Metagenome / Metatranscriptome Family F097921

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F097921
Family Type	Metagenome / Metatranscriptome
Number of Sequences	104
Average Sequence Length	87 residues
Representative Sequence	ARLALLLLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVMLAAIAFVRWRHRRQSQPR
Number of Associated Samples	82
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	94.23 %
% of genes from short scaffolds (< 2000 bps)	96.15 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.038 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.000 % of family members)
Environment Ontology (ENVO)	Unclassified (27.885 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (31.731 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 83.54% β-sheet: 0.00% Coil/Unstructured: 16.46%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF01230	HIT	10.58
PF04461	DUF520	0.96
PF13432	TPR_16	0.96
PF05987	DUF898	0.96
PF13424	TPR_12	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG1666	Cyclic di-GMP-binding protein YajQ, UPF0234 family	Signal transduction mechanisms [T]	0.96
COG4269	Uncharacterized membrane protein YjgN, DUF898 family	Function unknown [S]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.04 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	87.50 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	85.58 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	18.27 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.92 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.96 %
Unclassified	root	N/A	0.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.27 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1.92 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.96 %
Unclassified	root	N/A	0.96 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459016\|G1P06HT01BQVJV	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	706	Open in IMG/M
3300003563\|Ga0007430J51106_105836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	695	Open in IMG/M
3300003571\|Ga0007419J51692_1046722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300003577\|Ga0007416J51690_1009873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	783	Open in IMG/M
3300004779\|Ga0062380_10015129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2210	Open in IMG/M
3300004800\|Ga0058861_11703711	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	726	Open in IMG/M
3300005332\|Ga0066388_104404618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300005546\|Ga0070696_100627001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	869	Open in IMG/M
3300005713\|Ga0066905_100806766	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300005833\|Ga0074472_11325537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2245	Open in IMG/M
3300005843\|Ga0068860_101614119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M
3300006047\|Ga0075024_100216689	All Organisms → cellular organisms → Bacteria → Proteobacteria	904	Open in IMG/M
3300006173\|Ga0070716_100403057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	984	Open in IMG/M
3300009147\|Ga0114129_12045611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300009176\|Ga0105242_13051103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300010043\|Ga0126380_10450308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	973	Open in IMG/M
3300010089\|Ga0127454_1082082	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300010110\|Ga0126316_1080617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300010133\|Ga0127459_1135985	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300010147\|Ga0126319_1364471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	750	Open in IMG/M
3300010147\|Ga0126319_1435866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	730	Open in IMG/M
3300010304\|Ga0134088_10659319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300010358\|Ga0126370_11089739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	735	Open in IMG/M
3300010360\|Ga0126372_10697440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	990	Open in IMG/M
3300010362\|Ga0126377_10579732	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300010362\|Ga0126377_11436427	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300010362\|Ga0126377_11508669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	746	Open in IMG/M
3300012200\|Ga0137382_10495753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	867	Open in IMG/M
3300012206\|Ga0137380_10498859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1072	Open in IMG/M
3300012209\|Ga0137379_10167746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2107	Open in IMG/M
3300012212\|Ga0150985_109380205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300012212\|Ga0150985_110368290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	720	Open in IMG/M
3300012212\|Ga0150985_113959871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	721	Open in IMG/M
3300012212\|Ga0150985_116375170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300012396\|Ga0134057_1151533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	710	Open in IMG/M
3300012410\|Ga0134060_1298922	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300012410\|Ga0134060_1506003	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300012469\|Ga0150984_102400262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300012469\|Ga0150984_104684679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	527	Open in IMG/M
3300012469\|Ga0150984_110560937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300012469\|Ga0150984_122383691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300012925\|Ga0137419_10217920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1422	Open in IMG/M
3300012927\|Ga0137416_10701352	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	889	Open in IMG/M
3300012948\|Ga0126375_10873981	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300012948\|Ga0126375_11236364	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300012957\|Ga0164303_10617121	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	717	Open in IMG/M
3300012961\|Ga0164302_11778559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300015373\|Ga0132257_100890039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1115	Open in IMG/M
3300015374\|Ga0132255_103613287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	658	Open in IMG/M
3300018054\|Ga0184621_10048025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1418	Open in IMG/M
3300018061\|Ga0184619_10288902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	752	Open in IMG/M
3300019233\|Ga0184645_1165705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	624	Open in IMG/M
3300019254\|Ga0184641_1450360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	823	Open in IMG/M
3300019259\|Ga0184646_1119818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300019259\|Ga0184646_1135751	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300019259\|Ga0184646_1196238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	748	Open in IMG/M
3300019269\|Ga0184644_1200614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300019279\|Ga0184642_1103756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	780	Open in IMG/M
3300019789\|Ga0137408_1308585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300021073\|Ga0210378_10380777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300021151\|Ga0179584_1432097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300021315\|Ga0179958_1013822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	700	Open in IMG/M
3300021951\|Ga0222624_1175104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300021951\|Ga0222624_1291779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	794	Open in IMG/M
3300022195\|Ga0222625_1559266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300022726\|Ga0242654_10175828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	731	Open in IMG/M
3300022726\|Ga0242654_10415533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	519	Open in IMG/M
3300025906\|Ga0207699_10441669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	932	Open in IMG/M
3300025934\|Ga0207686_11628388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	533	Open in IMG/M
3300026557\|Ga0179587_10311128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1017	Open in IMG/M
3300027646\|Ga0209466_1083445	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300027866\|Ga0209813_10167362	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	796	Open in IMG/M
3300027915\|Ga0209069_10474228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	700	Open in IMG/M
3300028381\|Ga0268264_11463934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	694	Open in IMG/M
3300028536\|Ga0137415_10152030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2151	Open in IMG/M
3300028828\|Ga0307312_10968000	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	564	Open in IMG/M
3300030829\|Ga0308203_1037811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	696	Open in IMG/M
3300030829\|Ga0308203_1047662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642	Open in IMG/M
3300030905\|Ga0308200_1064968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	713	Open in IMG/M
3300030989\|Ga0308196_1071315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300030990\|Ga0308178_1063760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	716	Open in IMG/M
3300030990\|Ga0308178_1166561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300030993\|Ga0308190_1067593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	725	Open in IMG/M
3300031092\|Ga0308204_10281354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	550	Open in IMG/M
3300031093\|Ga0308197_10224664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300031094\|Ga0308199_1061529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	757	Open in IMG/M
3300031094\|Ga0308199_1069021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	727	Open in IMG/M
3300031097\|Ga0308188_1015579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	694	Open in IMG/M
3300031114\|Ga0308187_10168030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	745	Open in IMG/M
3300031114\|Ga0308187_10169890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	742	Open in IMG/M
3300031114\|Ga0308187_10216249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	679	Open in IMG/M
3300031114\|Ga0308187_10471259	Not Available	511	Open in IMG/M
3300031123\|Ga0308195_1038644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300031125\|Ga0308182_1010316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300031421\|Ga0308194_10092330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	856	Open in IMG/M
3300031421\|Ga0308194_10131659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	753	Open in IMG/M
3300031424\|Ga0308179_1021716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	710	Open in IMG/M
3300031505\|Ga0308150_1019939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	697	Open in IMG/M
3300032174\|Ga0307470_10175040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1342	Open in IMG/M
3300032180\|Ga0307471_102408801	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300034660\|Ga0314781_052034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300034681\|Ga0370546_044053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	673	Open in IMG/M
3300034818\|Ga0373950_0089826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	651	Open in IMG/M
3300034819\|Ga0373958_0206951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.88%
Host-Associated	Host-Associated	21.15%
Engineered	Engineered	0.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.65%
Plants	Host-Associated → Plants	20.19%
Aquatic	Environmental → Aquatic	19.23%
Human	Host-Associated → Human	0.96%
Solid Waste	Engineered → Solid Waste	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	58.65%
Freshwater	Environmental → Aquatic → Freshwater	14.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.58%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.65%
Sediment	Environmental → Aquatic → Sediment	4.81%
Digestive System	Host-Associated → Human → Digestive System	0.96%
Roots	Host-Associated → Plants → Roots	0.96%
Grass	Engineered → Solid Waste → Grass	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.88%
Sediment	Environmental → Aquatic → Freshwater → Sediment	10.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.65%
Loam	Environmental → Terrestrial → Soil → Loam	5.77%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.81%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.96%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.96%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.96%
Composting	Engineered → Solid Waste → Grass → Composting	0.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.08%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	10.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.77%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.81%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.96%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.96%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.96%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.00%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	10.58%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.69%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	6.73%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	5.77%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	3.85%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.88%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.92%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	1.92%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.96%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.96%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.96%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.96%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.96%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
3300003563	Grassland soil microbial communities from Hopland, California, USA - Sample H4_Bulk_46 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003571	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Bulk_35 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300003577	Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_32 (Metagenome Metatranscriptome, Counting Only)	Host-Associated	Open in IMG/M
3300004779	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010089	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010110	Soil microbial communities from Illinois, USA to study soil gas exchange rates - BV-IL-AGR metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010133	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012396	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021315	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_2_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030989	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_197 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031097	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_183 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031123	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_196 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031125	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_153 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031424	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_150 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031505	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_139 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034660	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2ZMR_01561500	2170459016	Switchgrass, Maize And Mischanthus Litter	TAYPALYAISRGLLLFWLTAPGRTAARPLPLPARLALLVLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSSWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR
Ga0007430J51106_1058362	3300003563	Avena Fatua Rhizosphere	FDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVILAAIAFLRWRHRRQSQPR*
Ga0007419J51692_10467222	3300003571	Avena Fatua Rhizosphere	LLARFALLLLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVILAAIAFLRWRHRRQSQPR*
Ga0007416J51690_10098732	3300003577	Avena Fatua Rhizosphere	VTAPGRTATWPLPLLARFALLLLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVILAAIAFLRWRHRRQSQPR*
Ga0062380_100151294	3300004779	Wetland Sediment	ERPFPLPLRIALMALPLATAWFDYFENERIAQMLAAGPQVAADVVERASFWTQAKALAGATTETICVVMAAIAFVRWRHRRRAQPPQ*
Ga0058861_117037111	3300004800	Host-Associated	ALLVLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSSWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR*
Ga0066388_1044046181	3300005332	Tropical Forest Soil	YLENEGIAAMLGAGPQVSDELVQRTSFWTRAKSFAGLTTELVCVILAAIAFVRWRHRRQSQPRK*
Ga0070696_1006270012	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LATAWFDYFENEGIAAMLAAGPQAGDELIERTSSWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR*
Ga0066905_1008067662	3300005713	Tropical Forest Soil	AYPALYALSRALLLFWVTAPGRTAERPFPLAARLALLALPLATAWFDYFENEGIAAMLAAGPQASDELIERTSFWTRAKSLVGLATELACVTLAAIAFLRWRHRRRAQPR*
Ga0074472_113255371	3300005833	Sediment (Intertidal)	LLLLWLTAPGRTAERPFPLPLRIALMALPLATAWFDYFENERIAQMLAAGPQVAADVVERASFWTQAKALAGATTETICVVMAAIAFVRWRHRRRAQPPQ*
Ga0068860_1016141191	3300005843	Switchgrass Rhizosphere	AARPLPLPARLALLVLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSSWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR*
Ga0075024_1002166892	3300006047	Watersheds	LPLPARLVLLTLPLATAWFDYFENEGIAAMLAADQQASDELIERTSFWTRAKSLAGLATELVCVMLAAIAFVRWRHQRQSQPR*
Ga0070716_1004030571	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	PLPARLALLVLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSSWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR*
Ga0114129_120456111	3300009147	Populus Rhizosphere	WFDYFENDGIAALLAAGPQADSELIERTSFWTRAKSLAGLATELMCIVLAAIAFVRWRHRRQSQPQ*
Ga0105242_130511032	3300009176	Miscanthus Rhizosphere	DTAYPALYAISRGLLLFWLTAPGRTAARPLPLPARLALLVLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSLWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR*
Ga0126380_104503083	3300010043	Tropical Forest Soil	ARLALLLLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVMLAAIAFVRWRHRRQSQPR*
Ga0127454_10820822	3300010089	Grasslands Soil	ARLALLILPLVTAWFDYFENEGIAAMLAAGLQAGDELIERTSFWTRAKSLAVLTTELVCVMLAAIAFVRWRHRRRVQPR*
Ga0126316_10806171	3300010110	Soil	WFDYFENEGIAAMLAAGPQAGDELIERTNSWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR*
Ga0127459_11359851	3300010133	Grasslands Soil	AERPLPLPARLALLALPLATAWFDYFENEGIAAMLAAGPQASDELIERTSFWTRAKSFVGLATELICVVLAAIAFVRWRHRRRVQPR*
Ga0126319_13644712	3300010147	Soil	LPLPARLALLMLPLATAWFDYFENEGIAAMLAAGPQAGDELIARTSFWTRAKSLAGLATESMCVILAAIAFVRWRHRRQSQPR*
Ga0126319_14358662	3300010147	Soil	PARLALLILPLATAWLDYFENEGIAAMLAADQQASDELIERTSFWTRAKSLAGLATELVCVILAAIAFVRWRHRRQSQPR*
Ga0134088_106593192	3300010304	Grasslands Soil	APGRTAERPLPLPARLALLALPLATAWFDYFENEGIAAMLAAGPQASDELIERTSFWTRAKSLVGLATEIVCVILAAIAFVRWRHRRRVQPR*
Ga0126370_110897392	3300010358	Tropical Forest Soil	SRGLLLLWVTAPGRTAARPLPLPARLALLILPLATAGFDYLENQGIAAMLATDQRASDELIERTSIWTQAKSLAALATELVCVILAAIAFVRWRHRRQSQPR*
Ga0126372_106974403	3300010360	Tropical Forest Soil	LALLVLPLATAWFDYFENDGIAAMLAAGPQAGDDLIERTSLWTRAKSLAGLATELVCVSLAAIAYMRWRHRRRAQPR*
Ga0126377_105797321	3300010362	Tropical Forest Soil	TAWFDYFENEGIAAMLAAGPQASDELIERTSFWTRAKSLAGLATELLCVILAAIAFVRWRHRRRAQPQ*
Ga0126377_114364271	3300010362	Tropical Forest Soil	PGRTAERPFPLAARLALLALPLATAWFDYFENEGIAAMLAAGPQASDELIERTSFWTRAKSLVGLATELLCVILAAIAFVRWRHRRRAQQR*
Ga0126377_115086692	3300010362	Tropical Forest Soil	TAPGRTAARPLPLPARLALLILPLATAWFDYFENEGIAAMLAAGERASDELIERASFWTRAKSLAALATELVCVILAAIAFVRWRHQRQSQPR*
Ga0137382_104957531	3300012200	Vadose Zone Soil	MLLILPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVTLAAIAFVRWRHRRQSQP*
Ga0137380_104988593	3300012206	Vadose Zone Soil	WVTAPGRTAARPLPLLARLALLILPLVTAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAALATELACVMLAAIAFVRWRHRRQSQPR*
Ga0137379_101677464	3300012209	Vadose Zone Soil	YAEVQLQLDTAFPALYALSRGLLLLWVTAPGRTAARPLPLLARLALLILPLVTAWFDYFENEGIAAMLAVGPQAADELIERTSFWTRAKSLAGLATELACVVLAAIAFVRWRHRRQSQPR
Ga0150985_1093802052	3300012212	Avena Fatua Rhizosphere	PGRTAAQPLPLLARLALLILPLATAWFDYFENEGIAAMLAAGPQAADDLIERTSFWTRAKSLAGLATELVCVILAAIAFVRWRHRRQSQPR*
Ga0150985_1103682902	3300012212	Avena Fatua Rhizosphere	VTAPGRTATQPLPLLVRLALLLLPLATAWFDYFENDGIAAMLAAGPQAGDELIERTSLWTRAKSLAALATESVCVILAAIAFVRWRHRRQSQPR*
Ga0150985_1139598712	3300012212	Avena Fatua Rhizosphere	WPLPLLLRLASLLLPLATAWFDYFENEGIAAMLAAGPQAGAELIERTSFWTRAKSLAALATELVCIIFTAIAFVRWRHRRQSQPR*
Ga0150985_1163751701	3300012212	Avena Fatua Rhizosphere	LDTVYPAVYAFSRGLLLLWVTAPGRTATRPLPLPARLALLTLPLATAWFDYFENEGIAAMLAAGPQAGDELIERASFWTRAKSLAGLATELLCVTLAAIAFVRWRHRRHSQ*
Ga0134057_11515331	3300012396	Grasslands Soil	HPARLALLALPLATAWFDYFENEGIAAMLAAGPQASDELIERTSFWTRAKSLVGLATELICVVLAAIAFVRWRHRRRAQPR*
Ga0134060_12989221	3300012410	Grasslands Soil	PALYALSRALLLFWVTAPGRTAERPLPLPARLALLALPLATAWFDYFENEGIAAMLAAGPQASDELIERTSFWTRAKSLVGLATEIVCVILAAIAFVRWRHRRRVQPR*
Ga0134060_15060031	3300012410	Grasslands Soil	LATAWFDFFENEGIAAMLAAGPQASDELIERTSFWTSAKSFVGLATELICVVLAAIAFVRWRHRRRVQPR*
Ga0150984_1024002622	3300012469	Avena Fatua Rhizosphere	PLLLRLALLLLPLATAWFDYFENEGIAAMLAAGPQAGAELIERTSFWTRAKSLAALAAELVCIIFAAIAFVRWRHRRQSQPR*
Ga0150984_1046846792	3300012469	Avena Fatua Rhizosphere	ATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVTLAAIAFVRWRHRRQSQA*
Ga0150984_1105609372	3300012469	Avena Fatua Rhizosphere	ARPIPLPARLALLILPLVTAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVMLAAIAFVRWRHRRQSQPQ*
Ga0150984_1223836912	3300012469	Avena Fatua Rhizosphere	LLLPLATAWFDYFENEGIAAMLAAGPQAGDELIERASFWTRAKSLAGLATELVCVVLAAIAFVRWRHRRQAQPR*
Ga0137419_102179204	3300012925	Vadose Zone Soil	RLVLLILPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVMLAAIAFVRWRHRRQSQPR*
Ga0137416_107013523	3300012927	Vadose Zone Soil	SRGMLLFWVTAPGRTAARPLPLLARLALLILPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVTLAAIAFVRWRHRRQSQPR*
Ga0126375_108739812	3300012948	Tropical Forest Soil	PLAARLALLALPLATAWFDYFENEGIAAMLAAGPQASDELIERTSFWTRAKSLVGLATELACVTLAAIAFLRWRHRRRAQPR*
Ga0126375_112363642	3300012948	Tropical Forest Soil	PLAARLALLALPLATAWFDYFENEGIAAMLAAGPQASDELIERASFWTRAKSLVGLATELTCVILAAVAFVRWRHRRRAQRR*
Ga0164303_106171211	3300012957	Soil	PLPARLALLVLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSLWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR*
Ga0164302_117785591	3300012961	Soil	YPALYAISRGLLLFWLTAPGRTAARPLPLPARLALLVLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSLWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR*
Ga0132257_1008900393	3300015373	Arabidopsis Rhizosphere	ALLALPLAAAWFDYFENDGIAALLAAGPQADSELIERTSFWTRAKSLAGLATELMCIVLAAIAFVRWRHRRQSQPQ*
Ga0132255_1036132872	3300015374	Arabidopsis Rhizosphere	LFWLTAPGRTATQPLPLPARFALLALPLATAWFDYFENDGIAAMLAAGPQAANELIERTSLWPRAKSLAGLATELTCIVLAAIAFVRWRHRRQSQPQ*
Ga0184621_100480251	3300018054	Groundwater Sediment	RPLPLPARLALLILPLATAWLDYFENEGIAAMLAADQGASDELIERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRRPSQPR
Ga0184619_102889022	3300018061	Groundwater Sediment	LILPIATAWFDYFENEGIAAMLAVDQQASDDLIERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0184645_11657052	3300019233	Groundwater Sediment	SRGLLLFWVTAPSRTAARPLPLPARLALLILPLATAWLDYFENEGIAAMLAADQQASDELIERTSFWTRGKSLAGLATELVCVILAAIAFVRWRHRRQSQPR
Ga0184641_14503601	3300019254	Groundwater Sediment	AVYALSRGLLLLWVTAPGRTAARPLPLPARLVLLILPLATAWFDYFENEGIAAMLAADQRASDELIERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0184646_11198181	3300019259	Groundwater Sediment	LPLPARLALLMLPLATAWLDYFENEGIAAMLAADQQASDELIERTSFWTRGKSLAGLATELVCVILAAIAFVRWRHRRQSQPR
Ga0184646_11357512	3300019259	Groundwater Sediment	LLILPLATAWFDYFENEGIAAMLAADQRASDELIERTSFWTRVKSLAALATELVCVMLAAIAFVRWRHRRQSQPR
Ga0184646_11962381	3300019259	Groundwater Sediment	LPGRIALLALPVATAWFDYFENAGIAQMLAAGPQVSADVVESASFWTRAKSLAGVTTEVICVILAAIAFVRWRHRRRAQPPR
Ga0184644_12006141	3300019269	Groundwater Sediment	LLILPLATAGFDYFENGGIAAMLAADQRASDELIERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0184642_11037562	3300019279	Groundwater Sediment	VLLILPLATAWFDYFENEGIAAMLAADQRASDELIERTSFWTRVKSLAALATEFVCVMLAAIAFVRWRHRQQSQPR
Ga0137408_13085851	3300019789	Vadose Zone Soil	AVYALSRGLLLFWVTAPGRTATRPLPLPARLSLLILPLATAWFDYFENGGIAAMLAADQRASDELIERTSFWTRAKSLAGLATELVCVMLAAIAFVRWRHRRQSQPR
Ga0210378_103807771	3300021073	Groundwater Sediment	LSRALLLLWVTAPGRTAERPLPLPGRVALLALPIATAWFDYFENAGIAQMLAAGPQVSADVVESASFWTRAKSLAGVTTEVICVILAAIAFVRWRHRRRAQPPR
Ga0179584_14320972	3300021151	Vadose Zone Soil	PARLALLILPLATAWLDYFENEGIAAMLAADQLASDELIERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRKQSQPR
Ga0179958_10138222	3300021315	Vadose Zone Soil	LLFWVTAPGRTAARPLPLLARLALLILPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVTLAAIAFVRWRHRRQSQP
Ga0222624_11751041	3300021951	Groundwater Sediment	AFPAVYALSRGLLLFWVTAPGRTAARPLPLPARLVLLILPLATAWFDNFENGGIAAMLAADQRASDELIERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0222624_12917791	3300021951	Groundwater Sediment	LLFWVTAPGRTAARPLPLPTRLALLMLPLATAWFDYFENEGIAAMLAAGPQAGDELIARTSFWTRAKSLAGLATESMCVILAAIAFVRWRHRRQSQPR
Ga0222625_15592662	3300022195	Groundwater Sediment	ARLVLLILPLATAWFDYFENGGIAAMLAADQRASDELIERTSFWTRAKSLAGLATELVCVIFAAIAFVRWRHRRQSQPR
Ga0242654_101758281	3300022726	Soil	ARLALLMLPLATAWFDYFENQGIAAMLAAGPQAGDELIERTSFWTRAKSIAGLATELACVILAAIAFVRWRHQRQSQP
Ga0242654_104155331	3300022726	Soil	ARLALLMLPLATAWFDYFEHQGIAAMLAAGPQAGDELIERTSFWTRAKSIAGLATEMVCVILAAIAFVRWRHQRQSQPR
Ga0207699_104416693	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	TAPGRTAARPLPLPARLALLVLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSSWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR
Ga0207686_116283881	3300025934	Miscanthus Rhizosphere	AAAADTAYPALYAISRGLLLFWLTAPGRTAARPLPLPARLALLVLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSLWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR
Ga0179587_103111282	3300026557	Vadose Zone Soil	MLLFWVTAPGRTAARPLPLLARLALLILPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRTKSLAGLATELVCVMLAAIAFVRWRHRRQSQPR
Ga0209466_10834452	3300027646	Tropical Forest Soil	FWVTAPGRTAERPFPLAARLALLALPLATAWFDYFENEGIAAMLAAGPQASDELIERTSFWTRAKSLVGLATELACVTLAAIAFLRWRHRRRAQPR
Ga0209813_101673621	3300027866	Populus Endosphere	LTAPGRTATQPLPLPARFALLALPLAAAWFDYFENDGIAALLAAGPQADSELIERTSFWTRAKSLAGLATELMCIVLAAIAFLRWRHRRQSQPQ
Ga0209069_104742281	3300027915	Watersheds	LPLPARLVLLTLPLATAWFDYFENEGIAAMLAADQQASDELIERTSFWTRAKSLAGLATELVCVMLAAIAFVRWRHQRQSQPR
Ga0268264_114639342	3300028381	Switchgrass Rhizosphere	NAARPLPLPARLALLVLPLATAWFDYFENEGIAAMLAAGPQAGDELNERTSLWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR
Ga0137415_101520301	3300028536	Vadose Zone Soil	SRGMLLFWVTAPGRTAARPLPLLARLALLILPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVMLAAIAFVRWRHRRQSQPR
Ga0307312_109680001	3300028828	Soil	SRGLLLFWVTARGRTATRPLPLLARLALLILPLATAWFDYFENEGIAAMLAADQQAGDELIERTSFWTRAKSLAGLATELVCVTLAAIAFVRWRHRRQSQPR
Ga0308203_10378112	3300030829	Soil	FDYFENEGIAAMLAAGPQAGDELIARTSFWTRAKSLAGLATESMCVILAAIAFVRWRHRRQSQPR
Ga0308203_10476622	3300030829	Soil	ARLVLLILPLATAWFDYFENGGIAAMLAADQRASDELIERTSFWTRANSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0308200_10649681	3300030905	Soil	LGLLLLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVSFAAIAFVRWRHRRQSQPR
Ga0308196_10713151	3300030989	Soil	AFPAVYALSRGLLLFWVTAPGRTAARPLPLPARLVLLILPLATAWFDNFENGGIAAMLAADQRASDELIERTSFWTRVKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0308178_10637601	3300030990	Soil	LPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVSFAAIAFVRWRHRRQSQPR
Ga0308178_11665611	3300030990	Soil	LPARLVLLILPLATAWFDYFENGGIAAMLAADQGASDELIERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0308190_10675931	3300030993	Soil	LARLGLLLLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVSFAAIAFVRWRHRRQSQPR
Ga0308204_102813541	3300031092	Soil	ARLVLLILPLATAWFDYFENGGIAAMLAADQRASDELIERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0308197_102246642	3300031093	Soil	LARLALLILPLVTAWFDYFENAGIAAMLAAGPQAGDELIERASFWTRAKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0308199_10615292	3300031094	Soil	LWVTVPGRTATRPLPLLARLALLILPLVTAWFDYFENAGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVILAAIAFVRWRHQRQSQPR
Ga0308199_10690211	3300031094	Soil	LPARLVLLILPLATAWFDYFENGGIAAMLAADQRASDELVERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0308188_10155791	3300031097	Soil	ARLSLLILPLATAWFDYFENEGIAAMLAADQQASDELIERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0308187_101680302	3300031114	Soil	FWVTAPGRTAARPLPLPARLALLMLPLATAWFDYFENEGIAAMLAAGPQAGDELIARTSFWTRAKSLAGLATESMCVILAAIAFVRWRHRRHSQPR
Ga0308187_101698902	3300031114	Soil	VLLILPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVSFAAIAFVRWRHRRQSQPR
Ga0308187_102162492	3300031114	Soil	LATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAALTTELVCVTLAAITFVRWRHRRQSQPR
Ga0308187_104712592	3300031114	Soil	YALSRGLLLLWVTAPGRTAARPLPLPARLALLILPLATAWLDYFENEGIAAMLAADQQASDELIERTSFWTRGKSLAGLATELVCVILAAIAFVRWRHRRQSQPR
Ga0308195_10386441	3300031123	Soil	WFDYFENGGIAAMLAADQRASDELIERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0308182_10103162	3300031125	Soil	LPARLVLLILPLATAWFDYFENGGIAAMLAADQRASDELIERTSFWTRAKSLAALATELVCVMLAAIAFVRWRHRQQSQPR
Ga0308194_100923302	3300031421	Soil	ADVQLQFDTAYPAVYALSRGLLLFWVTAPGRTATRPLPLLARLGLLLLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSLAGLATELVCVSFAAIAFVRWRHRRQSQPR
Ga0308194_101316591	3300031421	Soil	TAPGRTAARPLPLPARLVLLILPLATAWFDYFENGGIAAMLAADQQASDELIERTSFWTRAKSLAGLATELVGVTLAAIAFVRWRHRRQSQP
Ga0308179_10217162	3300031424	Soil	PARLVLLILPLATAWFDYFENGGIAAMLAADQRASDELIERTSFWTRVKSLAALATEFVCVMLAAIAFVRWRHRRQSQPR
Ga0308150_10199392	3300031505	Soil	PARLSLLILPLATAGFDYFENGGIAAMLAADQRASDELIERTSFWTRVKSLAALATEFVCVMLAAIAFVRWRHRRQSQPR
Ga0307470_101750403	3300032174	Hardwood Forest Soil	RGLLLLWLTAPGRTATRPIPLLARLALLTLPLATAWFDFFENEGIAAMLAAGPQAGDEIIERTSFWTRAKSIAGLATELVCVSLAAIAFVRWRHRRQSQPR
Ga0307471_1024088012	3300032180	Hardwood Forest Soil	AYPALYALSRGLLLFWVTAPGRTAERPLPVPARLALLALPLATAWFDFFENEGIAAMLAAGPQASDELIERTSFWTRAKSLAGLATELLCVILAAIAFVRWRHRRRAQSQ
Ga0314781_052034_15_242	3300034660	Soil	LLVLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSFWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR
Ga0370546_044053_462_671	3300034681	Soil	ATAWFDYFENEGIAAMLAADQQASDELIERTSFWTRVKSLAALATEFVCVMLAAIAFVRWRHRRQSQPR
Ga0373950_0089826_444_650	3300034818	Rhizosphere Soil	TAWFDYFENEGIAAMLAAGPQAGDELIERTSLWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR
Ga0373958_0206951_9_308	3300034819	Rhizosphere Soil	LLLFWLTAPGRTAARPLPLPARLALLVLPLATAWFDYFENEGIAAMLAAGPQAGDELIERTSLWTRAKSIAGLATELVCVILAAIAFVRWRHQRQSQPR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F097921

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences