Metagenome / Metatranscriptome Family F073410

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073410
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	128 residues
Representative Sequence	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRMGPELPVERRVSDRRA
Number of Associated Samples	105
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	75.83 %
% of genes near scaffold ends (potentially truncated)	43.33 %
% of genes from short scaffolds (< 2000 bps)	87.50 %
Associated GOLD sequencing projects	97
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (69.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (25.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 63.35% β-sheet: 0.00% Coil/Unstructured: 36.65%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
Powered by PDBe Molstar

SCOP family	SCOP domain	Representative PDB	TM-score
d.144.1.6: APH phosphotransferases	d2pula_	2pul	0.63419
a.114.1.1: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain	d1f5na1	1f5n	0.60151
f.38.1.2: LacY-like proton/sugar symporter	d6vbga_	6vbg	0.59027
a.130.1.2: Allosteric chorismate mutase	d5csma_	5csm	0.58623
f.49.1.1: Proton glutamate symport protein	d7ahka1	7ahk	0.58429

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF07883	Cupin_2	24.17
PF01042	Ribonuc_L-PSP	10.83
PF12867	DinB_2	10.00
PF02129	Peptidase_S15	3.33
PF03976	PPK2	2.50
PF02311	AraC_binding	2.50
PF10041	DUF2277	2.50
PF08241	Methyltransf_11	0.83
PF13460	NAD_binding_10	0.83
PF06348	DUF1059	0.83
PF13302	Acetyltransf_3	0.83
PF08530	PepX_C	0.83
PF12680	SnoaL_2	0.83
PF02775	TPP_enzyme_C	0.83
PF03807	F420_oxidored	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	10.83
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	2.50
COG2936	Predicted acyl esterase	General function prediction only [R]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.17 %
Unclassified	root	N/A	30.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.17 %
Unclassified	root	N/A	30.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.17 %
Unclassified	root	N/A	30.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.33 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	11.67 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	11.67 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	8.33 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.67 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	3.33 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	2.50 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.67 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	1.67 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	3.33 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	2.50 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.67 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	3.33 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	2.50 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.67 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Pseudomonas stutzeri group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group	3.33 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2.50 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.67 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Pseudomonas stutzeri subgroup	species subgroup	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup	3.33 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2.50 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.67 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.83 %
Pseudomonas stutzeri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup → Pseudomonas stutzeri	3.33 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	2.50 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.67 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_13434_length_5473_cov_9.319386	All Organisms → cellular organisms → Bacteria	5505	Open in IMG/M
2170459021\|G14TP7Y01BH5X2	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup → Pseudomonas stutzeri	587	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0662154	All Organisms → cellular organisms → Bacteria	1678	Open in IMG/M
3300001305\|C688J14111_10289682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup → Pseudomonas stutzeri	518	Open in IMG/M
3300001686\|C688J18823_10541868	Not Available	744	Open in IMG/M
3300002568\|C688J35102_119112444	Not Available	640	Open in IMG/M
3300004081\|Ga0063454_100443414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	888	Open in IMG/M
3300004081\|Ga0063454_101034002	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	664	Open in IMG/M
3300004153\|Ga0063455_100025664	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300004153\|Ga0063455_101450795	Not Available	532	Open in IMG/M
3300004156\|Ga0062589_102356505	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300004157\|Ga0062590_101390531	Not Available	697	Open in IMG/M
3300004157\|Ga0062590_102515064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup → Pseudomonas stutzeri	546	Open in IMG/M
3300005093\|Ga0062594_101905327	Not Available	631	Open in IMG/M
3300005336\|Ga0070680_100302934	All Organisms → cellular organisms → Bacteria → Proteobacteria	1355	Open in IMG/M
3300005336\|Ga0070680_100562677	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300005337\|Ga0070682_101188791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	643	Open in IMG/M
3300005339\|Ga0070660_100334237	All Organisms → cellular organisms → Bacteria	1246	Open in IMG/M
3300005353\|Ga0070669_101474646	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300005354\|Ga0070675_101939882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	543	Open in IMG/M
3300005366\|Ga0070659_100392104	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300005440\|Ga0070705_100832836	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300005441\|Ga0070700_101015692	All Organisms → cellular organisms → Bacteria → Proteobacteria	683	Open in IMG/M
3300005455\|Ga0070663_100218617	All Organisms → cellular organisms → Bacteria → Proteobacteria	1495	Open in IMG/M
3300005456\|Ga0070678_101900655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas stutzeri group → Pseudomonas stutzeri subgroup → Pseudomonas stutzeri	562	Open in IMG/M
3300005458\|Ga0070681_10149530	All Organisms → cellular organisms → Bacteria	2263	Open in IMG/M
3300005466\|Ga0070685_11279792	All Organisms → cellular organisms → Bacteria → Proteobacteria	560	Open in IMG/M
3300005535\|Ga0070684_101876240	Not Available	565	Open in IMG/M
3300005545\|Ga0070695_101638056	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005546\|Ga0070696_100952824	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300005564\|Ga0070664_100334723	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300005615\|Ga0070702_100167580	All Organisms → cellular organisms → Bacteria	1426	Open in IMG/M
3300005718\|Ga0068866_10792495	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300006755\|Ga0079222_10179931	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300006804\|Ga0079221_10954200	Not Available	637	Open in IMG/M
3300006844\|Ga0075428_101843352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	629	Open in IMG/M
3300006846\|Ga0075430_100211168	All Organisms → cellular organisms → Bacteria → Proteobacteria	1611	Open in IMG/M
3300006871\|Ga0075434_100849559	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300009156\|Ga0111538_12262270	Not Available	683	Open in IMG/M
3300009176\|Ga0105242_11066867	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300009553\|Ga0105249_10476439	All Organisms → cellular organisms → Bacteria	1290	Open in IMG/M
3300009789\|Ga0126307_10018346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5242	Open in IMG/M
3300009840\|Ga0126313_10177567	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300010036\|Ga0126305_10211847	All Organisms → cellular organisms → Bacteria → Proteobacteria	1232	Open in IMG/M
3300010037\|Ga0126304_10100261	All Organisms → cellular organisms → Bacteria → Proteobacteria	1830	Open in IMG/M
3300010037\|Ga0126304_10283708	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1094	Open in IMG/M
3300010039\|Ga0126309_10077037	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1665	Open in IMG/M
3300010040\|Ga0126308_10015822	All Organisms → cellular organisms → Bacteria → Proteobacteria	3957	Open in IMG/M
3300010040\|Ga0126308_10284758	Not Available	1083	Open in IMG/M
3300010041\|Ga0126312_10119363	All Organisms → cellular organisms → Bacteria → Proteobacteria	1814	Open in IMG/M
3300010042\|Ga0126314_10056806	All Organisms → cellular organisms → Bacteria	2560	Open in IMG/M
3300010042\|Ga0126314_10227767	All Organisms → cellular organisms → Bacteria → Proteobacteria	1319	Open in IMG/M
3300010042\|Ga0126314_10768226	Not Available	708	Open in IMG/M
3300010045\|Ga0126311_10051488	All Organisms → cellular organisms → Bacteria	2648	Open in IMG/M
3300010045\|Ga0126311_10109390	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300010166\|Ga0126306_10264623	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1316	Open in IMG/M
3300010371\|Ga0134125_13066728	Not Available	506	Open in IMG/M
3300010373\|Ga0134128_10261796	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1940	Open in IMG/M
3300010373\|Ga0134128_11968311	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	643	Open in IMG/M
3300010375\|Ga0105239_12046192	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300010375\|Ga0105239_12544900	Not Available	597	Open in IMG/M
3300010396\|Ga0134126_11321833	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300010399\|Ga0134127_10342634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1457	Open in IMG/M
3300010399\|Ga0134127_12960294	Not Available	553	Open in IMG/M
3300010401\|Ga0134121_11214471	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	754	Open in IMG/M
3300010403\|Ga0134123_10135319	All Organisms → cellular organisms → Bacteria → Proteobacteria	2017	Open in IMG/M
3300012212\|Ga0150985_106744348	Not Available	512	Open in IMG/M
3300012212\|Ga0150985_108608294	All Organisms → cellular organisms → Bacteria	5650	Open in IMG/M
3300012469\|Ga0150984_118950932	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300012897\|Ga0157285_10349962	Not Available	518	Open in IMG/M
3300012898\|Ga0157293_10271002	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300012907\|Ga0157283_10186561	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300012911\|Ga0157301_10187750	Not Available	686	Open in IMG/M
3300012916\|Ga0157310_10109346	All Organisms → cellular organisms → Bacteria	902	Open in IMG/M
3300012951\|Ga0164300_10398907	Not Available	755	Open in IMG/M
3300012955\|Ga0164298_10533324	Not Available	792	Open in IMG/M
3300012958\|Ga0164299_10794805	Not Available	674	Open in IMG/M
3300012960\|Ga0164301_11902697	Not Available	503	Open in IMG/M
3300012961\|Ga0164302_10452957	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	892	Open in IMG/M
3300012986\|Ga0164304_10131358	All Organisms → cellular organisms → Bacteria	1548	Open in IMG/M
3300012989\|Ga0164305_10445681	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1004	Open in IMG/M
3300013308\|Ga0157375_11255100	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	870	Open in IMG/M
3300014326\|Ga0157380_11284505	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	779	Open in IMG/M
3300015077\|Ga0173483_10584901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	611	Open in IMG/M
3300015077\|Ga0173483_10995794	Not Available	502	Open in IMG/M
3300019361\|Ga0173482_10201804	Not Available	815	Open in IMG/M
3300019362\|Ga0173479_10106989	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1048	Open in IMG/M
3300020202\|Ga0196964_10235658	Not Available	854	Open in IMG/M
3300021062\|Ga0196974_1083843	Not Available	545	Open in IMG/M
3300025912\|Ga0207707_10121216	All Organisms → cellular organisms → Bacteria	2287	Open in IMG/M
3300025917\|Ga0207660_10478948	Not Available	1008	Open in IMG/M
3300025927\|Ga0207687_10245298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1421	Open in IMG/M
3300025935\|Ga0207709_10953586	Not Available	699	Open in IMG/M
3300025942\|Ga0207689_10597013	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	929	Open in IMG/M
3300025945\|Ga0207679_11487097	Not Available	621	Open in IMG/M
3300025981\|Ga0207640_10819833	Not Available	807	Open in IMG/M
3300026067\|Ga0207678_10060946	All Organisms → cellular organisms → Bacteria	3244	Open in IMG/M
3300026075\|Ga0207708_10042313	All Organisms → cellular organisms → Bacteria → Proteobacteria	3472	Open in IMG/M
3300027775\|Ga0209177_10194802	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300027907\|Ga0207428_10051542	All Organisms → cellular organisms → Bacteria	3289	Open in IMG/M
3300027909\|Ga0209382_10008595	All Organisms → cellular organisms → Bacteria	12870	Open in IMG/M
3300028380\|Ga0268265_11170050	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	766	Open in IMG/M
3300028715\|Ga0307313_10182136	Not Available	651	Open in IMG/M
3300028824\|Ga0307310_10379830	Not Available	698	Open in IMG/M
3300028881\|Ga0307277_10106756	All Organisms → cellular organisms → Bacteria	1191	Open in IMG/M
3300028889\|Ga0247827_10346596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	884	Open in IMG/M
3300028889\|Ga0247827_11204129	Not Available	525	Open in IMG/M
3300031094\|Ga0308199_1044434	Not Available	849	Open in IMG/M
3300031548\|Ga0307408_100035698	All Organisms → cellular organisms → Bacteria → Proteobacteria	3490	Open in IMG/M
3300031562\|Ga0310886_10041809	All Organisms → cellular organisms → Bacteria	2017	Open in IMG/M
3300031824\|Ga0307413_11646794	Not Available	571	Open in IMG/M
3300031847\|Ga0310907_10391956	Not Available	722	Open in IMG/M
3300031854\|Ga0310904_10265406	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300031903\|Ga0307407_10957153	Not Available	660	Open in IMG/M
3300031908\|Ga0310900_10282539	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300031940\|Ga0310901_10051570	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1349	Open in IMG/M
3300032000\|Ga0310903_10486212	Not Available	642	Open in IMG/M
3300032002\|Ga0307416_100802787	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300032012\|Ga0310902_10502268	Not Available	791	Open in IMG/M
3300032126\|Ga0307415_100670960	All Organisms → cellular organisms → Bacteria → Proteobacteria	932	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.00%
Host-Associated	Host-Associated	29.17%
Engineered	Engineered	0.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.00%
Plants	Host-Associated → Plants	29.17%
Solid Waste	Engineered → Solid Waste	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.83%
Grass	Engineered → Solid Waste → Grass	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.83%
Loam	Environmental → Terrestrial → Soil → Loam	17.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.33%
Sand	Environmental → Terrestrial → Soil → Sand	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.67%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.83%
Composting	Engineered → Solid Waste → Grass → Composting	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.50%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.67%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.83%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.67%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.50%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	6.67%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	5.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.00%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.00%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	5.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.67%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.67%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.83%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2170459021	Litter degradation NP4	Engineered	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020202	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10	Environmental	Open in IMG/M
3300021062	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1_10-13C	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_00534320	2140918013	Soil	VPRLSRRAVLIVGFVIGLGLWLIPAEFMNASEPWDGNSPAYLVALGISGMLLGFLGPNRPGAAVIGVFLGQLVVLLWRVVASPENSELWLVGVVMLAGYTSVATGIGAMVGGLLRRRLHPDAPVERRVSDRRL
4NP_01156150	2170459021	Switchgrass, Maize And Mischanthus Litter	VWDEEARMARFSRRVVIVAGFIIGLSIWLIPAGFMNVFEPWDGNGPAYPVVLLITGLLLGFLGPSRPAAAVIGVFLGQLAVLLWRVATSPENSELWLVGIVVLAGYTSVATGIGAVLGSRLRRWLAPESGGDRRVADRRL
ICChiseqgaiiDRAFT_06621542	3300000033	Soil	VPRLSRRAVLIVGFVIGLGLWLIPAEFMNASEPWDGNSPAYLVALGISGMLLGFLGPNRPGAAVIGVFLGQLVVLLWRVVASPENSELWLVGVVMLAGYTSVATGIGAMVGGLLRRRLHPDAPVERRVSDRRL*
C688J14111_102896821	3300001305	Soil	ILALSLIIGLALWLIPAGFLHQPEPWDGNGPAYPLALFGSGLLLGFLAPGRTGSIVAGMFLGQLAVLLWRVVTSPDNSELWLVGVVMLAGYTFVATGLGALIGSVLRRRMHPDLPVERRVSDRRA*
C688J18823_105418681	3300001686	Soil	VPHLSRRAILAXSLXIGLALWLIPAGFLHQPEPWDGNGPAYPLALFGSGLLLGFLAPGRTGSIVAGMFLGQLAVLLWRVVTSPDNSELWLVGVVMLAGYTFVATGLGALIGSVLRRRMHPDLPVERRVSDRRA*
C688J35102_1191124441	3300002568	Soil	IGLALWLIPAGFLHQPEPWDGNGPAYPLALFGSGLLLGFLAPGRTGSIVAGMFLGQLAVLLWRVVTSPDNSELWLVGVVMLAGYTFVATGLGALIGSVLRRRMHPDLPVERRVSDRRA*
Ga0063454_1004434142	3300004081	Soil	VPHLSRRAILALSLVIGLALWLIPAGFLHQPEPWDGNGPAYPLALFGSGLLLGFLAPGRTGSIVAGMFLGQLAVLLWRVVTSPDNSELWLVGVVMLAGYTFVATGLGALIGSVLRRRMHPDLPVERRVSDRRA*
Ga0063454_1010340021	3300004081	Soil	VPRLSRRAILALSFVIGLALWLIPAGFLQQPEPWDGNGPAYPLTLLASGLILGFLAPGRPGTIAAGTFLGQLAVLVWRVVTSPENSELWLVGVVMLAGYTFVATGLGALIGSGLRRRMHPELPAERRVSDRR
Ga0063455_1000256641	3300004153	Soil	MPRLSRRAVLVLGFLIGLALWLVPAGFLHQPEPWDGNGPAYPLALLGSGVVLGFLGPGRSAAAVASVFLGQLLVLMWRVIASPENSELWLVGVVMLAGYTFVATGFGALIGSVFRRRVAPEAPERRVSDRRA*
Ga0063455_1014507951	3300004153	Soil	VPRLSRRAILALSFVIGLALWLIPAGFLQQPEPWDGNGPAYPLTLLASGLILGFLAPGRPGTIAAGTFLGQLAVLVWRVVTSPENSELWLVGVVMLAGYTFVATGLGALIGSGLRRRMHPELPAERRVSDRRA*
Ga0062589_1023565051	3300004156	Soil	PALVLHTYEPWDGNTPAYPLALAISGLLLGFLAPGRLGAAVVGLFLGQLAVLIWRVVASPASGELWPVGVVMLAGYTFVAAGIGGLLGSLLRRRLHPDVSVERRVTERRH*
Ga0062590_1013905311	3300004157	Soil	VPRLSRPGVLAVGFVIGLALWLFPALVLHTYEPWDGNTPAYPLALAISGLLLGFLAPGRLGAAVVGLFLGQLAVLIWRVVASPASGELWPVGVVMLAGYTFVAAGIGGLLGSLLRRRLHPDVSVERRVTERRH*
Ga0062590_1025150641	3300004157	Soil	VLRLSRRAILVLSFIVGLALWLIPAGFFHQSEPWDGNGPAYPLALLGTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA*
Ga0062594_1019053272	3300005093	Soil	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLATGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA*
Ga0070680_1003029343	3300005336	Corn Rhizosphere	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLGGYTFVAAGLGALIGGVVRRRTGPELPVERRV
Ga0070680_1005626771	3300005336	Corn Rhizosphere	LSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLATGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALVGGVVRRRTGPELPVERRVSDRRA*
Ga0070682_1011887912	3300005337	Corn Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRMGPELPVERRVSDRRA*
Ga0070660_1003342372	3300005339	Corn Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVAAGLGALIGGVVRRRTGPELPAERRVSDRRV*
Ga0070669_1014746461	3300005353	Switchgrass Rhizosphere	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLGQLAVLLWRVFASPENSELWLVGVVMLGGYTFVATGVGALIGGVVR
Ga0070675_1019398821	3300005354	Miscanthus Rhizosphere	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGP
Ga0070659_1003921042	3300005366	Corn Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGAGALIGGVVRRRMGPELPVERRVSDRRA*
Ga0070705_1008328361	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	AGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV*
Ga0070700_1010156922	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLGGYTFVAAGLGALIGGVVRRRTGPELP
Ga0070663_1002186173	3300005455	Corn Rhizosphere	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA*
Ga0070678_1019006551	3300005456	Miscanthus Rhizosphere	GVPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV*
Ga0070681_101495303	3300005458	Corn Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGSGLLLGFLAPGRPGAIVAGMFLGQLAVLLWRVISSPENSELWLVGVVMLGGYTFVAAGLGALIGGVVRRRTGPELPAERRVSDRRV*
Ga0070685_112797922	3300005466	Switchgrass Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLATGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALI
Ga0070684_1018762402	3300005535	Corn Rhizosphere	VPRLSRRAVLALSSIIGLALWLIPAGFLHQPVPWNGSGPAYPLTLFGCGLVLGFLAPGRSGAIVAGTFLGQLAVLLWLVVASRENRALWLVEVVMLAGYTFVATGLGALIGSVLRRRMHPDLPVE
Ga0070695_1016380562	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV*
Ga0070696_1009528242	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	AGFLHQSEPWDGNGPAYPLALLATGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV*
Ga0070664_1003347232	3300005564	Corn Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLVTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA*
Ga0070702_1001675803	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV*
Ga0068866_107924951	3300005718	Miscanthus Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLATGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRMGPELPVERRVSDRRA*
Ga0079222_101799312	3300006755	Agricultural Soil	MARFSRRVVIVAGFIIGLGIWLIPAGFMNVFEPWDGNGPAYPLVLLITGLLLGFLGPSRPAAAVIGVFLGQLAVLLWRVATSPENSELWLVGIVVLAGYTSVATGIGAVLGSRLRRWLAPEPGVERRVADRRL*
Ga0079221_109542001	3300006804	Agricultural Soil	GIWLIPAGFMNVFEPWDGNGPAYPLVLLITGLLLGFLGPSRPAAAVIGVFLGQLAVLLWRVATSPENSELWLVGIVVLAGYTSVATGIGAVLGSRLRRWLAPEPGVERRVADRRL*
Ga0075428_1018433521	3300006844	Populus Rhizosphere	VPRLSRRAVLLMGFCIGLALWLIPARFLGQSEPWDGNSPAYPLALFVTGLLLGLLAPGRPGAVATGVFLGQLTVLLVRVATSPENSELWLVGVVMLAGYTFVATGIGALLG
Ga0075430_1002111684	3300006846	Populus Rhizosphere	VPRLSRRAVLLMGFCIGLALWLIPARFLGQSEPWDGNSPAYPLALFVTGLLLGLLAPGRPGAVATGVFLGQLTVLLVRVATSPENSELWLVGVVMLAGYTFVATGIGALLGGLVRRRLAGPDPDRRVSDRRT*
Ga0075434_1008495592	3300006871	Populus Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLVTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRMGPELPVERRVSDRRA*
Ga0111538_122622702	3300009156	Populus Rhizosphere	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIAAGMFLGQLAVLLWRVFASPENSELWLVGVVMLGGYTFVAAGLGALLGGVVRRRMGPEL
Ga0105242_110668672	3300009176	Miscanthus Rhizosphere	VPRLSRRAILALSFIICLALWLIPAGFLHQSEPWDGNGPAYPLALLATGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA*
Ga0105249_104764392	3300009553	Switchgrass Rhizosphere	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLGQLAVLLWRVFASPENSELWLVGVVMLGGYTFVAAGLGALLGGVVRRRMGPELPVERRVSDRRV*
Ga0126307_100183465	3300009789	Serpentine Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQPEPWDGNGPAYPLALLGSGLLLGFLAPGRTGTIVAGMFLGQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGLGALIGSVLRRRIGPELPVERRVSDRRI*
Ga0126313_101775673	3300009840	Serpentine Soil	LSRRAVLALSFIIGLALWLIPAGFLHQPEPWDGNGPAYPLALLGSGLLLGFLTPGRTGTIVAGVFLGQLAVLLWRVFAIPENSALWLVGVVMLAGYTFVATGLGALIGSVLRRRMHPELPVERRVSDRRV*
Ga0126305_102118471	3300010036	Serpentine Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQPEPWDGNGPAYPLALLGSGLLLGFLTPGRTGTIVAGVFLGQLAVLLWRVFAIPENSALWLVGVVMLAGYTFVATGLGALIG
Ga0126304_101002614	3300010037	Serpentine Soil	LSRRAVLALSFIIGLALWLIPAGLLHQPEPWDGNGPAYPLALLGSGLLLGFLTPGRTGTIVAGVFLGQLAVLLWRVFAIPENSALWLVGVVMLAGYTFVATGLGALIGSVLRRRMHPELPVERRVSDRRV*
Ga0126304_102837081	3300010037	Serpentine Soil	GFLHQPEPWDGNGPAYPLALLGSGLLLGFLAPGRTGTIVAGMFLGQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGLGALIGSVLRRRMGPELPVERRLSDRRI*
Ga0126309_100770372	3300010039	Serpentine Soil	LPRLSRRAVLVLGFFIGLALWLVPAGFLHQPEPWDGNGPAYPLALLGSGFVLGFFGPGRSAAAVASVFLGQLLVLLWRVIASPENSALWLVGVVMLAGYTFVATGFGAILGSVFRRRVGPDAPERRVSDRRA*
Ga0126308_100158228	3300010040	Serpentine Soil	LSRRAILALSFIIGLALWLIPAGFLHQPEPWDGNGPAYPLALLGSGLLLGFLTPGRTGTIVAGVFLGQLAVLLWRVFAIPENSALWLVGVVMLAGYTFVATGLGALIGSVLRRRMHPELPVERRVSDRRV*
Ga0126308_102847581	3300010040	Serpentine Soil	RRTVLAIGFVIGLALWLIPATFMNQSEPWDGNGPAYPIALLCGGLLLGFFGPGRAGAAVAGVFLGQLVVLVWRVVAGPENSELWLIGVVMLAGYTFVASGVGALLGSLLRRRLAPDSQGDRRVTDRRV*
Ga0126312_101193631	3300010041	Serpentine Soil	LSRRAILALSFIIGLALWLIPAGFLHQPEPWDGNGPAYPLALLGSGLLLGFLTPGRTGTIVAGVFLGQLAVLLWRVVAIPENSALWLVGVVMLAGYTFVATGLGALIGSVLRRRMHPELPVERRVSDRRV*
Ga0126314_100568062	3300010042	Serpentine Soil	LPRLSRRAVLVLGFFIGLALWLVPAGFLNQPEPWDGNGPAYPLALLGSGFVLGFFGPGRSAAAVASVFLGQLLVLLWRVIASPENSALWLVGVVMLAGYTFVATGFGALLGSVFRRRVGPDAPERRVSDRRT*
Ga0126314_102277671	3300010042	Serpentine Soil	LSRRAILALSFIIGLALWLIPAGFLHQPEPWDGNGPAYPLALLGSGLLLGFLTPGRTGTIVAGVFLGQLAVLLWRVFAIPENSALWLVGVVMLAGYTFVATGLGALIGSVLRRRMHPEL
Ga0126314_107682262	3300010042	Serpentine Soil	LSRRAVLALSFIIGLALWLIPAGFLHQPEPWDGNGPAYPLALLGSGLLLGFLTPGRTGTIVAGVFLGQLAVLLWRVFAIPENSALWLVGVVMLAGYTFVATGLGALIGSVLRRRMHPE
Ga0126311_100514882	3300010045	Serpentine Soil	LPRLSRRAVLVLGFFIGLALWLVPAGFLNQPEPWDGNGPAYPLALLGSGLVLGFFGPGRSAAAVASVFLGQLLVLLWRVIASPVNSALWLVGVVMLAGYTFVATGFGALLGSVFRRRVGPDAADRRVSDRRT*
Ga0126311_101093903	3300010045	Serpentine Soil	LSRRAILALSFIIGLALWLIPAGFLHQPEPWDGNGPAYPLALLGSGLLLGFLTPGRTGTIVAGVFLGQLAVLLWRVFAIPENSALWLVGVVMLAGYTFVATGAGALIGSVLRRRMHPELPVERRVSDRRV*
Ga0126306_102646233	3300010166	Serpentine Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQPEPWDGNGPAYPLVLLGSGLLLGFLAPGRTGTIVAGMFLGQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGLGALIGSVLRRRMGPELPVERRLSDRRI*
Ga0134125_130667281	3300010371	Terrestrial Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLVTGLLLGFLAAGRPGTVVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRMGPELPVERRVSDRRA*
Ga0134128_102617962	3300010373	Terrestrial Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV*
Ga0134128_119683111	3300010373	Terrestrial Soil	RMARFSRRVVIVAGFIIGLGIWLIPAGFMNVFEPWDGNGPAYPLVLLITGLLLGFLGPSRPAAAVIGVFLGQLAVLLWRVVTSPENSELWLVGIVVLAGYTSVATGIGAVLGSRLRRWLAPEVGSDRRVADRRL*
Ga0105239_120461921	3300010375	Corn Rhizosphere	MARFSRRVVIVAGFIIGLAIWLIPAGFMNVFEPWDGNGPAYPLVLLITGLLLGFLGPSRPAAAVIGVFLGQLAVLVWRVVTSPENSELWLVGIVVLAGYTSVATGIGTVLGSRLRRW
Ga0105239_125449002	3300010375	Corn Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVAAGLGALIGGVVRRRTGPELPVERRV
Ga0134126_113218332	3300010396	Terrestrial Soil	MARFSRRVVIVAGFIIGLGIWLIPAGFMNVFEPWDGNGPAYPLVLLITGLLLGFLGPSRPAAAVIGVFLGQLAVLLWRVATSPENSELWLVGIVVLAGYTSVATGIGSVVGSRLR
Ga0134127_103426341	3300010399	Terrestrial Soil	VPRLSRRAILALSFFIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGSGLLLGFLAPGRPGAIVAGMFLGQLAVLLWRVISSPENSELWLVGVVMLGGYTFVAAGLGALIGGVVRRRTGPELPAERRVSDRRV*
Ga0134127_129602942	3300010399	Terrestrial Soil	VPRLSRRAILALSFIIGLALWLIPAGLLHQSEPWDGNGPAYPLALLATGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRMGPELPVERRVSDRRA*
Ga0134121_112144712	3300010401	Terrestrial Soil	VGVPRLSRRAILALSFIIGLALWLIPAGSLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV*
Ga0134123_101353195	3300010403	Terrestrial Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVER
Ga0150985_1067443481	3300012212	Avena Fatua Rhizosphere	PRLSRRSVLVLGFLIGLALWLVPAGFLHQPEPWDGNGPAYPLALLGSGVVLGFLGPGRSAAAVASVFLGQLLVLMWRVIASPENSELWLVGVVMLAGYTFVATGFGALIGSVFRRRVAPEAPERRVSDRRA*
Ga0150985_1086082941	3300012212	Avena Fatua Rhizosphere	LIIGLALWLIPAGFLHQPEPWDGNGPAYPLALFGSGLLLGFLAPGRTGSIVAGMFLGQLAVLLWRVVTSPDNSELWLVGVVMLAGYTFVATGLGALIGSVLRRRMHPDLPVERRVSDRRA
Ga0150984_1189509324	3300012469	Avena Fatua Rhizosphere	LIGLALWLVPAGFLHQPEPWDGNGPAYPLALLGSGVVLGFLGPGRSAAAVASVFLGQLLVLMWRVIASPENSELWLVGVVMLAGYTFVATGFGALLGSVFRRRVAPEAPERRVSDRRA*
Ga0157285_103499621	3300012897	Soil	GLALWLIPAGFLHQSEPWDGNGPAYPLALLVTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVSSPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA*
Ga0157293_102710021	3300012898	Soil	VPRLSRRAILALSFFIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGSGLLLGFLAPGRPGAIVAGMFLGQLAVLLWRVISSPENSELWLVGVVMLGGYTFVAAGLGALIGGVVRRRTGPELPVERRHDRDREQVRGDHPGDVLEPAEVADD
Ga0157283_101865612	3300012907	Soil	VLRLSRRAILVLSLIIGLALWLIPASLFHQSEPWDGNGPAYPLALLGTGLLLGFLASGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA*
Ga0157301_101877502	3300012911	Soil	VLRLSRRAILVLSFIVGLALWLIPAGFFHQSEPWDGNAPAYPLALLGTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA*
Ga0157310_101093462	3300012916	Soil	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLGQLAVLLWRVVSSPENSELWLVGVVMLGGYTFVAAGLGALIGGVVRRRTGPELPAERRVSDRRV*
Ga0164300_103989071	3300012951	Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGIIVAGMFLSQLAVLLWRVVSSPENSELWLVGVVMLGGYTFVAAGIGALLGGVVRRRMHPDLPAERRVSDRRA*
Ga0164298_105333243	3300012955	Soil	VGFVIGLALWLFPALVLHTYEPWDGNTPAYPLALSVCGLLLGFLAPGRLGAAVVGIFLGQLAVLIWRVVASPASGELWPVGVVMLAGYTFVAAGVGSLLGGLLRRRLHPDVSVERRVTERRH*
Ga0164299_107948052	3300012958	Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGAIVAGMFLGQLAVLLWRVVSSPENSELWLVGVVMLAGYTFVATGLGALIGGVV
Ga0164301_119026971	3300012960	Soil	VPRLGRAGVVAAGFVIGLALWLFPAFVLHADEPWDGNTPAYPIALALAGLLLGFLAPSRPGAAILGVFLGQLAVLIWRVLAGSSGELWPVGVVMLAGYTFVAVGIGSLLGSLLRRRLHPEVSVERRVAERRH*
Ga0164302_104529571	3300012961	Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLTAGRPGTIVAGMFLGQLAVLLWRVVSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV*
Ga0164304_101313582	3300012986	Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFASPENSELWLVGVVMLGGYTFVAAGIGALLGGVVRRRMHPDLPAERRVSDRRA*
Ga0164305_104456811	3300012989	Soil	LALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIAAGMFLGQLAVLLWRVFASPENSELWLVGVVMLGGYTFVAAGLGALLGGVVRRRMGPELPVERRVSDRRV*
Ga0157375_112551003	3300013308	Miscanthus Rhizosphere	VPRLARRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLGGYTFVAAGLGALLG
Ga0157380_112845052	3300014326	Switchgrass Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA*
Ga0173483_105849012	3300015077	Soil	VPRLSRRAILALSLIIGLAFWLIPAGFLHQSEPWDGNGPAYPLALFVGGLLLGFLAPGRTGTIAAGMFLGQLAVLLWRVISSPENSELWLVGVVMLGGYTFVAAGLGALIGGV
Ga0173483_109957941	3300015077	Soil	VLRLSRRAILVLSFIVGLALWLIPAGFFHQSEPWDGNGPAYPLALLGTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVAAGLGALIGGVVRRRTGPELPVERRVSDRRA*
Ga0173482_102018042	3300019361	Soil	VLRLSRRAILVLSFIVGLALWLIPAGFFHQSEPWDGNGPAYPLALLGTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA
Ga0173479_101069891	3300019362	Soil	VPRLSRRAILALSFFIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLGQLAVLLWRVVSSPENSELWLVGVVMLGGYTFVAAGLGALIGGVVRRRTGPELPVERRVSDRR
Ga0196964_102356582	3300020202	Soil	VPQLSRRAVLLVGFVIGLAIWLIPARFLGQSEPWDGNSPAYPLALLGSGLLLGLLAPGKPGAAATGVFLGQLVVLIYRVARSPENSELWLIGVVMLAGYTFVATGLGALLAGLLRRRLGHVDAERRVSERRRLP
Ga0196974_10838432	3300021062	Soil	AIWLIPARFLGQSEPWDGNSPAYPLALLGSGLLLGLLAPGKPGAAATGVFLGQLVVLIYRVARSPENSELWLIGVVMLAGYTFVATGLGALLAGLLRRRLGHLDAERRVSERRRLP
Ga0207707_101212163	3300025912	Corn Rhizosphere	VPRLSRRAILALSFFIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGSGLLLGFLAPGRPGAIVAGMFLGQLAVLLWRVISSPENSELWLVGVVMLGGYTFVAAGLGALIGGVVRRRTGPELPAERRVSDRRV
Ga0207660_104789482	3300025917	Corn Rhizosphere	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPEKDYQQG
Ga0207687_102452983	3300025927	Miscanthus Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLATGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRV
Ga0207709_109535861	3300025935	Miscanthus Rhizosphere	LSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA
Ga0207689_105970132	3300025942	Miscanthus Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV
Ga0207679_114870971	3300025945	Corn Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLVTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA
Ga0207640_108198332	3300025981	Corn Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLATGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRTGPELPVERRVSDRRA
Ga0207678_100609463	3300026067	Corn Rhizosphere	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV
Ga0207708_100423131	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVAAGVGALIGGVVRRRMGPELPVERRVSDRRV
Ga0209177_101948022	3300027775	Agricultural Soil	MARFSRRVVIVAGFIIGLGIWLIPAGFMNVFEPWDGNGPAYPLVLLITGLLLGFLGPSRPAAAVIGVFLGQLAVLLWRVATSPENSELWLVGIVVLAGYTSVATGIGAVLGSRLRR
Ga0207428_100515426	3300027907	Populus Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLVTGLLLGFLAAGRPGTIVAGVFLGQLAVLLWRVVASPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRMGPELPVERRVSDRRA
Ga0209382_100085956	3300027909	Populus Rhizosphere	VPRLSRRAVLLMGFCIGLALWLIPARFLGQSEPWDGNSPAYPLALFVTGLLLGLLAPGRPGAVATGVFLGQLTVLLVRVATSPENSELWLVGVVMLAGYTFVATGIGALLGGLVRRRLAGPDPDRRVSDRRT
Ga0268265_111700502	3300028380	Switchgrass Rhizosphere	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGGGLLLGFLAAGRPGTIVAGMFLGQLAVLLWRVVSSPENSELWLVGVVMLGGYTFVATGVGALIGGVVRRRMGPELPVERRVSDRRV
Ga0307313_101821361	3300028715	Soil	IGLALWLVPAQFMGVSEPWDGNSPAYPLALLVGGLLLGFLGPSRPGAAVTGLFLGQLTVMLYRVVATPESGESSKLWLVGAVMLAGYTSVASGIGAMIGSLLRRRLHPETPVERRVSDRR
Ga0307310_103798301	3300028824	Soil	VPRLSRRTILLVGFCIGLALWLVPAQFMGVSEPWDGNSPAYPLALLVGGLLLGFLGPSRPGAAVTGLFLGQLTVMLYRVVATPESGESSKLWLVGAVMLAGYTSVASGIGAMIGSLLRRRLHPETPVERRVSDRRA
Ga0307277_101067563	3300028881	Soil	VPRLSRRAILVVGFVIGLCLWLVPAEFMNLSEPWDGNGPAYPLALVLSGFLLGFFAPTHPGAAATGVFLGQLAVLLWRVMSSRENSELWLIGVVMLAGYTFVAAGAGAMVGSLLRRRLHPEIPVERRVSDRRV
Ga0247827_103465962	3300028889	Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLGQLAVLLWRVFASPENSELWLVGVVMLGGYTFVAAGLGALLGGVVRRRMGPELPVERRVSDRRV
Ga0247827_112041291	3300028889	Soil	VSRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGGGLLLGFLAAGRPGTIVAGMFLGQLAVLLWRVVSSPENSELWLVGVVMLAGYTFVATGLGALIGGVVRRRMGPELPVERRVSDRRV
Ga0308199_10444341	3300031094	Soil	EEVLVPRLSRRTILLVGFCIGLALWLVPAQFMGVSEPWDGNSPAYPLALLVGGLLLGFLGPSRPGAAVTGLFLGQLTVMLYRVVATPESGESSKLWLVGAVMLAGYTSVASGIGAMIGSLLRRRLHPETPVERRVSDRRA
Ga0307408_1000356983	3300031548	Rhizosphere	VSRQAVLGLGFVIGLALWLVPAGFLGQPEPWDGNGPAYPLTLLCSGLLLGFIAPGRTGTSVAGVFLGQLAVLLWRVVSSPENSELWLVGVVMLAGYTFVATGVGALLGALLRRRFGPEVAAERRVADRRG
Ga0310886_100418093	3300031562	Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGGGLLLGFLAAGRPGTIVAGMFLGQLAVLLWRVVSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV
Ga0307413_116467941	3300031824	Rhizosphere	VPRLSRSAVLALGFLIGLALWLVPAGFLHQPEPWDGNGPAYPLALLSSGLLLGFFAPGRTGAVVASVFLGQLVVLLWRVVASPGNSELWLVGVVMLAGYTFVATGLGALLGSFLRKRVAPDVDERRMADRRA
Ga0310907_103919562	3300031847	Soil	VSRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGGGLLLGFLAAGRPGTIVAGMFLGQLAVLLWRVVSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV
Ga0310904_102654061	3300031854	Soil	VSRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGLGALIGGVVRRRMGP
Ga0307407_109571532	3300031903	Rhizosphere	LGFVIGLALWLVPAGFLGQPEPWDGNGPAYPLTLLCSGLLLGFIAPGRTGTSVAGVFLGQLAVLLWRVVSSPENSELWLVGVVMLAGYTFVATGVGALLGALLRRRFGPEVAAERRVADRRG
Ga0310900_102825391	3300031908	Soil	FLHQSEPWDGNSPAYPLALLGGGLLLGFLAAGRPGTIVAGMFLGQLAVLLWRVVSSPENSELWLVGVVMLAGYTFVATGLGALIGGVVRRRMGPELPVERRVSDRRV
Ga0310901_100515703	3300031940	Soil	VSRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVERRVSDRRV
Ga0310903_104862122	3300032000	Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNSPAYPLALLGGGLLLGFLAAGRPGTIVAGMFLGQLAVLLWRVVSSPENSELWLVGVVMLAGYTFVATGLGALIGGVVRRRMGPELPVERRVSDRRV
Ga0307416_1008027873	3300032002	Rhizosphere	VPRLSRRAILALSFIIGLALWLIPAGFLHQPEPWDGNGPAYPLALFGSGLLLGFLTPGRTGTIVAGVFLGQLAVLLWRVVAIPENSALWLVGVVMLAGYTFVATGLGALIGSVLRRR
Ga0310902_105022681	3300032012	Soil	VPRLSRRAILALSLIIGLALWLIPAGFLHQSEPWDGNGPAYPLALLGSGLLLGFLAPGRPGTIVAGMFLSQLAVLLWRVFSSPENSELWLVGVVMLAGYTFVATGVGALLGGVVRRRMGPELPVE
Ga0307415_1006709602	3300032126	Rhizosphere	VPQLSRRTVLLVGVVIGLGIWLIPARFLGQSEPWDGNGPAYPLALFISGLLLGLLGPRRPGTAATGVFLGQLVVLLTRVVTNPENSELWLVGVVMLAGYTFVATGLGALLAGLLRRRLSHDLESDRRVSERRH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073410

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences