| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300034414 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0142001 | Gp0401919 | Ga0373905 |
| Sample Name | Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - B1A4.3 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 264342347 |
| Sequencing Scaffolds | 32 |
| Novel Protein Genes | 39 |
| Associated Families | 37 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1 |
| Not Available | 18 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RBG_13_43_8 | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States |
| Type | Engineered |
| Taxonomy | Engineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry → Uranium-Contaminated Sediments Microbial Communities After Treatment In Bioreactor, Oak Ridge, Tennessee, United States |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | USA: Oak Ridge, Tennessee | |||||||
| Coordinates | Lat. (o) | 36.0103 | Long. (o) | -84.2696 | Alt. (m) | N/A | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002839 | Metagenome / Metatranscriptome | 527 | Y |
| F007586 | Metagenome / Metatranscriptome | 348 | Y |
| F008952 | Metagenome / Metatranscriptome | 325 | Y |
| F009540 | Metagenome / Metatranscriptome | 316 | Y |
| F017497 | Metagenome / Metatranscriptome | 240 | Y |
| F018517 | Metagenome / Metatranscriptome | 234 | Y |
| F020376 | Metagenome | 224 | Y |
| F020556 | Metagenome | 223 | Y |
| F020727 | Metagenome / Metatranscriptome | 222 | Y |
| F021446 | Metagenome / Metatranscriptome | 219 | Y |
| F024002 | Metagenome / Metatranscriptome | 208 | Y |
| F026359 | Metagenome / Metatranscriptome | 198 | Y |
| F029499 | Metagenome / Metatranscriptome | 188 | Y |
| F030577 | Metagenome / Metatranscriptome | 185 | Y |
| F034985 | Metagenome / Metatranscriptome | 173 | Y |
| F037436 | Metagenome / Metatranscriptome | 168 | Y |
| F038704 | Metagenome | 165 | Y |
| F038894 | Metagenome / Metatranscriptome | 165 | Y |
| F040696 | Metagenome | 161 | Y |
| F045952 | Metagenome | 152 | Y |
| F055835 | Metagenome | 138 | Y |
| F056130 | Metagenome / Metatranscriptome | 138 | Y |
| F067141 | Metagenome / Metatranscriptome | 126 | Y |
| F067888 | Metagenome | 125 | Y |
| F068393 | Metagenome | 124 | N |
| F077454 | Metagenome | 117 | Y |
| F084411 | Metagenome | 112 | Y |
| F085007 | Metagenome / Metatranscriptome | 111 | Y |
| F088154 | Metagenome | 109 | Y |
| F088270 | Metagenome | 109 | N |
| F092301 | Metagenome / Metatranscriptome | 107 | Y |
| F093160 | Metagenome / Metatranscriptome | 106 | Y |
| F094833 | Metagenome | 105 | N |
| F098464 | Metagenome | 103 | Y |
| F098764 | Metagenome | 103 | N |
| F103216 | Metagenome / Metatranscriptome | 101 | N |
| F104362 | Metagenome / Metatranscriptome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0373905_003702 | All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium | 1867 | Open in IMG/M |
| Ga0373905_009065 | All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium | 1273 | Open in IMG/M |
| Ga0373905_012838 | Not Available | 1100 | Open in IMG/M |
| Ga0373905_022733 | All Organisms → cellular organisms → Archaea | 870 | Open in IMG/M |
| Ga0373905_024652 | Not Available | 843 | Open in IMG/M |
| Ga0373905_027925 | All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium | 802 | Open in IMG/M |
| Ga0373905_031684 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 763 | Open in IMG/M |
| Ga0373905_032895 | Not Available | 751 | Open in IMG/M |
| Ga0373905_036327 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium | 723 | Open in IMG/M |
| Ga0373905_040595 | Not Available | 691 | Open in IMG/M |
| Ga0373905_041093 | All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium RBG_13_43_8 | 688 | Open in IMG/M |
| Ga0373905_041711 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | 684 | Open in IMG/M |
| Ga0373905_046171 | All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes | 658 | Open in IMG/M |
| Ga0373905_049017 | Not Available | 643 | Open in IMG/M |
| Ga0373905_050026 | Not Available | 638 | Open in IMG/M |
| Ga0373905_050093 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 638 | Open in IMG/M |
| Ga0373905_055728 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | 612 | Open in IMG/M |
| Ga0373905_061573 | Not Available | 589 | Open in IMG/M |
| Ga0373905_065936 | Not Available | 574 | Open in IMG/M |
| Ga0373905_068517 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium | 566 | Open in IMG/M |
| Ga0373905_072692 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 553 | Open in IMG/M |
| Ga0373905_073864 | Not Available | 550 | Open in IMG/M |
| Ga0373905_074999 | Not Available | 547 | Open in IMG/M |
| Ga0373905_075311 | Not Available | 546 | Open in IMG/M |
| Ga0373905_079387 | Not Available | 535 | Open in IMG/M |
| Ga0373905_082924 | Not Available | 527 | Open in IMG/M |
| Ga0373905_083893 | Not Available | 524 | Open in IMG/M |
| Ga0373905_086805 | Not Available | 518 | Open in IMG/M |
| Ga0373905_087098 | Not Available | 517 | Open in IMG/M |
| Ga0373905_088243 | Not Available | 515 | Open in IMG/M |
| Ga0373905_090640 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 510 | Open in IMG/M |
| Ga0373905_094221 | Not Available | 502 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0373905_003702 | Ga0373905_003702_188_589 | F020376 | MDGKRGTVHDRWVQRTEAAYRRMFEGKSQEELVTLTQRESMAVLIGKELAEFLLEEHVALDPAAQPTEASATRCPKCGQPGARAVQEDEGLSERRVTTRAGDLRVRRERWHCAKCRIVFFSAGRSAGSGDGRL |
| Ga0373905_009065 | Ga0373905_009065_1_183 | F094833 | MKLLTKEEKILNDGLEKVSEKKDNMDWISSLAFLNSIGCSPFWAKVKLALSLAYYRITAF |
| Ga0373905_012838 | Ga0373905_012838_244_648 | F021446 | MKTLSIALMAAFMLVLAATSTGQAQSAEDIYNDPSPGGKYVYRGCNLAQVIFIRGDKLSEINELTLIIEVQGSPPLRLTFPILAKRQEGNKLILDYQWPPAGDTYEATIIGGSLINRKTKGYLAGIREELFTRE |
| Ga0373905_022733 | Ga0373905_022733_154_870 | F056130 | VRRLKTLPFLGHRGAVSYTVSAIIMTATTVALVLVAFFYAYQVLDKQRGMSEFEVAKKSILAFDDALENVAWKPGATRSTRFTADYGYVQLLPNANSMSISAIVDGQLKPLSNGTYPGSTAVIKYWLSTNFVSFEPNYESYILGNSSSVISSSIDPYGRSAIRQQAGWVTISLDYRVRTMRTAVIKVNGVDTNYVDIWVIRVSTVVSTAWSYVHDFDLLARTMSVRTASYGPYNVSTQS |
| Ga0373905_024652 | Ga0373905_024652_98_547 | F068393 | MPPEELRKMKIEIEKEKPKAIENALKAFDSCPDWLWCPSSATAYREDPIDDSGVSEEGAIWKVLQGYSRPLEEIFTRYGLSVGLPMVPDATITDYPLKVPYRFLEDHALKELNIAVGEAHEGFCRAKRDVEVLERELKETEALEKFESA |
| Ga0373905_027925 | Ga0373905_027925_47_403 | F024002 | MTAMVALIPMAAKGSGSAYLDGAHDPQMIAGQPMGFSISRAVLTENIRNLKAARWSHPLCGLRNRFGCSIEGTDDLGQVQPTDMQIDGGRGGRSVAKKHLDMMEARSRFNQVSGETVP |
| Ga0373905_031684 | Ga0373905_031684_1_693 | F098464 | MPSHHVQRRVALVLILFLVSQATDLSFAVSALDSVSRAADINAPQWREASPTRVIISSTADWGRILFDDLNGTNSNGLRIKTVIDSGWLEGRDSDDQLYAGRKFAWPDTEYDKIVVRKGDMVAFFKGLNDFHYTEVYADLILEVNIDLPRVNIWLMTGGNGTTSFEIVSQDTGGTMWRDIIVANGETQQVKRVMTPQPFFRPGRTESSVVVTWLSIVILFMILLNFPILET |
| Ga0373905_032895 | Ga0373905_032895_68_751 | F017497 | VRQASPAALRLSVWAYAHLLRAYPASFRAEFGGEMALLFSDCCRDEWRSAGPAGVCRLLARAALDTLVSAPPLWAERLEETMKGHSADRRWGFWLADHGLAMGGLALLAVGAATSWWAMSLGWAALAIAFFAWVAEADGLLALPRLGRVAIRTGGLEPPLAFKVRRGERVLFFFCEEDLERGGWSDVYTVLDRPKGTDGFEPCYSLPPAAIPSGWSLRGRVPVDDLRF |
| Ga0373905_036327 | Ga0373905_036327_388_627 | F026359 | MVMRLEELPKMYGPETLSLMDRALEQAWRELKRRGNVVDANAARSRLTTTIVALASVGETDSAKLKRFALNASSGASGL |
| Ga0373905_040595 | Ga0373905_040595_192_392 | F084411 | MRRWSAFLAVAALLAAGCGGGGTSSPTSPATPSGDPSKLVVLDSGNFDTLVLAAPRPSLVKFQSPT |
| Ga0373905_041093 | Ga0373905_041093_494_667 | F088270 | MIPLTLALSLRGRGDYRWFLPLEGRLRRLAEERGGLGEGEMSYYFETVNKCITRNRT |
| Ga0373905_041711 | Ga0373905_041711_51_683 | F018517 | MKILLVLAVVLSVLSVPQITLAQSTPPTEMAVRVTEARKANAALMRQYSWTSRTEVIDQGQVKDVRIDAVNYGPGGQLQRSTLNDQSAPLPLGFLRRRIAEHERQKVETYLTGLRDLFEQYTLPTAGKVQDFLNKATASGPDASGLFEMTGRNVVLLGDTFSLWLNPRTRHPQRIQVATTFQGDPVNLTATFNTPPSGLNYVAYAEVTVPA |
| Ga0373905_043093 | Ga0373905_043093_3_578 | F104362 | MLAWIGLQSGDVDGTIRELSHPLLAPSFSCGDLSPFEQAVLSLSLRAWEGLPPERLDAYPPVKAGMCGGKVLLTALWEAEEMRGEVSRATKVSDVAARRFPSDEGAAALEMKMVGALLRAGQDREALARALTLPERYGPGSMWAQTQPSPVRVNAVAEMAGMLKNLFERKFDEGIRSGERSAMSSAAVLMGE |
| Ga0373905_046171 | Ga0373905_046171_421_657 | F038894 | AANYLLGLATLLQVPQVDPQAEKQKSCDLAKQEATLLDEAEKALTAGQSANPEVAARNLGIIAKYKPRAASMIKAYCK |
| Ga0373905_049017 | Ga0373905_049017_238_633 | F040696 | MDLSKNTSDFFTAENGRKSSFGLGTKDTEDVPVTLEDVFEEEADAAIADAHGVGGPVIDVLAVEEIVLEFLLSDQIGGFAVELGEHADGAGVGLLSPFPFAIELKSLDRFVIPLCLHDTSPFSVRIDFPFQ |
| Ga0373905_050026 | Ga0373905_050026_49_606 | F085007 | LSTTRNAWNWLVLIVFVGIVAVMDYVLLNYLMSHGLEAKSYPIQLGNNQLSIPLLSLTFAGVIIVAIAAWRYMSSTMSISALKEMSELETIRMLRAAGVAIFFFSVVLFGPYIVGASGFWTQMSSIGRAVPQLAGPIQGLLSSIQPAMSLDTLTKLAVSQNTAAAALVAVSGLIGYLQRRIRRPR |
| Ga0373905_050093 | Ga0373905_050093_1_342 | F007586 | MRRTSEKGEGKLGGLIFLVVVLVGALAAWNVAPAYFDHYDFVDKVNEICRMPKYRFRGSGDDGVLKLLMEEVTKRKLQQWIGRESFTVNTTDYNRTIDLYYEREVEILPGWKKT |
| Ga0373905_051424 | Ga0373905_051424_209_631 | F034985 | VATRPEAAGRWRVGDGEEARLTPGAAAAAEVWSRGFLPLRVRSEGSFRLRPAFPGTAVTLGEDLYEVMSETELPEDGLVVYRLRAWPEGEVVRDRVVYGPAFVRAAEAERERARVRARARPWRFLLYPLVGLLPEEAQEQL |
| Ga0373905_053534 | Ga0373905_053534_62_481 | F098764 | MYGDGEPELLNWQVLKGTLRGIGLLHYFAGTSPEGVRLEYIAVIDLWAKKLIAIEPARWGELQAQWAWSDSGVVVVDPQGVPSRVEVRDGAQTRVATYERPAHLKRIKRVSRPILPRFSYRPARRMMPFRYGFNPYAFR |
| Ga0373905_055728 | Ga0373905_055728_226_612 | F092301 | MSTKKRLITRMALWTGTVLVVALLAAGAALALLHSHRLNWEAEQKAERQQVVERSRTYLGELAKRIDKLPVDPTLVGEIESRYFEERASGPLSVWAMGTSGQFLFGVPKETFSRLNAVYDREITPRLTE |
| Ga0373905_057538 | Ga0373905_057538_2_604 | F020556 | HIVVPTAPRPAPPAGDRGVRRVEIGPPDPGFGFGRFTRVELRGRSFVVLTEAVTEPRFTVTTVVTERGVPLRKVESAFPHPLAREDDRDTIRRQLDLQHDDTLQRLDELLLDPSPRRVVWSDQSRSVEAGVLAWAISVVAQLAETQAGTDETARQLRLTHEKALVEDDALRAFQITPFGRVVVDPQHAGRVARRAVRAVAG |
| Ga0373905_060685 | Ga0373905_060685_1_261 | F030577 | RFEEAARAYPSEAAEWLVLTGSFYQRFLDHPDQRPERARFFRDVLEGRGGFEVAARFRQEGWRRPGADEFLDPTIVVLRRSPATSR |
| Ga0373905_061573 | Ga0373905_061573_147_425 | F103216 | MAVMSRNKNHKAAFDWAEGETPLGEECFWARFDYLKLRETLEAIVSAMETTAKEDSPASEAEPASTLRLVVSNDRPEGEENPSADGPEPLPA |
| Ga0373905_064736 | Ga0373905_064736_228_578 | F067888 | KGELLVLARKLKASPGDFVGQQIKLHCRFGGFENKFLNDKNGPKFLSTYYIGLIAQSGKEMNEPLFDHLFISKKEAKEQGVYHLGVNDLITVYGIVNSAYNKEPWIEVYVVKKGWE |
| Ga0373905_065936 | Ga0373905_065936_2_574 | F040696 | CSIAATAKSRKEEAGVTVGEPIAAEEVEGGWGERDVSVLGALSTMDMDHHAGGVDIGDFEVETFVESEAAGIDGGEIGVILKGMDLGKNGSDFFTAENGREASFGLGTEDTEDVPVTLEDVFEEEANAAIADAHGIGGPVIEVLAVEEIILEFLFGDQIGGFGVELGEHADGAGVGLLSPFPLAVELKSLD |
| Ga0373905_066835 | Ga0373905_066835_251_571 | F038704 | MPADPLEVDWEGMVVAFESRSRRITHFFDRSTGDVVQVLEKDAARHSTMGADPRYAALPRDSGERSRGDLEDFAASCEDAGCRRDLSAALASEDFASAYRDALMRHP |
| Ga0373905_068517 | Ga0373905_068517_2_127 | F045952 | MPTAAKLMMSDEPPALMNGSVIPVTGRSETTTPMLMNAWRLI |
| Ga0373905_072692 | Ga0373905_072692_38_238 | F067141 | VVDGLAVLASSCMLADATAAGVQAILSKRDGFRLALDYVKNVPGVHGGLVVLGDRIGLTGNVEIAA |
| Ga0373905_073864 | Ga0373905_073864_235_519 | F020727 | MEKSMMKYQVLIKMTPGNGGEFWDAFKKMPTEPMKGVMIESSWSLFGYWDFVVFFKADSNENSLHFIGEILRGMPGIADTNTSPMTVLKEHKNQ |
| Ga0373905_074999 | Ga0373905_074999_230_412 | F037436 | MPEKQPKRPNNNAKALENWESEGGAPASDDRSTKRKRPRDLNQITKAQPLTDHKQKPKRT |
| Ga0373905_075311 | Ga0373905_075311_218_421 | F088154 | MDSWVLYGTVWFIVWVICLWLVWRMVDRKDLNRALWIILCIFFPVIILIVVALLPPKQRPEPPEMIQ |
| Ga0373905_079387 | Ga0373905_079387_19_459 | F055835 | MKKVILCLLAMGIVGFLGCSSRTELVKNANFPEITNNDYSTVYMFRESRLHGSAIAGPIQINGLYLFRIGNGDCVTFKIPTGQSEIVYVPETNRVKFVSERGKKYYFYLRVDAGKSDSDFRQLSAEEWNEKQKACNWVELKKEKGD |
| Ga0373905_082924 | Ga0373905_082924_1_504 | F093160 | VLSTIIHGNPVPGWWQPTCDANNYCGVRGVADLWPTASACYGIDDEAEEADKMAVDPDGNVYIIDDRYRVAKINGGTGKVDKVLAIPGYDCERSVPDGSTVVLRNTANNIAYMALGQGKLYVTSEQNTLTLIDPRYMTIKAKLTIPKAVELDAITTDPGLNRVYITDE |
| Ga0373905_083893 | Ga0373905_083893_143_523 | F009540 | LHGLAADVRDDEGRVKAVCAVPIPHCAQGFLVQADAGSGGGKLSLGIGARARVDEEDFHGTVGVGLKASLVRTWGSPIGTEPDLTYLGPELDLSVVRVNLSLGVLWRVSGHTGGSALFSWGLGFGL |
| Ga0373905_086805 | Ga0373905_086805_248_517 | F002839 | MGQRRYFEARGEESGEWLVLDAKRHPPRVICRCLGWSAPKNAALIVAALEAHDAELYAKFALEGSGRPDEPPAVKPSLPSGKAEPASAPK |
| Ga0373905_087098 | Ga0373905_087098_1_489 | F077454 | REDLARRKEQWIRRTEQGEDADRVRRELKLKLKTSSLPWLRQRYQAGGRKWSALLERRHGIATKGTAEVKAFLKKAKERDAQVTGAELCVQVWERFEIDLSLSRLNELLHAEGLSNAPGRPQKAAPPEMSSATEREVDNAGAFFPSGRVDRTGRTGGRAKRR |
| Ga0373905_088243 | Ga0373905_088243_396_503 | F029499 | MNDYDAYDAVVMGVLEPILVLSVMAVIAFLVRLSW |
| Ga0373905_090640 | Ga0373905_090640_1_138 | F008952 | MQRLLTEIEKVEIIECEWAKARAKNPKVVMRVDVQDETDESGKPRV |
| Ga0373905_094221 | Ga0373905_094221_126_500 | F020376 | MDGKAGTRHERWVQRTEAAYRRMFEGKSQEELVTLTQRENMAMLIAKELAAFVLEEHVASDSAAQPVEASTTCCPKCGQPGTPAVEGDEALPERTVTTRAGEIRVRRLRWRCGQCRIIFFSARRS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |