NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002548

3300002548: Polar desert microbial communities from Antarctic Dry Valleys - UQ255



Overview

Basic Information
IMG/M Taxon OID3300002548 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)
Gs0053075 | Gp0060308 | Ga0006266
Sample NamePolar desert microbial communities from Antarctic Dry Valleys - UQ255
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size67279807
Sequencing Scaffolds41
Novel Protein Genes45
Associated Families27

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus tolerans1
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium2
Not Available5
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePolar Desert Microbial Communities From Antarctic Dry Valleys
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert → Polar Desert Microbial Communities From Antarctic Dry Valleys

Alternative Ecosystem Assignments
Environment Ontology (ENVO)polar desert biomedesertice
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationAntarctic Dry Valleys
CoordinatesLat. (o)-78.0486Long. (o)163.8053Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000584Metagenome / Metatranscriptome1007Y
F008258Metagenome / Metatranscriptome336Y
F009385Metagenome / Metatranscriptome318Y
F011711Metagenome / Metatranscriptome288Y
F013996Metagenome / Metatranscriptome266Y
F016802Metagenome / Metatranscriptome244Y
F019957Metagenome / Metatranscriptome226Y
F025631Metagenome / Metatranscriptome200Y
F027713Metagenome / Metatranscriptome193Y
F030320Metagenome / Metatranscriptome185Y
F032127Metagenome180Y
F036799Metagenome / Metatranscriptome169Y
F037001Metagenome168Y
F038495Metagenome165Y
F039575Metagenome / Metatranscriptome163Y
F045722Metagenome / Metatranscriptome152Y
F051753Metagenome / Metatranscriptome143Y
F063248Metagenome129Y
F063575Metagenome / Metatranscriptome129Y
F064235Metagenome / Metatranscriptome129Y
F073514Metagenome / Metatranscriptome120Y
F076687Metagenome117Y
F076730Metagenome117Y
F083539Metagenome112Y
F098376Metagenome103Y
F098387Metagenome / Metatranscriptome103Y
F098418Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI24974J35850_1000002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales20661Open in IMG/M
JGI24974J35850_1000006All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria11280Open in IMG/M
JGI24974J35850_1000123All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5822Open in IMG/M
JGI24974J35850_1000158All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei5437Open in IMG/M
JGI24974J35850_1000284All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter4629Open in IMG/M
JGI24974J35850_1000778All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei3227Open in IMG/M
JGI24974J35850_1000995All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales2948Open in IMG/M
JGI24974J35850_1001186All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Alicyclobacillaceae → Alicyclobacillus → Alicyclobacillus tolerans2763Open in IMG/M
JGI24974J35850_1001557All Organisms → cellular organisms → Bacteria2465Open in IMG/M
JGI24974J35850_1001699All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2381Open in IMG/M
JGI24974J35850_1002022All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium2192Open in IMG/M
JGI24974J35850_1003161All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium1783Open in IMG/M
JGI24974J35850_1003230All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1759Open in IMG/M
JGI24974J35850_1003560All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1662Open in IMG/M
JGI24974J35850_1003907All Organisms → cellular organisms → Bacteria1579Open in IMG/M
JGI24974J35850_1005377All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1319Open in IMG/M
JGI24974J35850_1005565All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales1293Open in IMG/M
JGI24974J35850_1005712Not Available1274Open in IMG/M
JGI24974J35850_1006182All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1220Open in IMG/M
JGI24974J35850_1007797All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium1057Open in IMG/M
JGI24974J35850_1007866Not Available1051Open in IMG/M
JGI24974J35850_1007984All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei1042Open in IMG/M
JGI24974J35850_1008047Not Available1036Open in IMG/M
JGI24974J35850_1009137All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia955Open in IMG/M
JGI24974J35850_1009740All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria917Open in IMG/M
JGI24974J35850_1009968All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae903Open in IMG/M
JGI24974J35850_1010038All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria898Open in IMG/M
JGI24974J35850_1010735All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium862Open in IMG/M
JGI24974J35850_1011378All Organisms → cellular organisms → Bacteria828Open in IMG/M
JGI24974J35850_1011996All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium801Open in IMG/M
JGI24974J35850_1012297Not Available786Open in IMG/M
JGI24974J35850_1014803All Organisms → cellular organisms → Bacteria698Open in IMG/M
JGI24974J35850_1015752All Organisms → cellular organisms → Bacteria672Open in IMG/M
JGI24974J35850_1015990All Organisms → cellular organisms → Bacteria667Open in IMG/M
JGI24974J35850_1017316All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → environmental samples → uncultured Solirubrobacteraceae bacterium636Open in IMG/M
JGI24974J35850_1020503Not Available577Open in IMG/M
JGI24974J35850_1020595All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium575Open in IMG/M
JGI24974J35850_1021609All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia561Open in IMG/M
JGI24974J35850_1021778All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium558Open in IMG/M
JGI24974J35850_1022658All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium547Open in IMG/M
JGI24974J35850_1023438All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium537Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI24974J35850_1000002JGI24974J35850_100000226F013996VSRELLILVSYVEAALLVVILSIGLNQVRRRLVIISDGLKELAGMLATVESQHLRGLMGWVADINGPLSVIAGVLPGIAAKAALVVRKATGG*
JGI24974J35850_1000002JGI24974J35850_10000024F008258VTQDPIESALEKLGSYGVPVNEIGERVGGLVGQLGALDPLEVMEQLGSIDPSQLDVGAMLGEAKEKFDALDPTMRVPLMIVAGFVGARVVRWIVR*
JGI24974J35850_1000006JGI24974J35850_100000615F030320VESFALSERWNGWTDLVVMVDAAHAAVGAGPLDPLVCEVTLDWDDHETTIDSLTELQAILRSGAVPDSLEISVAHVVESEASLTLVYNGRWLQINGAGSDWERASNAYGAAQVEIALVAGITTFRLPSLPRDTVAETRKRLSETQD*
JGI24974J35850_1000123JGI24974J35850_10001234F019957MEEVPHMSVTLTVVAASANQNAWSATLVVGLIVLLVVIALLEMLRRTVLKLEGNLWRTWVTGKAVVKNTATTFQLKNTRNSGEELVEELRNHG*
JGI24974J35850_1000123JGI24974J35850_10001236F025631VTLALSMWWTVGWVIGTIVVLLVAVLLLAITGLAKKIDGVAQELVTDLDSIATKTGPLQNVAATNTAVKTITRGLRAARGGDPALNKYRTSPGWRD*
JGI24974J35850_1000158JGI24974J35850_10001586F027713MDRFELSERWCGWKDVDVIFIAAHAAIEAGPFDPPICEVVFDEEFDPFTVDTFEEAREHLSRKRVLSMDVIVSHLDEDEARVTLHYSGDRLQLNGSGSDWTRARAAYDAAQAELAGHFGITTFKLPKLPRDSVAETRKRLVIEELEAALENVDWNIEDR*
JGI24974J35850_1000284JGI24974J35850_10002843F051753VAGSNQAQPTPDPLAFVGVTDSVTDNGGGEQLELTLGPLYLVVVDDRVSAPLSGRAERFYRSPAQTLEAARCLAALLLDRGDELAGDGPWRRPLPGGQRHVCIVRAPVGPID*
JGI24974J35850_1000778JGI24974J35850_10007784F038495VPIDQERRLAQAAATAHAAQDRGDDFAASDAWRRYVLIEDALRDPQDLLDEGVALSKLAIDLWLQR*
JGI24974J35850_1000995JGI24974J35850_10009955F008258VTQDPIEQALDKLGTYGLPVEEIGAKAGALFGSLPSFDLFEIVDQVGAIDPTEIDFGEILGEVKARFDELDPALKVPVAVAAGFVGARVVRWIVR*
JGI24974J35850_1001186JGI24974J35850_10011862F063575VRGLESTPRQLALPVGGRDRTDRMWESFSPAAQEQVLRLLAGAIARILEQRERER*
JGI24974J35850_1001557JGI24974J35850_10015573F039575MSDDPIRTLLCSLTPAPFIWSPNGTVVIMDNHVQEAGGDSDAVGEWVEARGGMIDRTLPVVATRRGVTAIPKPVGKRYYVVPETALGD*
JGI24974J35850_1001699JGI24974J35850_10016994F039575MSDDDEIRKLLSDLPTAPFIWSPPGTVIIMEEKVVEAEGDTDAVAAWVEAHGGDLDRTLPVVATRRGVTAIPKPKGKRYYVVPEKELIRSDAA*
JGI24974J35850_1002022JGI24974J35850_10020224F051753MASAEDEHAGGEQLELTLGPLYVVTVDDRVSGPLTGRPARRYRSPPQALEDARCLALLLLDRSEDLAGDGPWRRPLPGGQRHVSIVVAPAGSIG*
JGI24974J35850_1003161JGI24974J35850_10031612F038495AAAAHAAQERGEHWAASDACGGYALIEAALRDPQDPLDEGVSRSQVAIDLWLQR*
JGI24974J35850_1003230JGI24974J35850_10032303F063248VPTRRGSLSSRAVAKKKQEKDPIRKLLTGVQPSLFMGNPTGTVAIMEAKVVAAGGDPEAVLAWVREHGGYPDKSFPIQKRNHLSPKQPESSKVFYVIPEDELK*
JGI24974J35850_1003230JGI24974J35850_10032304F039575MSDEKIRKLLAGITPTPFIWVPAGNLVILVTNVEEAGGDPAEVQAWVEAQGGYEDRTLPVVSTRRGVTSVPKPVGKRYYVVPEKALAA*
JGI24974J35850_1003560JGI24974J35850_10035604F032127MTLDEALLMLNDRLGHEVTAWVEVAHEMPLLITSGHLENWHLDVVDEAPAAGDSHFDLYGHYSLGDTRFDLSDAPVESVTERENGLTFRLQGGARLVVTWQPMLEPGTSSEGARAS
JGI24974J35850_1003907JGI24974J35850_10039072F098376MAGIRTLATAILQKTNCQNKKAQLENFSDDFDNLIITLKTMNFL*
JGI24974J35850_1005377JGI24974J35850_10053773F032127MAMSLDEALLTLNDRLGQEVTAWVEVKHETPLLITTGLLENWSHETSSSGTLEPTAAQHFDLRGHYSIADSRFDLSDAPVEMVSERTDGLTFRLEGGARLVVTWPPKAEGDLV*
JGI24974J35850_1005565JGI24974J35850_10055651F038495MQQAAAQAHSAQDRGDHAAANEAWRRYVLIEDALRDPQDLLDEGVALSKVAIDLWLQR*
JGI24974J35850_1005712JGI24974J35850_10057123F019957MTDVTVLALSSNQSAWVYTLIVGFVVLLVVIALLEGLRRTVKQLEGNLWTTWVTGKAVVRHTGTTYQLKNTRDSGDELVEELGHHG*
JGI24974J35850_1006182JGI24974J35850_10061822F098387MTSVRETYDLPKRPPVPFRQYALMLVFPIASLALWFALPDSPITVALLAIAVLVTVFVGVGMIVRSRGLDEKPGREPVTTPSSENG*
JGI24974J35850_1007797JGI24974J35850_10077971F027713AMDRFELSERWCGWKDLDVIFVAARAAMEAGPFDPPICEVVFDEEFDPFTVDTLEEAREHLRRHRVLSMDIILSHWDEDEARLTLRYSCDRLQLNGYGXDWERARAAYDAAQAELAGHFGITTFKLPKLPRDTVAETRKRLVIXELEAALENVDSGLDDR*
JGI24974J35850_1007866JGI24974J35850_10078662F063248PGALRVAAVGPLSSRAVSKKAKDPIKALLAGIQPALFLGNPSGTVAIMQDKVVDAGGDPEAVLAWVREHGGFPDKSFGVRARQGFDMRPKAASKHYYVVPEDELK*
JGI24974J35850_1007984JGI24974J35850_10079841F098418MRVRAMPWLMVLELAVTLRKHWKRLDPAERQLLSELVVKSQGRPNRLTTAERAHVRRLVAKLEPGQIARSVVPIGRRAAKGRRGR*
JGI24974J35850_1008047JGI24974J35850_10080472F016802MRRHRLQAQARLEDGMSEGRIDGSALQLVTVCLSDEGAGEVSDEQGRPVAPAPPVVSHLRPSEARELAFCLLELAELCERRSEGWQ*
JGI24974J35850_1008047JGI24974J35850_10080473F064235SVSSWPSAMIAVRRSIVQLRLDLAESPVPAVALWELVGEQQRQGAMSLLAALIAQTVAPEAVGDEAASLAGAGASGGRHE*
JGI24974J35850_1009137JGI24974J35850_10091372F037001VTAKQRVVLGALRDAQHAHDGQAVSAGQIAGVCPAPWWGRPDLVTQALVLLERHGLVLVAAGSTRAWKITAAGRLMLA
JGI24974J35850_1009740JGI24974J35850_10097402F037001VTAKQRVVLGALRDAQHEHDGEAVGAYQIAAACPAPWQGRPDLVTQALVLLERDGLVLVAAGSTRAWKITAAGRLMLAPRRGPARERPVIGGGPHPR*
JGI24974J35850_1009968JGI24974J35850_10099682F076687VNRTSIKIIKRKDAEAMANDKTQDLPKLKVAAAMSGKRIERRLHRKMADTVSNWIAERKENNRTKEISAIRKLFGDESLLSRTA*
JGI24974J35850_1010038JGI24974J35850_10100382F083539MRSPYRHLIRRPRPPHVALAAWIVTGPLGHLYAGVVDWVVLIVRYARARARGERL*
JGI24974J35850_1010735JGI24974J35850_10107351F009385MFILKAKTQLKKAIEKAKKIRPRVEFDAFGRYRVSGSKGGFYTVICKKSDNGYKTIECTCKAGDRGLVCFHSVAALSLHIGIARQKQTA*
JGI24974J35850_1011378JGI24974J35850_10113781F036799VASQKRSISFEESVLAEAEQRASAAGGNLSAFVNAAVARELRIARGMEMLADDDEQFGPVPGEVRAQIAEQWPA*
JGI24974J35850_1011996JGI24974J35850_10119961F000584MARKTHHKHSSTKGYRRLLDGLADLEGVHSVATGRVKPRMGSGRPVAPISKVRTTESGLSITINADGAIVDAYVVTDRPAEVAAAIAERGWSASS*
JGI24974J35850_1012297JGI24974J35850_10122972F016802MSWHRWETRARVEDGMTEGLVGGGALQLITVCLCDDGVSEISDPLGRPVAPAPPVLSHLRPSEARALAFELLELAELAERRSEAQE*
JGI24974J35850_1014803JGI24974J35850_10148033F073514MRVARSRSRELVAQGRPAAVVARVAGISRQAIYRRPKRPADGAA
JGI24974J35850_1015752JGI24974J35850_10157521F045722VTPARAPRYRVCVYELRDGKTTQVIDTYGSGFITAVATLDDDIIEVHFASGGPRRLQQDIAAAI
JGI24974J35850_1015990JGI24974J35850_10159902F019957MNALPTVIALSXNQSAWVITLAVGFVVLLVVIALLEGLRRAVVALNDDIWSTWVNGKAVVKNTAMTYLLKNTRQSSDELVDELSNHG*
JGI24974J35850_1017316JGI24974J35850_10173162F076730PADDDFARVDLRLFALTEGGKQIDDPQPASLSVRCARDKLAALELSVLMSMRLSRPPTGVRLDAWQRICAALAERGIDTDPATLHALKFSLTPDSELRAAQQAVWPS*
JGI24974J35850_1020503JGI24974J35850_10205032F011711MRDKRQKNQLVLAFPEEARSEAPNSPSEGIESPIAEHPAESPTTSEKMMEE
JGI24974J35850_1020595JGI24974J35850_10205952F076687VNKKSIKIIKRKDAETMVHDKTQNLSEPKLVVTMSGEKIERHLHRKMADTVSNWISERRENNRVEEISAIRRMLGSESFLNKTV*
JGI24974J35850_1021609JGI24974J35850_10216092F038495VAIDQQRRLQTAAAQAHSAQDQGDFAAANDAWRRYVLIEDALRDPQDLLDEGVELSKVAIDLWLQR*
JGI24974J35850_1021778JGI24974J35850_10217781F027713VSATAWSTYSLAMDRFELSERWCSWKDLDAIFAAARVAIEAGPFDPVICEVVFNEEYDPFTVDTLEEAREHLLRNPRIMSMDIVVSHIDADDACLTLSYSGERLQLNGYGRDWTRARAAYDAAQAELAGRYGITTFKLPQLPKDTVAETR
JGI24974J35850_1022658JGI24974J35850_10226582F037001VTAKQRVVLGALRDAQHEHDGEDVSAYQIGAACPAPWQGRPDLVTQALVLLERDGLVLVAAGSTRAWKITAAGRLMLAPRRGPARERPVI
JGI24974J35850_1023438JGI24974J35850_10234381F098376MAEVRTLTTIILSKTNCQNKKAQLENFSDDFDSLIITLKMLNFL*

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