NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300021062

3300021062: Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10-13C



Overview

Basic Information
IMG/M Taxon OID3300021062 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0128792 | Gp0220315 | Ga0196974
Sample NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S1_10-13C
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size213311580
Sequencing Scaffolds22
Novel Protein Genes23
Associated Families23

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea3
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → unclassified Pirellulales → Pirellulales bacterium1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2
Not Available5
All Organisms → cellular organisms → Bacteria → Terrabacteria group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan1
All Organisms → cellular organisms → Bacteria → PVC group1
All Organisms → cellular organisms → Bacteria → Acidobacteria2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta1
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSystems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Alternative Ecosystem Assignments
Environment Ontology (ENVO)desert biome → desert → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationUSA: California
CoordinatesLat. (o)33.3049Long. (o)-116.2547Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000265Metagenome / Metatranscriptome1420Y
F001605Metagenome / Metatranscriptome664Y
F019023Metagenome / Metatranscriptome232Y
F021852Metagenome / Metatranscriptome217Y
F023888Metagenome / Metatranscriptome208Y
F028930Metagenome / Metatranscriptome190Y
F034767Metagenome / Metatranscriptome174Y
F038665Metagenome / Metatranscriptome165Y
F044992Metagenome153Y
F046304Metagenome151Y
F058426Metagenome / Metatranscriptome135Y
F058438Metagenome / Metatranscriptome135Y
F061881Metagenome / Metatranscriptome131Y
F062221Metagenome / Metatranscriptome131Y
F063817Metagenome129Y
F073410Metagenome / Metatranscriptome120Y
F074532Metagenome119Y
F074743Metagenome / Metatranscriptome119Y
F077781Metagenome / Metatranscriptome117N
F084728Metagenome / Metatranscriptome112Y
F088469Metagenome / Metatranscriptome109Y
F095566Metagenome / Metatranscriptome105Y
F105394Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0196974_1000248All Organisms → cellular organisms → Bacteria12280Open in IMG/M
Ga0196974_1014298All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea1223Open in IMG/M
Ga0196974_1018079All Organisms → cellular organisms → Bacteria1097Open in IMG/M
Ga0196974_1025818All Organisms → cellular organisms → Bacteria929Open in IMG/M
Ga0196974_1027982All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → unclassified Pirellulales → Pirellulales bacterium895Open in IMG/M
Ga0196974_1038222All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium777Open in IMG/M
Ga0196974_1040314All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea758Open in IMG/M
Ga0196974_1043256Not Available734Open in IMG/M
Ga0196974_1044337All Organisms → cellular organisms → Bacteria → Terrabacteria group726Open in IMG/M
Ga0196974_1045050All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria721Open in IMG/M
Ga0196974_1050130All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan687Open in IMG/M
Ga0196974_1058575All Organisms → cellular organisms → Bacteria → PVC group641Open in IMG/M
Ga0196974_1062546All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium622Open in IMG/M
Ga0196974_1067203All Organisms → cellular organisms → Bacteria → Acidobacteria603Open in IMG/M
Ga0196974_1071612All Organisms → cellular organisms → Bacteria → Acidobacteria585Open in IMG/M
Ga0196974_1083843Not Available545Open in IMG/M
Ga0196974_1087645Not Available534Open in IMG/M
Ga0196974_1089755All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta528Open in IMG/M
Ga0196974_1090764All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea526Open in IMG/M
Ga0196974_1094162Not Available517Open in IMG/M
Ga0196974_1097179All Organisms → cellular organisms → Bacteria → Proteobacteria510Open in IMG/M
Ga0196974_1100166Not Available503Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0196974_1000248Ga0196974_10002481F074743MFDLANDEKRGRLLKAIKSSRDALEPFRRVRKELIRDYVGSWYAEGGARNKTLVNLMNQTARIYTVALAANNPQVLVSTPRVENLPFSRRFEVNLNKLISDMALDQTFRAIVLDAFFCIGCAVVMMRDTDTRFHGLLESEEDVWLDPGEPWLNRVSLDDLILDMPARELTKMRYCGHRYRADYEKVMDEPGYSKKVKDKLKP
Ga0196974_1014298Ga0196974_10142982F019023MRKGYVHPYHSDKYPLMFSHFHYMKTLFEAVGPEQVSPHYESLSRSRRGVIWFFLYVATINSISRFGGWSHNEWLRGMIWHHEFLICFYLGYIEIRHFTYFLGPKFTVFYNVYTRYETQQLCSMWADVSEEE
Ga0196974_1018079Ga0196974_10180792F021852MEDRRGLPVLFFYGPDLVSAAGMTDFEDRIRRMAREAIGELGRDGSEIADVVEPPGADYCVISFTNPELKPIEIPKPLGAGESQELDEIRRALQYRFGS
Ga0196974_1025818Ga0196974_10258181F001605MSLTSPQQTLPEGQSLAQLPLKILEEVLRQLRSTRNDIIRYGVWNIRNLTDDDFNHTDDRKLLGYFRQDLLETRFLSKGRRIDLIQLWHWFDDQMRAIDPLLVDGEEVFLNIQDKDLEKVRKRIQEIQAFLPTLRGDDLDAFRRVKYKLRRTVMRLTYDLHHLFKRLEKYRKN
Ga0196974_1027982Ga0196974_10279821F046304MLTRVQVRTLVVCLTLAVAGCSYWEDSGQAEANIISPGNFRAGSGTIDGVGVLPNARKSGSQAASGGGRKPDPNLYRLSLRMDGGGFQQVDVDNGTFIAGEAVELTNDGRVLRITGTTLNRALRR
Ga0196974_1038222Ga0196974_10382221F105394QDGKAFHYLAMAAARIPSRTRQAVQAIESALQREPMNPVYLKDAGLLCKRAGLTAKAERYLEESLKWDASNPEVQTALAELRESREPGKAGGFSIFGKR
Ga0196974_1040314Ga0196974_10403142F084728LLFRNKYATFKEIKTKTITVSGNRGDSKKAKLFITLQRSPDFFENMKKFNEIREENERKAKALEETKQ
Ga0196974_1043256Ga0196974_10432561F074532LELACLAELAPHLPARYRDTCARLERDERGRITMPPPDIAPSCS
Ga0196974_1044337Ga0196974_10443372F038665VRFLKPETEREAEARLQAERLARDANPERRWEYCVVRLGPKARAEGPLNELGAKGWQLVQLIETEGHLAFYMEREVLPLDESSNGVPSQG
Ga0196974_1045050Ga0196974_10450502F023888ATITDEESLAAALEWLRESYWLKAPARLRGAAEVGD
Ga0196974_1050130Ga0196974_10501302F077781PPPIAAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGRFWPFLALQSLSETPSHARMPRVTVARTSPETLEISPLCAAT
Ga0196974_1058575Ga0196974_10585751F062221MHSRWTYVATGVMAGIIGVLLTMVVGQNREPQAWAAPATVQQGGSDFQMYTGGSQTQTQDILWVVYKRQATPPPDAKGIVASKTERISLCCYQVQNGARQIKLVAVRDISFDMDVVEYGNDKPHVKDIIDELKKSEKR
Ga0196974_1062546Ga0196974_10625462F058426MGEIRLFQICYEGDLTVEVSHVMRRLGAEPNFDQSWQVFLPEGRHAAPLVRYLRSQLGSDARLLVACTQFTTSRDFLLVRHSLTPGADYSELHDALARLGTVVELPFESTFVIQSDDRTDVRT
Ga0196974_1067203Ga0196974_10672031F044992REVGSYGEDNAETARFEGDDVGLPESPIYSNFSKNLWRTHARHGLVQSPKRSRESTSDHMPTQDEPRPD
Ga0196974_1071612Ga0196974_10716121F000265PELRGVQATPEVKEEWKRAYAIYLQAPGDRYDKKKDRTERINYVAQKMNLTRKQAKRRVRNYEAWQRNIKKGLVEP
Ga0196974_1083561Ga0196974_10835611F088469MSAKLSFVPALVAGLLFPLAAQAQDRDDSELARALAQRGWFDLAEEICDRLDKGSSKGLVSYIRAEIKLGQVDREVEFDKATKGLADAVDLLKKFLSESPNHPMALEAQTSIGWVQARKGRLAIDTLEMESD
Ga0196974_1083843Ga0196974_10838432F073410AIWLIPARFLGQSEPWDGNSPAYPLALLGSGLLLGLLAPGKPGAAATGVFLGQLVVLIYRVARSPENSELWLIGVVMLAGYTFVATGLGALLAGLLRRRLGHLDAERRVSERRRLP
Ga0196974_1087645Ga0196974_10876451F058438MVAVPEALAKEPLSPVFASQLETIVPSGNKLTGRILPTERDAIQ
Ga0196974_1089755Ga0196974_10897551F034767MFQLKILKTTKNMFKTSLEILKGVNDIVKGVNATVWGGVEEANKVGRIVKTGLSGADVVIGTSHALEDFSCNDYVCATLDIVGSISSAVGLILGNIPLTKSLTTITGSVTVGCRSVRYYCKNYGTFWGCTAAV
Ga0196974_1090764Ga0196974_10907641F095566MQDVVTRPVYRSDFNWTNYATRSQLRCLIGLLVIRELPIKNFYIRCWIAYGWITFFVLRGLGRGLKYNRPIVMYNHAFNAKSLMNYPDLFFWATTRIPPKNPPVPDAHREWRVR
Ga0196974_1094162Ga0196974_10941621F028930MERSDTQRRRLPFGLERLRLRFGDPALEAAFREDRFRNNITNIRFAFLAGIAVWIAWGVLLRPHMLALADRRLDATMRLGVFIPMLLIGFALTFTPLFRRIWQAMSVVLATATIVLWVYYVSNIQTLPAEYGYVGIILITAFTYTLLR
Ga0196974_1097179Ga0196974_10971792F063817MDPRFLAHYAESGRELKFMGFAVEDMGRDELYAVIGFLLQQVGDDSKVDLRQEAPLGAPYSDPP
Ga0196974_1100166Ga0196974_11001662F061881MSLSRDSRAERKLKAFRRAQFRLKQALERIDFEEDVLLPEIAALKSGKSVLGLPEGAAFDIQIVNDADS
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