Sample 3300003563

Overview

Basic Information
IMG/M Taxon OID	3300003563 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110148 \| Gp0072770 \| Ga0007430
Sample Name	Grassland soil microbial communities from Hopland, California, USA - Sample H4_Bulk_46 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	26914964
Sequencing Scaffolds	55
Novel Protein Genes	58
Associated Families	49

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	29
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas fluorescens	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	6
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium URHB0062	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. barranii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Porphyrobacter → unclassified Porphyrobacter → Porphyrobacter sp. AAP82	1
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Endomyxa → Phytomyxea → Plasmodiophorida → Plasmodiophoridae → Spongospora → Spongospora subterranea	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa
Type	Host-Associated
Taxonomy	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere → Avena Fatua Rhizosphere Microbial Communities From Hopland, California, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	grassland biome → grassland area → bulk soil
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere

Location Information
Location	Hopland, California, USA
Coordinates	Lat. (^o)	38.972988	Long. (^o)	-123.116539	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000344	Metagenome / Metatranscriptome	1257	Y
F001291	Metagenome / Metatranscriptome	729	Y
F001758	Metagenome / Metatranscriptome	640	Y
F002654	Metagenome / Metatranscriptome	539	Y
F003556	Metagenome / Metatranscriptome	479	Y
F004796	Metagenome / Metatranscriptome	423	Y
F005082	Metagenome / Metatranscriptome	412	Y
F005905	Metagenome / Metatranscriptome	386	Y
F007533	Metagenome / Metatranscriptome	349	Y
F015482	Metagenome / Metatranscriptome	254	N
F016158	Metagenome / Metatranscriptome	249	Y
F016792	Metagenome / Metatranscriptome	244	Y
F017347	Metagenome / Metatranscriptome	241	Y
F018301	Metagenome / Metatranscriptome	235	Y
F019767	Metagenome / Metatranscriptome	227	Y
F019936	Metagenome / Metatranscriptome	226	Y
F023129	Metagenome / Metatranscriptome	211	Y
F024042	Metagenome / Metatranscriptome	207	Y
F026580	Metagenome / Metatranscriptome	197	Y
F027071	Metagenome / Metatranscriptome	195	Y
F027072	Metagenome / Metatranscriptome	195	Y
F031726	Metagenome / Metatranscriptome	181	N
F032547	Metagenome / Metatranscriptome	179	N
F034588	Metagenome / Metatranscriptome	174	N
F038031	Metagenome / Metatranscriptome	166	Y
F038524	Metagenome / Metatranscriptome	165	Y
F040967	Metagenome / Metatranscriptome	160	Y
F043723	Metagenome / Metatranscriptome	155	Y
F046210	Metagenome / Metatranscriptome	151	N
F050350	Metagenome / Metatranscriptome	145	Y
F062239	Metagenome / Metatranscriptome	131	Y
F065032	Metagenome / Metatranscriptome	128	Y
F066349	Metagenome / Metatranscriptome	126	N
F067018	Metagenome / Metatranscriptome	126	Y
F070802	Metagenome / Metatranscriptome	122	Y
F072673	Metagenome / Metatranscriptome	121	Y
F075517	Metagenome / Metatranscriptome	118	Y
F076910	Metagenome / Metatranscriptome	117	N
F077592	Metagenome / Metatranscriptome	117	Y
F079670	Metagenome / Metatranscriptome	115	N
F083529	Metagenome / Metatranscriptome	112	Y
F089284	Metagenome / Metatranscriptome	109	N
F089744	Metagenome / Metatranscriptome	108	Y
F092083	Metagenome / Metatranscriptome	107	Y
F092500	Metagenome / Metatranscriptome	107	N
F096396	Metagenome / Metatranscriptome	104	Y
F097921	Metagenome / Metatranscriptome	104	N
F102579	Metagenome / Metatranscriptome	101	N
F102731	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0007430J51106_100196	Not Available	831	Open in IMG/M
Ga0007430J51106_100455	Not Available	533	Open in IMG/M
Ga0007430J51106_100563	Not Available	515	Open in IMG/M
Ga0007430J51106_100647	Not Available	633	Open in IMG/M
Ga0007430J51106_101174	Not Available	847	Open in IMG/M
Ga0007430J51106_102244	Not Available	507	Open in IMG/M
Ga0007430J51106_102246	Not Available	739	Open in IMG/M
Ga0007430J51106_102259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
Ga0007430J51106_102455	Not Available	576	Open in IMG/M
Ga0007430J51106_103219	Not Available	1264	Open in IMG/M
Ga0007430J51106_103433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas fluorescens	564	Open in IMG/M
Ga0007430J51106_103704	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	891	Open in IMG/M
Ga0007430J51106_103832	Not Available	530	Open in IMG/M
Ga0007430J51106_104068	Not Available	721	Open in IMG/M
Ga0007430J51106_104378	Not Available	671	Open in IMG/M
Ga0007430J51106_104725	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes → Norzivirales → Fiersviridae → unclassified Fiersviridae → Leviviridae sp.	758	Open in IMG/M
Ga0007430J51106_105057	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	551	Open in IMG/M
Ga0007430J51106_105836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
Ga0007430J51106_106478	Not Available	519	Open in IMG/M
Ga0007430J51106_107126	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	946	Open in IMG/M
Ga0007430J51106_107165	Not Available	527	Open in IMG/M
Ga0007430J51106_107471	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	675	Open in IMG/M
Ga0007430J51106_107775	Not Available	713	Open in IMG/M
Ga0007430J51106_108196	Not Available	619	Open in IMG/M
Ga0007430J51106_111755	Not Available	902	Open in IMG/M
Ga0007430J51106_111842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	840	Open in IMG/M
Ga0007430J51106_112582	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Alismatales → Araceae → Pothoideae → Potheae → Anthurium → Anthurium amnicola	559	Open in IMG/M
Ga0007430J51106_113417	All Organisms → cellular organisms → Bacteria	1283	Open in IMG/M
Ga0007430J51106_113719	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	2072	Open in IMG/M
Ga0007430J51106_114028	Not Available	1061	Open in IMG/M
Ga0007430J51106_114288	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	551	Open in IMG/M
Ga0007430J51106_114759	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
Ga0007430J51106_114919	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Rhizophoraceae → Rhizophora → Rhizophora mucronata	796	Open in IMG/M
Ga0007430J51106_116207	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → unclassified Geodermatophilaceae → Geodermatophilaceae bacterium URHB0062	506	Open in IMG/M
Ga0007430J51106_119935	Not Available	514	Open in IMG/M
Ga0007430J51106_120394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	853	Open in IMG/M
Ga0007430J51106_120426	Not Available	762	Open in IMG/M
Ga0007430J51106_120928	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	2713	Open in IMG/M
Ga0007430J51106_121676	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → unclassified Nitrosopumilus → Nitrosopumilus sp.	714	Open in IMG/M
Ga0007430J51106_121701	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	540	Open in IMG/M
Ga0007430J51106_122230	Not Available	576	Open in IMG/M
Ga0007430J51106_122487	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	999	Open in IMG/M
Ga0007430J51106_122590	Not Available	821	Open in IMG/M
Ga0007430J51106_124337	Not Available	671	Open in IMG/M
Ga0007430J51106_124807	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	982	Open in IMG/M
Ga0007430J51106_126705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. barranii	753	Open in IMG/M
Ga0007430J51106_127167	Not Available	511	Open in IMG/M
Ga0007430J51106_128296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Porphyrobacter → unclassified Porphyrobacter → Porphyrobacter sp. AAP82	557	Open in IMG/M
Ga0007430J51106_130043	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Endomyxa → Phytomyxea → Plasmodiophorida → Plasmodiophoridae → Spongospora → Spongospora subterranea	520	Open in IMG/M
Ga0007430J51106_130517	Not Available	518	Open in IMG/M
Ga0007430J51106_134605	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	782	Open in IMG/M
Ga0007430J51106_135217	Not Available	717	Open in IMG/M
Ga0007430J51106_136119	Not Available	541	Open in IMG/M
Ga0007430J51106_142312	Not Available	528	Open in IMG/M
Ga0007430J51106_176387	Not Available	576	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007430J51106_100196	Ga0007430J51106_1001961	F001758	VTGEKLSQAGWLSSSESGSKGLKAEAEFTSSSGSVRALSVNAKKGLRSKERLETVPNSVK
Ga0007430J51106_100455	Ga0007430J51106_1004551	F032547	GSK*PIQQLSFLPACTVEAVQSRSSCVLPLVLPAPYFRSARIKAPGHASRLTPDRNPYLGTAFHSLDKTARFRTTLPKSMLLAYPFGSSLSLPRTRSIRPLVHAAWLAPNCANSTRQTRCPVPSQRPRPLFRPTLPFRAFGPFPIKALTSIPIERFTESTRPIALRSPLPAVLIEPA
Ga0007430J51106_100563	Ga0007430J51106_1005631	F026580	FELERIAVTQRVNGCYCASARADDSGGLAHKKRVVSQTKEAERQDKVSIRTGKETRPRQGP*
Ga0007430J51106_100647	Ga0007430J51106_1006471	F046210	KIEAEKGFRRTLFEPELVDPNLEINFVNDAGAALKSCNVNS*
Ga0007430J51106_101174	Ga0007430J51106_1011741	F079670	KTIELLFGKIVKKYSNGKVKRTLKKGLKVLEMVKRERNKIIIIDNSLKLSTTLYFS*
Ga0007430J51106_101990	Ga0007430J51106_1019901	F031726	MIAVRHLPWPIAVLLATVILLLAAGLTAGGVGLPGADLPTLAPLAPGWVPEPGTAPRPRTWSEPGNNRLEVWEKIERDAALVIFGEEMTDAERGRCIKALALALAMNDLELSRQCTDPLLAELRQELTRQLGAEAREVL
Ga0007430J51106_102244	Ga0007430J51106_1022441	F000344	MRPKHLHAAESGVGKHTARESERVQACAAGKERVTNAHPH
Ga0007430J51106_102246	Ga0007430J51106_1022462	F024042	MIEPVTRTHESGLVPRSSLSAEGKLRRAETALWGTSFRDEGKHGEPHDRQQGATPLHGRGGESVEVVRNHGDGTRGGLAAHPRRETRRRGSRASDSSAPYDGGAIFGQPQERKSDRQVGPHGSGRDGKVGVKVRRVARGHGFV
Ga0007430J51106_102259	Ga0007430J51106_1022591	F067018	ALALEIEVLEQVCNPGCGTSTTSHRCTCPVSVTTTGSLFTGKTVQ*
Ga0007430J51106_102455	Ga0007430J51106_1024551	F076910	RPRCQARSVQTYQVFRAQAGECRAVATVPYVPKSSRTAGPLMVSRCVSTGAPPVLGGHGDRQLAGSVHTYRVCRGTETLGPSSEVTRLRRSRNPARAILLDLANDTDEHVRPGNPAPANGSPSSNRGRLEEKPITLKARPHRSTVAPITGPRLGGRGSKEAHQKWPDLGVAPRGEGSVLPNVLGAVTEQAIA
Ga0007430J51106_103219	Ga0007430J51106_1032191	F070802	RRPALRIIRILPSAISSILYISSSVLAIMKQYSSIVLFMLVAISGHALGAPLDGSNGDCPGGLANGAQIERGRSVFECRNGNVVAKACVADDLKHIDIGSTTDKKAFRLTCTVNSDGSATLEPTACLHQGQEHKVDEQWEDSTNFYTCKKSETELKVITAGCIDQGKRVPLNQQAAHDDFVFVCNGTVNNGARMMPSGCVKDGKQYNVGDSFEAGNLWFNCTRTGSEKVAAKAAGCVTNGKRVNDGDRYSDNEVIQECDISGQPRLIGCAQRDDKGEIVERRVGCTWVEGPEPFQYEWTCRQESNSAKKVQVRCNYKVGGGVYNIEPGCYRVIDKSAFGCLNNAGTLKLQSFQGDNAEQSAQGAGLHAC*
Ga0007430J51106_103433	Ga0007430J51106_1034331	F034588	GGAGCESSRLPLRFASPVSPTISIRVAPDAHPPVPADFRSESPRSSVPSGCPHRISGLLRRLALSFVARPFPKSPWFLLAQRRRFRPPRVASKPSSSADPYLLPQVAPASASTAGSMITPWLNRTLHPWLAPWMNLRYQSGTSIPDLTSSAFSISIHCPQSADHEHKTKTVTCAFHQAGAAVPISYK
Ga0007430J51106_103640	Ga0007430J51106_1036401	F031726	EPGTAPRPRTWSEPGNNRLEVWEKIERDAALVIFGEEMTDAERGRCIKALALALAMNDLELSRPYTDPLLAELRQELTRQLGAEAREVLADLDERAIVRALYQARMGRHAPLMIGSFRAEVGFATYRHWKTTITEGREDRREERQTMPDTHQPFIRLLVILE*
Ga0007430J51106_103704	Ga0007430J51106_1037041	F005082	VVVSMATYVVFDIPPAGYTNAEALAVWTGFKTLLTATSDAFVTKLLGGES*
Ga0007430J51106_103832	Ga0007430J51106_1038321	F018301	MGMSLKVHQSDGTDNDDQGLSARDRKQLDRLGKLWKSDAERGLKTRHLMGKVLNEQVGPPARRKAHGKRVLELYGAELEIAPSDLNRMGWFSSLFPDFSDFRTQHPEIDSWTRFKTELPNLKPAKGGKARQPVVNPSNPALGGVARSFANLTSKLNGLDIRPVGAER
Ga0007430J51106_104068	Ga0007430J51106_1040681	F001291	MQALLFVLASVVASTLAAPAPACIPDQQKFYWKAPCDGQTFTSRISVSDVKATQGGKTVDEQGGMDISVNLDLAAQINDQYGEIKKPLVDIGILEYAKNLMGKCEWKKVPTLGYLDNIDSCKIVKNCHLTGSPTSLDASVSIKDIAGPLYAGINTNTYYGLTMTFKDDKNPVMCVYSQDVVIKK*
Ga0007430J51106_104378	Ga0007430J51106_1043781	F062239	MKRELPLVVELAEPKLIAGEVDIQLSSQTFTNGRSKSLNVILGVLSDLVQDVTIDDVVA*
Ga0007430J51106_104378	Ga0007430J51106_1043782	F102731	VLVITNDHDEHADAVVKELEKRAVPVFRFHPEEFPSTGSISMEI
Ga0007430J51106_104725	Ga0007430J51106_1047253	F096396	MKSLTSLWSITAHEMAVRCCTSATQDINTVLRRVEHEGLSFLAITLADFGKATQKWLDQGLVVPSDAPSFGRKRRTGFPAFLSGFLGR
Ga0007430J51106_105057	Ga0007430J51106_1050572	F066349	MRGKISVDNNETPLLSIDFKEDIIVDVKDTSIFELIETDNKTESKLSFWDIIKDARDFAEELKNKKLTIILNIKGKETLIIGEKAKPSISQILSKSKNIEIKSVVEAAKMSK
Ga0007430J51106_105836	Ga0007430J51106_1058362	F097921	FDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVILAAIAFLRWRHRRQSQPR*
Ga0007430J51106_106478	Ga0007430J51106_1064781	F024042	MVEPVTRAHVDGLVPDTSLSAEGKLRRAGTALWGTSFRDEGKHGEPQDRQQGANLCSGRGGETVEVVRNHEDGTRGGLAAHPRREPRKRGARASDSSASYDGGAIFGQPQERKSDRQVGR
Ga0007430J51106_107126	Ga0007430J51106_1071261	F002654	LNYQTFNDKVVCQKGNSPEQVFKVPKFLLSESKEVFKLYNQEIG
Ga0007430J51106_107165	Ga0007430J51106_1071651	F015482	PKDMQTLGPRPVTNESDSHLPLAFPMARWLSFDLEERSRFNRAQLVLDAMETAAPRTVGALARDTGLEHHDLGEALALLEDLALVEFEDDEGRELSVSLVATPEEHIGVRFPDGRVRWIFISRPVVEPELAREELN*
Ga0007430J51106_107471	Ga0007430J51106_1074712	F066349	LNIRGKISVDNNETPLLSIDFKEDIIIDIKDTSIFDLIETDSKTETKLSFWDIIKDARDIAEELKNKKLTVILNIKGKETLIIGEKAKPSISQILSKSKNIEIKSIVEAAKISKE
Ga0007430J51106_107775	Ga0007430J51106_1077752	F023129	MKGNLRVKRRDPWHRANALSKTAADPALIGQDVESQSQTCLDLVREPVAQPPAQAS*
Ga0007430J51106_108196	Ga0007430J51106_1081961	F016792	GCSIGCVRPEGHRGGPHHLGDPQGSMMECPVREPCPPKCCYPDMRRSNPTCEAPGTTALLWKHQSGRGPAENGRLNVSERPWLRSVIENRPKVLTGRGQNGMRVGSSIVAVDDGGTVTRRTTGRSLPIRVSTLDNRVSPTRPAARRYPDRKEGG*
Ga0007430J51106_111755	Ga0007430J51106_1117552	F102579	RPACRFPFEGFRPNPVARVMSPPRQPPLMGLLALQSVVCSRPARESGSSHPWAFPFPVSPSVLLRLPSPTTFAVGSSSRKLSLPCRVLPNRARSVAAVRRRRLPGGFVPLRDINQRRHIWSASPTSQTVPSSAFRTPSTVSSATGLVGLFHPTATYRVRSPRVFPPMKPYRLVDGPYPRRWRLPAVRRLPAVRHEPAPRLQGFLFIGIRCDGVAV*
Ga0007430J51106_111842	Ga0007430J51106_1118421	F016792	PVREPCPPKCCYPDMRRSNPTCEASGTTATIWEHQSGGGLAEDEWLNASERPWLRSVIENRPKVLIGRSQNGMRVGSSNGTLDDGGTVTRRTIGRSLPIRFSPLDNRVSPTRPVAARRRYPDRKAGDGGGGRGAAEQAKAAL*
Ga0007430J51106_112582	Ga0007430J51106_1125821	F003556	VPSAHRTFPVPSFGRVLAKLPVRANYNRAVSDNDYMAGKLLSAAYEHRHIHSLRTILMDTAEQLSSTPYMEMRNQAMAYKYTAEELRDLTSKAETIDPDYLGSFLKHVYGIWEDDLVNCYVSVCDGILGFSRVNAQHKGRGKSRKGEVDLVAPRLPRALWDTCFESLITTDVSL*
Ga0007430J51106_113417	Ga0007430J51106_1134171	F083529	RPLLIAGLLLMAFATVAFVIGNFSLTTTTKVLDTGAVQATARQERIVKIPIALDGVFFLGGLAMVVLGARPR*
Ga0007430J51106_113719	Ga0007430J51106_1137191	F005082	DPFRPAENTKVSMSNYIVFDVPVVGYTLAEQLAVYTGFKTQFTATTDALIGKLLAGES*
Ga0007430J51106_114028	Ga0007430J51106_1140281	F038031	MFTDPLSVTYNGSSKSLPRISVEKDYTRYQTADGEFEVLISNNLRSARNGVASASVKLARRIPDPTPGDVFNKDFREIRNVFGLSYSFDALTRAETSVDVPRLRTALLALVDSTFQGRVISGEK*
Ga0007430J51106_114288	Ga0007430J51106_1142881	F005082	VRLDSTKMSPDPFRPAENVELSMSVYMVFDLPSAGYTNAEALAVYTGFKTLISASSDALVTKLLGGES*
Ga0007430J51106_114759	Ga0007430J51106_1147592	F007533	PEHRLTRIIETIRALQIGTPVSKGLVTLLLEPWPDLYCDAMTREGVGWINLLQAAAARIKRPPAVTTTVTSSMP*
Ga0007430J51106_114919	Ga0007430J51106_1149191	F002654	CQKGNSPEQVFKVPKFLLSESKEVFKLYNQEIGLEAAIFLKTS*
Ga0007430J51106_116207	Ga0007430J51106_1162071	F050350	NGGSPPCDHDIFYAFSTDGAATWSNTRDITPRSRFGETAQWQPWSEITKDGSRLWVAFYDRHYGNCEFTGCNDITAAQIRNPTSNHPNYDYTRVTTASMPNLTPANNPVQAGFLGDYMWLDTDSHGDAHIVWADTRPIRGDAPEEDVYYSEVHRSGGGHGGH*
Ga0007430J51106_119935	Ga0007430J51106_1199351	F092500	RGPGILIGGVILVVIGVIVVALSINSLASLSISMPDDISTKSLIKSALNINQTAVKETAKTVGISMGVAFSGMLVATILIINGIIALIGGTVIFFVDRRHNNKLKPKRQHEGSPIG*
Ga0007430J51106_120394	Ga0007430J51106_1203941	F038524	SAFATENLPHYGKCVKGAAGSGPYSNAGCTKLAKVVEKELYKWVPLTTTVKFTSLKKKETGPAVLEGSSGSEISCTVQKQNKEGEYGPGGDEVKNVVGEFQNCETSGFKCKSAGQTEGNIDTFKLHGEPGIVTKVLKEEKNVDGNDLRGQTGPELAAFTCGPVTVKVTGGVVVKAASKGIIKTNKMLNKLEVEFIAEKPGKQVPENWTPNGSGVSNSKHEEINEHLFGDIGKGPEPSGQSLITIQKTVGLVKVELRQCEKNISCPN*
Ga0007430J51106_120426	Ga0007430J51106_1204261	F089284	RILSICIISTLLISVPSTLISFHGVHAQNNLNSSKSNLGIKSIVPKFLQSLRKDISGHYSNPTFGIDDVAFPGGWHGRAIETEFGLLVNMHPGNESQYLRNLLNRENPVINPVILVQSLNNSIINKLSLPNFSISKNCKELAANSTSIINGKTFHVYTIECPFSKLFSRVSTNNQSGASANLGNNNTSTIPPKNFNINGVGQTKVYEYKTPARTYRIMLVVSSPLFSSAQPTAIQRPDISKYVPVIDATVKTL
Ga0007430J51106_120928	Ga0007430J51106_1209281	F019936	QTVTISAVTTPLPRTSVEGDEVTYQSADALIQMLASHDYGKRNRHLLRINHSKLTADPFIPTENVKVSMSCYIVFDVPPAGYTAAEQLAVYTGFKTQFTASSDTLITKLLAGES*
Ga0007430J51106_121676	Ga0007430J51106_1216762	F066349	LKIRGNVSVDFNESPLLSLEFKEDIIIDVKDTSFFDLVETDSKLSFMDLIHDARDVAKVLKDNHLTAILNIKGKETLILGEKAKPSISQIISKSKDIQIKNVIETAKMSKEVLD*
Ga0007430J51106_121701	Ga0007430J51106_1217011	F077592	DYSSFGARELDCPDCSATKLWQLSGELEWRIPLDRKSKVNPVIYFLGGGGFDWFTDFVPYRKQDDGTIVTAGDKTVTGIRGFPAVVISDDGGSTFYHWSVGGGVQLGGFFVESQYKSINTDGASSMHVPILAGWNWTF*
Ga0007430J51106_122230	Ga0007430J51106_1222301	F005905	GGSTPGLVNTSNVEISPAPGSDDDARLDIRIRDSASIIIPNAHVTVLIDKGALALRRDLSSFPNSGYDPIEPIPAAVNFASPFSGDTCDQSNNGWWQQSTSSGGYTWPFLSSSRQQADGYTNSEGVISACVYVDTTLAPGTTPGKINVQAIVESPTQGGLYNPGLGINPYYPLGNNLSLPNYLGVPNIVLTA
Ga0007430J51106_122487	Ga0007430J51106_1224871	F075517	TMFSDPIALTPGASFDVGAVNLPRVSQQGTISVYQAGPLSVNAGSLLRVTASHQYGRRIRRVLRCDYNDNAGSTLISGTTSPRSMSCYVVFDLPNGGQFNATDQLSLFNGLKGTWSATTDALMKKVLGGES*
Ga0007430J51106_122590	Ga0007430J51106_1225902	F004796	MNRLPLPLELTQPVLLAGDLNSQLRDALTGDYDARTQLCSSTGSSVRSATLNFLGIQVDVNADVNADDIIA*
Ga0007430J51106_124337	Ga0007430J51106_1243371	F065032	QNCTGAISTHAAQALNNAPARYDRARFHRPTTPLTRRGCPIGLGVNLDVTVPVPATEMSVAVAGAAPAWIVAIPPTDLLCPLRRLADGSRPSTPEGSRPAFAWSDVATGSTPVRPITGRRSLPPSSFTRSPLDSPCGSSTLTGGLRAYHVALRKHAWVRSRRDAGGSSSAPGEIGAPGPGHVPFGPSLSAPLACL*
Ga0007430J51106_124807	Ga0007430J51106_1248073	F027072	LNKGQVKSLTSLWSLLAEESADRCCTSAIRDIKTVTDRVEHEGLSFLTITLPELGKSAQSWLDQGKAGIHPAFSNERRGSL
Ga0007430J51106_126705	Ga0007430J51106_1267052	F092083	PTGWMERPMKNLLLAAFAALSLATAIVPVANARSTITSDAQATRLQQTGAYGSGG*
Ga0007430J51106_127167	Ga0007430J51106_1271671	F019767	MQKSTDIESCGDQGTLSREEFEQRLGQLAEKWRTHHGAGLEIRHETGKLLNDHYGSPSKRQKRGEGVLKEAAELLQTTESELSRMRRFAFSFESVEVLKEKYPEATTWTAVKELLPKLKSQGRKPKGKSGNGAASPVRRKQAQTVKFGRVKQSLEALTSKLR
Ga0007430J51106_128296	Ga0007430J51106_1282961	F017347	HTYYACLQNASNAHSNAGPNSTNLSNVGPGLITGITGFLSAVDLTTNTMKWQDASMANGTGDCYSGTLATKGNVVFTWWKGRSDVEASLPNQGATQQGAASLLTPGAQLNAYDATTGKKLWVWGIPNDTAISPVVTYMYKGKQYLATYHGVAAPGFPGSTATGQRDQMTVFAL*
Ga0007430J51106_130043	Ga0007430J51106_1300431	F040967	MSNQYLSESVIFGKITLDYDEFDPVSTDSYDESAILTSVLEGNVGELFACAVQFAIVGCGNKNFGSVKISGTEKTLQKIITENNISVNNTLNTKLEPGELTLKRLSRFFRYNIRDFILKRHCESFLFRKYCTSGRPEFVFPGSEYLVDGTNCSGVLEA
Ga0007430J51106_130517	Ga0007430J51106_1305171	F038031	ADREFEVVISNNHAQNPRNGIGLVSIKLTRTLTDPTPGDAFDAFRPIRNSFGFSYSYDLKTRAEASVDVPRLRTALDALVTTTFQGRLISGEK*
Ga0007430J51106_134605	Ga0007430J51106_1346051	F072673	AEGRLFYQVAANAVSPGDDQSMRQQLLRIIEPISGAVSIVSYEEVKDQKGKVQGYKVLANRE*
Ga0007430J51106_135217	Ga0007430J51106_1352171	F027071	QAIEVFSLSSILISSYPLIKRARKKISSNLISFYPQSHSSQAALPCGGAVNSNVIDNNIELKLTTTSLRKQLPLFVQRRHHPSLLFVPILANQPSKQRRQQSNAPSGQRINSLRNYSAGNRFASSPSLHQLLSSLRTKITGNINKAKLNSIGAFLLAKSCAIGSITLASNLTVSNFLLLAKHRIAVPEEISFDLLGPSNRQYCYHRSAAVPPGCPVNTSAPNRRANSCKYCYLAEVIR
Ga0007430J51106_136119	Ga0007430J51106_1361191	F089744	VKIGLNSITWRLYALLKAFGCRLVSDSYRHGDTSIYCQQLITIIYPTGVKGKGVELVG*
Ga0007430J51106_142312	Ga0007430J51106_1423121	F016158	VEKMKRFVLGLGCVLAMVPGVASAALSVTTGPDIEVTAGAIPTGEQFVDLVFNETAPTTNEGLFAYDLYITRDKPGINLLRAEKPDNWVFKAAGAGFSQAGPEFTHLPDLIVVNALGDLLGANQDIENGTKAARVFYTIDPNAAPGTYNIRLANDPGTTLFVSGDTGEAIPVDISD
Ga0007430J51106_176387	Ga0007430J51106_1763871	F043723	KFLSLIHSDDLIRVLSGTFDLSVVPADKHRSVFLMAAHCCLNGPVGTNKPTTFPLLVGTVSISGYIGVRVSNNSWRAFCQDIANILVKNYPQVVESSQQYKVAGGLWPVARSISEVRQQGQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300003563: Grassland soil microbial communities from Hopland, California, USA - Sample H4_Bulk_46 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences