR*
MIS_1147598MIS_11475981F044511QQAGCLTKRAPDAGDSGAIPSLFLRLSIFPGGRRSAARPSAGNANR*
MIS_1152027MIS_11520271F084884TLGILARFQAFFYASAFSQLDGVPPPNPARVTQTVGTPLA*
MIS_1153547MIS_11535473F010231HWLADVHLAGVAPAFTLSQCDSEYSRKPPNALSLSRYAS*
MIS_1166329MIS_11663291F084884FQAFFYASAFFQSDGVPPPAPARVTQTVSHPLPYQG*
MIS_1168950MIS_11689501F096161DGFSQLSASFSSEAGAVLTFLLTFCVKTKSESGFGAESPTLKY*
MIS_1170556MIS_11705562F096738MAIKKVKIYDMDGTIVDSTHRYKTIKDINGNEKIDLEYWRNNEFRAFDDELLPLAEQYK*
MIS_1178902MIS_11789021F082866KRTLNLLLRKASGSGKICVLSQIEPQTPRLVVSFRQYLQVSILQSYFPQNPKPYGFPGDADLLARF*
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