Sample 3300004762

3300004762: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300004762 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0110155 \| Gp0085343 \| Ga0007749
Sample Name	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	63413786
Sequencing Scaffolds	60
Novel Protein Genes	78
Associated Families	56

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2
Not Available	13
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae	1
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	2
All Organisms → cellular organisms → Eukaryota → Sar	8
All Organisms → cellular organisms → Eukaryota	4
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Brassicales → Brassicaceae → Camelineae → Arabidopsis → Arabidopsis thaliana	1
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella fidelis	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	3
All Organisms → cellular organisms → Eukaryota → Haptista → Centroplasthelida → Panacanthocystida → Acanthocystida → Marophrys → unclassified Marophrys → Marophrys sp. SRT127	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater lake biome → freshwater lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	Lake Michigan, USA
Coordinates	Lat. (^o)	43.1998	Long. (^o)	-86.5698	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000155	Metagenome / Metatranscriptome	1877	Y
F000191	Metagenome / Metatranscriptome	1666	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F000948	Metagenome / Metatranscriptome	823	Y
F000991	Metagenome / Metatranscriptome	811	Y
F001145	Metagenome / Metatranscriptome	765	Y
F001219	Metagenome / Metatranscriptome	744	Y
F001583	Metagenome / Metatranscriptome	668	Y
F002730	Metagenome / Metatranscriptome	534	Y
F003081	Metagenome / Metatranscriptome	508	Y
F007472	Metagenome / Metatranscriptome	350	N
F007746	Metagenome / Metatranscriptome	345	Y
F009426	Metagenome / Metatranscriptome	318	Y
F009964	Metatranscriptome	310	Y
F012124	Metagenome / Metatranscriptome	283	Y
F014475	Metagenome / Metatranscriptome	262	Y
F016362	Metagenome / Metatranscriptome	247	Y
F018867	Metagenome / Metatranscriptome	232	N
F023359	Metagenome / Metatranscriptome	210	N
F023855	Metagenome / Metatranscriptome	208	Y
F028436	Metagenome / Metatranscriptome	191	Y
F030342	Metagenome / Metatranscriptome	185	Y
F032541	Metagenome / Metatranscriptome	179	Y
F034583	Metagenome / Metatranscriptome	174	N
F041009	Metagenome / Metatranscriptome	160	Y
F043736	Metagenome / Metatranscriptome	155	Y
F043769	Metagenome / Metatranscriptome	155	Y
F046205	Metagenome / Metatranscriptome	151	Y
F053778	Metagenome / Metatranscriptome	140	Y
F061523	Metagenome / Metatranscriptome	131	Y
F061656	Metagenome / Metatranscriptome	131	Y
F062806	Metagenome / Metatranscriptome	130	N
F063303	Metagenome / Metatranscriptome	129	Y
F063743	Metagenome / Metatranscriptome	129	Y
F064750	Metatranscriptome	128	Y
F065719	Metagenome / Metatranscriptome	127	N
F068863	Metagenome / Metatranscriptome	124	Y
F073598	Metagenome / Metatranscriptome	120	N
F079587	Metagenome / Metatranscriptome	115	N
F079656	Metagenome / Metatranscriptome	115	N
F080073	Metagenome / Metatranscriptome	115	Y
F081324	Metagenome / Metatranscriptome	114	N
F081387	Metagenome / Metatranscriptome	114	Y
F084268	Metagenome / Metatranscriptome	112	Y
F085112	Metagenome / Metatranscriptome	111	N
F085156	Metagenome / Metatranscriptome	111	N
F085745	Metatranscriptome	111	Y
F086559	Metagenome / Metatranscriptome	110	Y
F088946	Metagenome / Metatranscriptome	109	N
F089934	Metagenome / Metatranscriptome	108	Y
F093418	Metagenome / Metatranscriptome	106	Y
F097448	Metatranscriptome	104	Y
F100446	Metagenome / Metatranscriptome	102	N
F101259	Metagenome / Metatranscriptome	102	N
F102720	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0007749_1000775	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2161	Open in IMG/M
Ga0007749_1000993	Not Available	549	Open in IMG/M
Ga0007749_1001057	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	965	Open in IMG/M
Ga0007749_1002249	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	536	Open in IMG/M
Ga0007749_1003083	Not Available	664	Open in IMG/M
Ga0007749_1004206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Aphanothecaceae	4801	Open in IMG/M
Ga0007749_1004964	Not Available	625	Open in IMG/M
Ga0007749_1006361	Not Available	942	Open in IMG/M
Ga0007749_1008227	All Organisms → cellular organisms → Bacteria	2229	Open in IMG/M
Ga0007749_1008799	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	560	Open in IMG/M
Ga0007749_1009837	All Organisms → cellular organisms → Eukaryota → Sar	2258	Open in IMG/M
Ga0007749_1011174	Not Available	1538	Open in IMG/M
Ga0007749_1012127	All Organisms → cellular organisms → Eukaryota	1966	Open in IMG/M
Ga0007749_1015303	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	686	Open in IMG/M
Ga0007749_1016191	Not Available	2004	Open in IMG/M
Ga0007749_1016789	All Organisms → cellular organisms → Bacteria → Proteobacteria	1838	Open in IMG/M
Ga0007749_1017072	Not Available	705	Open in IMG/M
Ga0007749_1018053	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → malvids → Brassicales → Brassicaceae → Camelineae → Arabidopsis → Arabidopsis thaliana	1014	Open in IMG/M
Ga0007749_1140527	Not Available	505	Open in IMG/M
Ga0007749_1144767	All Organisms → cellular organisms → Eukaryota → Sar	590	Open in IMG/M
Ga0007749_1144933	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	542	Open in IMG/M
Ga0007749_1145018	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	600	Open in IMG/M
Ga0007749_1146017	All Organisms → cellular organisms → Eukaryota → Sar	623	Open in IMG/M
Ga0007749_1154012	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	504	Open in IMG/M
Ga0007749_1162802	Not Available	531	Open in IMG/M
Ga0007749_1162939	Not Available	586	Open in IMG/M
Ga0007749_1164224	All Organisms → cellular organisms → Eukaryota	590	Open in IMG/M
Ga0007749_1167743	Not Available	668	Open in IMG/M
Ga0007749_1169145	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea	603	Open in IMG/M
Ga0007749_1172886	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	569	Open in IMG/M
Ga0007749_1174447	All Organisms → cellular organisms → Eukaryota → Sar	508	Open in IMG/M
Ga0007749_1178743	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	573	Open in IMG/M
Ga0007749_1182786	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	734	Open in IMG/M
Ga0007749_1186417	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	596	Open in IMG/M
Ga0007749_1186517	All Organisms → cellular organisms → Eukaryota → Sar	543	Open in IMG/M
Ga0007749_1186590	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	740	Open in IMG/M
Ga0007749_1187093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Shewanellaceae → Shewanella → Shewanella fidelis	692	Open in IMG/M
Ga0007749_1189379	Not Available	659	Open in IMG/M
Ga0007749_1190100	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Perkinsozoa → Perkinsea → Perkinsida → Perkinsidae → Perkinsus → unclassified Perkinsus → Perkinsus sp. BL_2016	520	Open in IMG/M
Ga0007749_1190521	All Organisms → cellular organisms → Eukaryota → Sar	1175	Open in IMG/M
Ga0007749_1191797	All Organisms → cellular organisms → Eukaryota → Sar	593	Open in IMG/M
Ga0007749_1193730	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	511	Open in IMG/M
Ga0007749_1193733	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	609	Open in IMG/M
Ga0007749_1194640	All Organisms → cellular organisms → Eukaryota → Sar	588	Open in IMG/M
Ga0007749_1194839	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	543	Open in IMG/M
Ga0007749_1196563	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	761	Open in IMG/M
Ga0007749_1197066	All Organisms → cellular organisms → Eukaryota	601	Open in IMG/M
Ga0007749_1197417	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	524	Open in IMG/M
Ga0007749_1198454	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	971	Open in IMG/M
Ga0007749_1200263	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	978	Open in IMG/M
Ga0007749_1200983	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
Ga0007749_1202897	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
Ga0007749_1203395	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Chrysophyceae → Chromulinales → Chromulinaceae → Ochromonas → unclassified Ochromonas → Ochromonas sp. CCMP1393	673	Open in IMG/M
Ga0007749_1203951	Not Available	747	Open in IMG/M
Ga0007749_1204811	All Organisms → cellular organisms → Eukaryota → Haptista → Centroplasthelida → Panacanthocystida → Acanthocystida → Marophrys → unclassified Marophrys → Marophrys sp. SRT127	553	Open in IMG/M
Ga0007749_1204928	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1498	Open in IMG/M
Ga0007749_1206165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3636	Open in IMG/M
Ga0007749_1206544	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	520	Open in IMG/M
Ga0007749_1207136	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
Ga0007749_1207766	All Organisms → cellular organisms → Eukaryota	780	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0007749_1000775	Ga0007749_10007751	F001219	MNFPITFVLNAGGLFDFDLTFVAEASLFLFLALIVTFVFVSPIAKQLDERAEFINYTLRKATILLTFGYEKLVGCVGLLTEEIGEMNRQIKLTKNYTNSNFENEVASVQKENLKLLSKLKGDLSIKSAYIFSNITNDLVSLTDKFFVKKFQSVS*
Ga0007749_1000775	Ga0007749_10007752	F001145	MTWNYFSFFLNSEETEAFLQLNTNFLETNVANIAILVGLLVYGNKVSFSPSLENRQKEIIQTIENAQKDVVNASNYYYLAEKGFTQSLFWLQAWKGLYEKDKVEIVNQKYKQVKSGLSETFATTESLIKNFENKSFLSLQRYIIFVTASRILRKFLFLSETEQSKLIEVTISKLGGFKKALLKK
Ga0007749_1000993	Ga0007749_10009931	F007746	GEKQINRFPRRVRIHGGEFGESARAIHRNELEKSGSSRTKEIPWFD*
Ga0007749_1001057	Ga0007749_10010572	F079656	VDYHRMAQTDVPTAFSYDASLTGIDTTGNANNAVYYLNGNVVLYADSVSSNPAGDNYLFTVKGANFQNLLTAIGGTTSVEAQLWLENNSLNLSSVTHNYTVVDDNTITFTIGYSDIDALTDCTSGVVRPTLALGTATGGFHMTGLHFFLDIVEP*
Ga0007749_1002249	Ga0007749_10022491	F018867	KKDSDGAFALLGNNVTFGALKNLITDKPSPITVKLADKKDSDGAFALLGNNVTFGALKNLITDKPSPITVKLADKKDSDGAFALLGNNVTFGALKNLITDKPSPITVKLADKKDSDGAFALLGNNVTFGALKNLITDKPSPITVKLA*
Ga0007749_1002731	Ga0007749_10027312	F000191	AASGYTVGNLVNQHVRFIETGEKDPLMTYEKALFTQSRAGEIPPID*
Ga0007749_1003083	Ga0007749_10030831	F023855	VTQYDGNLKTERYGEVRVVSLSSLIELYQEFSFEGVQKYGNRDVTESSLVSSCSKDNLAGRRATTFQIRNQ*
Ga0007749_1004206	Ga0007749_10042064	F001219	MNFPITFLLNAGGLFDFDLTFLAEASLFLFLAAIVTFVFISPISKQLDERAEFINYTLRKATILLTFGYEKLVGCVGLLTEEIGEMNRQIKLTRNYTNSNFEDEVALVQKENLKLLSKLKGDLSIKSAYIFSNITTDLISLTDKFFAKKFQSVS*
Ga0007749_1004206	Ga0007749_10042065	F001145	MAWNYFSFFLNSEETEAFLQLNTNFLETNVANISILIGLLVYGNKVSFSPGLENRQKEIIQTIENAQKDVVNASNYYYLAEKGFTQSLFWLQAWKGLYEKDKLEIVNQKYKQVKGALTETFSTTESLIKNFENKSFIALQRYIIFITASRILRKFLFLSETEQSKLIEVTISKLGGFKKVLLKK
Ga0007749_1004279	Ga0007749_10042791	F043769	SVITVAGKGSLNNGWTYSAYQNIDSDEVNNGREIANASPMTTRAIVLSPNANFSLFYTYDGVYGGEIARTAVPTLGERVVDLTGATTLAEFIDVTSGTHAIGFDVLNVGPAGRLSVAYAPNLDATQSQSSDRLYSGTAQAGINSASGYSIGYSVTPGPIKIAAGYTKIDAKQIATAVDPVSKTLGITYTAADYAIGAQRTKN
Ga0007749_1004964	Ga0007749_10049641	F023855	VIQYDGNLKTERYGEVRVVSLSSFIRLYQGFSTEGVQKYGGRDVTESSLVSSRSKDGLAGRRTATFQIRKLNFVNSGLTT*
Ga0007749_1005482	Ga0007749_10054822	F000191	SGYTVGNLVNQHVRFIETGEKDPLMTYEKALITQSRPGEIPSID*
Ga0007749_1006361	Ga0007749_10063612	F081387	MGAEKHPTVGSSGEYWSISKSLNQRFAEMIDFIKSEGYGSCKVCAQTKKLTLCLKRIPGQQRASSCGKTLTGERYWPSLGVKNG*
Ga0007749_1008227	Ga0007749_10082271	F088946	MGVKKSKGDFFSKRRSTKESFYPKFFVKKFLQWPLKQGKKFINVKKLLEFNQKLIYTSKSCRRLDLLFVVLIYTSLFKFRSTNLTFIKQRLTKTKKKKVYENVPYNHLEKNSIKQFSSIFNKELLKKKFVFFFLIQKYLRKKLIRNYRKKCYLSLMSVS*
Ga0007749_1008799	Ga0007749_10087991	F001583	MVLHYFTPYYLYLVKLHVMFCHESDSDSGENVYEDKSGSYVSFYDAFLKEIQDAYTLYVFLYFFIHHFDGGPVNYYFFERNISELDEIRFYGVAPHYFRPLMGLLVVSPSHYEGLMMGL*FVLLASLPIIYNLYNSNNSYLPIIPMQSSMLQTIFFILFMLSMYCTASMLPCGRYYYA
Ga0007749_1009837	Ga0007749_10098371	F001145	MISNFVSFLLNHEESFIELNPNILETNVINIAILVGLLVYGNKVSFSVGLENRQKEIIQTIENAQKDVVNASNYYVLAEKGFTQSLFWLQSWKILYEKDKMEVVNTKYNLVKTGLTETFVTTENLVKNFENKSFVALQKYIIFITASKILRKFLFLSEKEQSKLIETKIS
Ga0007749_1011174	Ga0007749_10111742	F081387	MGAEKHPTVGSSGEYWSINESLNQRFAGMSDSLNREGYDSCKVRARVIKMILHLKRTPGQQRASSCGKTLTGERYWPLLGVKSG*
Ga0007749_1011484	Ga0007749_10114842	F000191	YTVGNLVNQHVRFIETGEKDPLMTYEKALITQSRAGEIPPLD*
Ga0007749_1011741	Ga0007749_10117411	F000075	MVPALLATANANMYEAMNEDELLVNLESTLNSALTSESRGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQK
Ga0007749_1012127	Ga0007749_10121274	F089934	MQEAQCQQRVCPLCAYTGGEHEVFDEIMCYMADNAHRVHLNQLAMHVRDALRHNLEVDMTWLQVREHFLSHQCDQRVVLNHVLRDLVDIIAVAKSNCVVISEEGMQSMDAKNTGVYIDAVKQLMCIYKQLDNTGRAKGTI*
Ga0007749_1012532	Ga0007749_10125322	F000191	FLAASGYTVGNLVNQHVRFIETGEKDPLMTYEKALITQSRGREIPELD*
Ga0007749_1015303	Ga0007749_10153031	F063303	YDPNMPQEKIAGGESMFKNKDERFKKSMELEYAAHVGPGSYSQAEGTVELAFKKQSGKVSSAFASTSLRGDSFIPS*
Ga0007749_1016191	Ga0007749_10161911	F007746	ASCAGEKQINRFPRRVRIHGGEFGESARAIHRTESEKSGSSRIKEIPWFD*
Ga0007749_1016789	Ga0007749_10167893	F084268	MLFLLATPEYNNSQSNTTKVKVHLRSGVAEILENHQDLMGKVENNIVEIESNFENKIEKSLFVLQDAVFVVSNQGLDKTADSKGTGVYIYAKRATEINSTLSIDDISKQFELKTQQLETE
Ga0007749_1017072	Ga0007749_10170722	F009426	LRSSRVEKSAAMTMKVNKDIKLLLDMIIGETSYLIIFFMTTSPCVISAGAARETLFEGKADYCMNVCE*
Ga0007749_1018053	Ga0007749_10180532	F073598	MGTGGYILYQTQGNSENIKLAIKESVPGCKGPGTKGKQPRSIIKVLKKKLSEKKAYLIVTAKRWAWKQPSLRESVIAHWSN*
Ga0007749_1020746	Ga0007749_10207461	F097448	LDTECQQKQASFEEKQQLRADEIAAIAKATEILSDGRVAAGGQHIEAVQTSLVQTGSKDTFLGQTEGIHRRLREFLASEASRLHSKTLGLLSEKVAADPFAKVKKLIDDMITRLLEEANADAEKEGWCDTEMGKSKVTRNKLSEEIDGLSAAIEDGKGTIMKLTQELADLADEIKELDVQMGES
Ga0007749_1077019	Ga0007749_10770191	F079587	SQSTMLSTFALATMIPTAFISIDTSPFFYNDLMAVQAMMRPPPSSSWRCTDEECMMSYPVSHLEDASLRLVLGDDGKTITLSGERKIEGCQCQPRDDVIITLPFTPSAPEALSSSIDKGRLTITLSKHAKIPEAKTILIKRQEPKTADASQIRFVPQESASASVVEEKRSEE
Ga0007749_1140527	Ga0007749_11405272	F065719	MSLYIVIAVIIVVSIAFVAVFNRQNKDLKNVRKVSGRGGDFHD*
Ga0007749_1144767	Ga0007749_11447671	F001219	MNFPITFFINANGLFDFDITFPTEALLFLILATVVTFVFLAPVSKQIDERSEFINYTLRKSTILLAFGYEKLSKCVGLLTEEIDEMNRQIKLVKNYTNLKFEDEIIFIQKENLKILSELKGDLAIKSAYVFSNLTSDLTSLADKFFTKKFQS
Ga0007749_1144933	Ga0007749_11449331	F000991	ASTHRLAVSDHSDALGRNVDHYTHKDTKISGYNGADEDEIYDNVFSRFAKEGLTPSGHKTGQKLLMKDDAKLASGQSLEAAHWLSPAEVPSYLDANFENAWNHYDQNGEGWIRYEETHTFFRYLLGKLNRFTGAPGSISDLSSGGKAYKLHYSTTTREKTAVSAV*
Ga0007749_1145018	Ga0007749_11450181	F068863	LNMQYSKLFVLAALLASTSAITVRDHSDPEGGNVDHTTWRDMHKSGYNGADEDEIQDNIYSRYSKEGLTPSGHKTGQKLLMKDDAKIAAGTVLEAAHFLKPSEVPAYLEAHFEDSWNHFD
Ga0007749_1146017	Ga0007749_11460171	F064750	SVFVPLLCVAATADEVNPIEKVIQMMADLETKVIGEGQESQKTYDEFAEWCEDRSKDLQFEIKTGQANKADLEASIQKETANTDALTAKIDDLAADIAEDEAAINTATGIREKENTAWVAEEKELKEVIDMIQRAVAILEKEMGGGASMMQLKNARNLEQALIIMVKASAISTADATKLSALVQTSTTDSDQETGAPEAAVYESKSG
Ga0007749_1153956	Ga0007749_11539561	F086559	MKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ*
Ga0007749_1154012	Ga0007749_11540121	F046205	GKGGAGANNPSEVTDKLQLEQWKSICIDPGPHCEQDLVGIWECYRESDITGDPACKTKYMWRLSMPQIKMAFVDSQPQDSLQAAQSSANDESNVLDFDEFLECLARCGIDKYRAVKEVSPARAVKGFIQNLLNEMSADSVVVEATYIHAERYDAEKETKPLKGESQKD
Ga0007749_1162802	Ga0007749_11628021	F081324	MTTEYRVSATSSANERFKLSQYMFVVLIPALLAIIIFGEVSQAVGPIKNMVAAVAIFGILSIYLIVSGAMREFEALTKDTSAEESAMHVSEVNKKQPWAGYQIYAIVATGLPLILILMAIYG*
Ga0007749_1162939	Ga0007749_11629391	F041009	RAKSTAKNFWMPWFEFVFTSGGKYGQGEKSTNRLAVTKSLPLSSEEYMIRIELSSNKDKGYTITAIKTNKKLYNFKCGATSIALDVPPRSKDLIIGFAGNVQSGADGTYFTNLQALHLKLNAFADEVDAVQVNQ*
Ga0007749_1164224	Ga0007749_11642241	F007472	YSYKVEFSYTRVSSSDTSLASTLYNYTQTNFDMFGQTVNVQTANNNKIVRTTQQTYAQLGATNVNQQFKIQQAFVLIALLTAGLLFVAHTLYFFDGFRNKILFFVGITALRTILIIALLIVVSAEIIAFLAFLGLSDKIASDSPNCLTGPCQKFSDTVTTQLGVNALTIGNEASVLATLQSVATWGPTAGWYLVLA
Ga0007749_1167743	Ga0007749_11677431	F043769	LVRGTTKGFGGETVITVAGKGSLTNGWTYSAYQNFDSDDSLNGRDTAGTTTQIASVMTTRAITISPSKDFNLFYTYDGVFGGEIARTAVPVVTERPVDLTGASGLSEFIDVTSGTHAVGLELLNVGPAGRFSIAYAPNLDAATTSSSDRVYSGTGQTGTVGSTASGYSVGYVVQPGPVRIALGVTKIDQKQSTTAQDADSKTAGIQYIGSGYAVGIQRTKND
Ga0007749_1169145	Ga0007749_11691451	F062806	ISYMQNFNMSFSNNKADVLIHLTQQYWWFFSFLALYYLLVARVFRYRTLKFNPRIASTLRPHGKGDLLTCIIPVTWCLNILINSNFILKLIEWQSESSLFTLRVRAKQWYWVYKLDLRNIADIFSAPRNIGRNKQFSTFGDLQTAEDYLHIMQMRAYSSSKDFSELGKKSLKKKQI*
Ga0007749_1172886	Ga0007749_11728861	F000948	MVEQGSEAELHLNNALSAMDKSQSFDSASKLVAVPIDEKRALTLKVSPTYVLDTVNSVTLKAFRKIVGYDTFESIRRKARDEQKDISDYYNVTVSIMVRRRPADVSPIPKRDPYSPDGPASLASTLDKGFPYDD*
Ga0007749_1174447	Ga0007749_11744471	F085745	PTARSKVASRSMQIGAMKAALLLLATRASATNPLAKVLELMDSCAAKVQRDGDAEAKAYKEYFDWCDDAAKNSQFEIKTATAQVEELNAQIGEFTATISGANSKIEQLTGTIASDEKELAEAQAIRDKEQATFAASEGELTGDIDTLERAVGILEKELAKSPGAFAQVD
Ga0007749_1178743	Ga0007749_11787431	F102720	LKEWFDVHTQSMFLRGEGRKLQYQQWQDLLKKGWGADARAQGYTPGNGVGNWEIFQDSEITGDERCRNKFKISLSLPQAKFAFINSQSLDQLTVGQAKDTDAMTTLEFDEFKECIARCALDKYKPIRQMSAAVMITSFCKNLLGEENTEECMNTATLIKAERYNWKRYSQTLPGQSLKEHKKWLEVWQRLE
Ga0007749_1182786	Ga0007749_11827861	F030342	DATYIHAERYNWKLSKPLPGQSLAAHRKWCDCWQNIEIADLHYFPLWEKGVFDCLQECFQDLTNIFAHYAKSIGGSTTAEDAVEMTMTEFKDLVKDVGLETKDLKFDVMCNMFKKANALNSNAVMQQRKQEAGTSAAKMEGVGSASKAMSQTNKRSKSANKGRDDEMDQELVLYEFVEVLIRIGFWRANPFHGINKLANKLVPLPDCLHQMLHEVVLPNAKRDDSALFKERLAGDKAMLSALAT
Ga0007749_1186417	Ga0007749_11864171	F032541	MSLINEIKEMLSEVTKVNFKGNKFVLKIDVNEDPNKKGIKIQFLPTTFAGMSKQQQDDIAMDLGAKLNQGLAPLGLTVERDRELKDKTIVGFFIYIEYLDKIIINALNQAAKEPDTNN*
Ga0007749_1186417	Ga0007749_11864172	F061656	MPQFCFYSKNNPTQEPVGVVYAGSKEEAVKFFSLSKQLSTNDFLTIFEVKSYTYGAQEGI
Ga0007749_1186517	Ga0007749_11865171	F001219	MNFPVTFLLNAGGLFDFDLTFVAEAGLFIFLALIVTFVFISPISKQLDERAEFINYTLRKATILLTFGYEKLVDCVGLLTEEIGEMNRQIKLTRNYTTSNFETEVSHVQKENLKILSKLKGDLSIKS
Ga0007749_1186590	Ga0007749_11865902	F061523	VIGAGLSVTKFFKDPFEKLAPNTWKAVSESAFWARATVIGAGLSVTKFFKDPLEKLAPNT
Ga0007749_1187093	Ga0007749_11870931	F101259	YEIFMGDIGIVTDVRFYGVAPHWYFRPFMALIACPYHKTGVFGLLLLFFLLFFQPTIHGTNEQNNYLKRSVLFLRHKLKRSNTYVSSYFILEANLYHQFTYALFVMCCFYGSSFLPYGRFYNRLGGNWGLFGADCFILCYLAFPALRRPLLLEYFLYYIFIKTNQITNHKLNKNVLLQSI*
Ga0007749_1189379	Ga0007749_11893791	F016362	VNAATGAMTPTDSSRCTRDEVYTVTDTSLQPVPPSFQPQQPLTSAGIPITIQGQTTFEAGQPIVTPQQPLQIQLPPTTAFRQVAVQQQLPQQVIVQQAVTTPVPVSNTGAASTNMGIDITNMNFAINPVAMQPLVTPAPSQLFTTEAYTVPGGVSFQPQPPITTAGAMITRVGAAQVLPGTPIITARDALTIPQQPIAVQVPRQATRQVPACQTITEPC
Ga0007749_1190100	Ga0007749_11901001	F023359	TLRQSIVESYSTYDSNSGGMVKGYFKTSQAFVVIVLVVSFVLTVLLTLFQLDRVRNWFIFSIGMSFTRIAITLLAALVVLSSVIAFLSFLGLPQAFKDEIPNCVDGPCREFSNSIKLSDLLEVQGANTYSLVNTRTWGPVEGWFIVLGIIPVSVVLLALIVLNKFPLPIDSE
Ga0007749_1190521	Ga0007749_11905212	F001145	IFVSLLLNNHEEAFLELNPNLLETNVFNILLLLGLLIYGYKTSFSVGLETRQKQIIQTIENAQKDVLNATNYYYFAEKGFTQSLFWLQSWKSLYEKEKIEIVEKKYNQVKSGFLEAFATTENLVENYEKKAFLSLQRYILFLTASRILRKFLFLSESEQSKLIEVTISKLGGLKK*
Ga0007749_1191797	Ga0007749_11917971	F001219	MNFPVTFFINASGLFDFDLTFPTEALLFLILAGVTTFVFLTPVGKQMEERSEFINYTLRKSTILLTFGYEKLTSCVGLLTEEIDEMNRQVKLVRSYTNSKFEEEITFVQTENMKILSELKGDLAIKSAYIFSNIAPDLELLTKKFFIKRFQAF
Ga0007749_1193066	Ga0007749_11930661	F093418	KWLEVWQRLEISDMYYFPLWEKGVHDILQKHFAELTLIFLAYCRSLLGSGSAEDAMEMEMAEFHDFIDECGLETKQVNFDLMTNNFIKANATNSGAVRDQHAESRRSSATKQDGRTTEVVAKVKGTNDGQEAKKDQELVLYEFIGLLVRIAFQRANPTFGNYGNKKAVVHLCNYPGSGMHDNGCLQTMIEDEILPRARKDTSAVFRETVMTELSVLKVLDEYRPKLKTWYNEATSDDSKQTDITDKLGMEQWMRVCDEKDLVGIWQCYRESDI
Ga0007749_1193730	Ga0007749_11937301	F012124	MQFVLATPEYNNSQSNTTKVRVHLRNGIAEIFDQHQDLMGKIDNNIIEVETNFENRIEKILFVLQDGVFIVSNQGLEANAETKGTSIYVYAKRVREINSTVSLEEISKQYEQKKLDFETETQKLTGNAATDKVINS
Ga0007749_1193733	Ga0007749_11937331	F063743	DMYYFPLWEKGVHDLLQKHFSELSLIFLAYCRSLLGSDSAEDAMEMEMAEFHDFVSECGLETKLITFDLMSNMFIKANATNSAQVRDQHAESRRSSETKLDHLQKGDQRMTTGRTTEEKGKVKSKSDGTEAKKDAELVLYEFINMLVRIGFQRANPTFGNFGDKKPIKHLPGCLRAMIEDEILPARARTRRPSSARR*
Ga0007749_1194640	Ga0007749_11946401	F009964	DNQLLDIDRDDLTAFLSGGQTGASDAIIGILKQMGDTMTATLGEVTTTENDALKSYAQLMAAKTAEVDALTASIEDKTKRIGDLGVAIVGLKQDLTDAEGSLLEDKKFLAELEKGCGTKEAEWAEICRLRSEELLALADTIKILNDDDALELFKKTLPSSASFMQIEVTAAAMKSRALEVLQHAKAGRKGDRQRL
Ga0007749_1194839	Ga0007749_11948391	F053778	NIKMRLSIPTCKAAFMDSQSAEQLGVAQADATSEQSVLDFDEWLECLARIANAKYQSIKQMDPAAKVKAFLQNFFGEKSEEDCMRTSTYIRAVRYDLGDSVPLKDESPEEHAAFLAEFKQLDLSGLYGFPLWEAEVHDLLHANFRELASIFRGYCKSLGEGSSDESAKTMDLEEFHDFVI
Ga0007749_1196563	Ga0007749_11965631	F061523	VSESAFWARATVIGAGLSVTKFFIDPLEKFAPKTENVSESAFYARATVIGAGLSVTKFFKDPLEKFA
Ga0007749_1196563	Ga0007749_11965632	F061523	VSESAFYARATVIGAGLSVTKFFKDPLEKLAPNTWKAVSESAFWARATVIGAGLSVTKFFKDPLEKFAPNT*
Ga0007749_1197066	Ga0007749_11970661	F080073	MTPDVMLSVLQSVNLLNATLLAKNPKTPSVMSNVKDLIAKSCAPKKLVKWKTAPNVLPFVNPPTVLPIAKSPNQNVKPFVKNPNVTGNATNPNALNLNVNLFVKIPLADLKSNAVNVMPMVPLLKELCSSKKLKETLLAANATNPTYSKSQSPELILHLINK
Ga0007749_1197417	Ga0007749_11974171	F084268	MQFVLATPEYNNSQSNTTKVKVHLRNGIAEIFDQHQDLMGKIDNNIIEVETNFENRLEKVLFVLQDGVFIVSNQGLDTTAETKGTSIYVYAKRVREISPNISLDEVSKQYEQKNSALEAETQKLTGNAT
Ga0007749_1198454	Ga0007749_11984542	F085112	LVTDKPAPITVALAQKADSDTAFQVFGANFSKGSLKNLVTDKPAPITVALAQKAD
Ga0007749_1200263	Ga0007749_12002631	F085112	KPSPITVALAQAKKGDSDTAFQFAGANFSKGSMKNLITDKPSPITVALAQAIKGDSDTAF
Ga0007749_1200643	Ga0007749_12006431	F028436	LEGLSKVQRERVVKEVLEKKGVNIKAQRLILKDLEDISEESVNTWLDDNGDLFGLTKTPAVTEEQEINRAALRQQDILTQNSLTPERTDDLETKIANAQSADEILSILRAQ*
Ga0007749_1200983	Ga0007749_12009831	F085156	EAELKEDRSARRSADGPLGGKLGIAGCNAGVDESFQDNIEISNV*
Ga0007749_1201871	Ga0007749_12018711	F100446	CLGVTPAEAGRDAHKGQVEKELIKLLPQTNDQQKGDTCMLLDQLKQVPKLPRTGGKSFSFSTFIKQEGERLQGTIARKGDEWSLESNNDGDVIFTSNGVSCKAPKVIGRQYKNVVAVSSATDKTIQILVDGKEACNVPVAGTFTEPLDAPLNLGSISDHIQAKVAKPTYIASGVRSNEIGLFSKEKPECIGA*
Ga0007749_1202897	Ga0007749_12028971	F014475	MVDGFTLGTNDGLDVGYALGRSDENKVGTIDGAPLGSSVGKTVGSRVGKVLGTIDG*
Ga0007749_1203395	Ga0007749_12033951	F084268	MLFLLNTPEYTNVQSNTTKVKVHLKNGVAEILDQHQDLMGRVENNIVEIETNFENKTEKNLFVLQDAVFIVSTKGLDKKLEKKTSVYVYAKNVKEINSRLAIDEITKQYEKKVSLLETETLKLS
Ga0007749_1203951	Ga0007749_12039511	F080073	GNVMIPDVMLSVLPSVNPPNAILHAKNPKTPFVTSNVKDLTVKLCALKKPVKWKIALNVLPFANPPTVLLIAKFPNPNVKPFVKNPNVTGNATNPNAPNPNVNLFVKTPLADLKLNAVNVMPMEPLLKELCSSKKLNKTLHAVNAKKML*
Ga0007749_1204811	Ga0007749_12048111	F034583	QLDPFVVFESSVSLLLFFWILIFLFVYILVPLVKLRFVIVSEKSSSHESGKISVPFYGNAFKFNDTFI*
Ga0007749_1204928	Ga0007749_12049281	F003081	MREEMFNDTRFGAEVFYMHVRGVDTIFVLSYMHILKKIYLKNYVSSESEG*
Ga0007749_1204928	Ga0007749_12049282	F000237	MLFFFHYIVALGISLSATHLSDLTLTIIANIFSVLNFTYKTYYIIFTNKHLNTDQLTRLMVLHYFTPYYLYLVKLHVLFCHESDSDSGENAYEDKSGTYISFYDAFLKEIQDAYTMFVFVYFLHHFNPSTVNYFFFERNISELDEIRFYGVAPHYFRPLMGLLVVSPSHYEGLMMGLFVLLAALPIIYNFYNVNNNYLPIIPMQSSLLQTSCFMLFMLSMYCTASMLPCGRYYYAPEGGYVGNPVKFSYQYAYLYMAILHHLDTIEHYGFQFAQTFARKCFGIYDKTKLIFKYKFYTFTSFKNFEDPDITYNLTFKNNNYNIALISSVKRMSR*
Ga0007749_1206165	Ga0007749_12061653	F001145	MTWDFVSFFLNSEEAFIELNPNILETNIINIGLLVGILLYANKVSFSVGLENRQKEIVQTIENAQKDVVKASNYYYLAEKGLTQSLFWLQSWKALYEKDKVDLVNIKYKLVKTGLTEAFATTENLVKVFENKSFLSLQRYIIFITASKILRKFLFLSETEQSKLIETRISNLGGENKVLQKK
Ga0007749_1206544	Ga0007749_12065442	F002730	LEGLDGIFEDWLNGLHDTESSFHIINLWLHSFDGFHLSGNFNEWLSIIESLQDSGSEGFLDVLDGSSLGNSGSGVVSGFGGEGRL*
Ga0007749_1206691	Ga0007749_12066911	F000155	MKFAAALIATVAANRFESMNEDELLVNLESTLSSALSSEARGDADAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0007749_1207136	Ga0007749_12071362	F001145	MISNFVSFLLNHEESFIEFNTNILETNVINIAILVGLLVYANKVSFSVGLENRQKEIIQTIENAQKDVVNASNYYVLAEKGFTQSLFWLQSWKILYEKDKIDVVNTKYNLVKTGLTETFVTTENLVKNFENKSFVALQKYIIFITASKILRKFLFLSEKEQSKLIETKISNLGGGNK*
Ga0007749_1207766	Ga0007749_12077661	F043736	SPPKGVAAENHKEWLTTWELLQLSTLPGFPLWEKEVYDLLALHLVELQSIFKAYASSSLQGSATDMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRLGKDQKNADKFGEEVPLPGCLSDMLTNLVLPNARHDTYAQEFAETTLPLPEVQAALGAQLEKLSQFYELVSAGRPFLELDQWLKTLEGKLLFSDIMVDGYVVRLTEPQARAAFYASAATPSSGLLPDEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004762: Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.SD (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences