NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029693

3300029693: Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_50m (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300029693 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0046785 | Gp0297564 | Ga0257137
Sample NameMetatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_50m (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size133047633
Sequencing Scaffolds14
Novel Protein Genes14
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_561
Not Available11
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Alternative Ecosystem Assignments
Environment Ontology (ENVO)aquatic biome → lake → saline water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationCanada: British Columbia
CoordinatesLat. (o)49.68Long. (o)-124.009Alt. (m)N/ADepth (m)50
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000344Metagenome / Metatranscriptome1257Y
F000388Metagenome / Metatranscriptome1201Y
F004023Metagenome / Metatranscriptome456Y
F019930Metagenome / Metatranscriptome227Y
F033437Metagenome / Metatranscriptome177Y
F036104Metagenome / Metatranscriptome170Y
F041277Metagenome / Metatranscriptome160Y
F046170Metagenome / Metatranscriptome151Y
F052683Metagenome / Metatranscriptome142Y
F071959Metagenome / Metatranscriptome121Y
F073054Metagenome / Metatranscriptome120Y
F093176Metagenome / Metatranscriptome106Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0257137_1000761All Organisms → cellular organisms → Bacteria5209Open in IMG/M
Ga0257137_1005928All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_562227Open in IMG/M
Ga0257137_1026857Not Available999Open in IMG/M
Ga0257137_1026960Not Available996Open in IMG/M
Ga0257137_1028733Not Available958Open in IMG/M
Ga0257137_1033772Not Available871Open in IMG/M
Ga0257137_1036508Not Available830Open in IMG/M
Ga0257137_1036996Not Available824Open in IMG/M
Ga0257137_1037770Not Available814Open in IMG/M
Ga0257137_1037910Not Available812Open in IMG/M
Ga0257137_1039189Not Available796Open in IMG/M
Ga0257137_1043403Not Available750Open in IMG/M
Ga0257137_1061029All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata611Open in IMG/M
Ga0257137_1067413Not Available577Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0257137_1000761Ga0257137_10007611F000388IKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKLVKELKNAKD
Ga0257137_1005928Ga0257137_10059281F093176ARRILLVFVLCVLAVGYLYQHNYSMKLTRSLSRLETERQLLAEKLDSVDADIVKLSSFARMESLWIAQGRPAVPVDRLGPIDGQPVALVRHTGADEAVH
Ga0257137_1026857Ga0257137_10268571F071959MASRNYLVMSNDMTFTDKKEYRTKALAAGLERCGTKSIGDINSDVPGLQAIPIANKSARVAAIKAYIETGAWPKTIDQRELAPLTDFVAAAAQDFWQTIALAAIGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVGGNIQAQFDMQPLGTRLETAAFFSEPVVIDPQELFAIQVLCQVIAGVTPVHIDNFLFE
Ga0257137_1026960Ga0257137_10269601F046170NAEFSQEEGNMIRIQDFGEVAYGVAVTLTSWWDNKRIEEGKIGTKDVFKKASFYTYLGVGLVATLMSVFGWMRRYEVWTEKISTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQAQSTQRSYQPEFNKTMAW
Ga0257137_1028733Ga0257137_10287332F019930MRKLNLKDYMVKVKAPDQMNPGKVIDGEYPYHTKDSILNLLFIRDLQLSGAELVKQNVLAMKLETCKDDEILLEDEEYNRIKRAIDTFKGFGRNDVGLVTRINEAEVVEVKTK
Ga0257137_1033772Ga0257137_10337721F052683KKGIMGPIISVFVLVLIISILSGLTFLFVGQLKSQVSETATGGENSTAYQAVNDTEAAGATVVGYLPLIFLAIIFGAILTLVLKIILPYINLGQQMGGGF
Ga0257137_1036508Ga0257137_10365082F000344MRPIHPHAAESGVGKHTARNCESAQACAAGKERVANAHPHKLAP
Ga0257137_1036996Ga0257137_10369961F071959MASRNYLVMSNDMTFTDKKEYRTKALAAGLERCGLKSIGDINSDVPGLQAIPIGNKSARVAAIKSFIETGVWPKTIDQRELAPLTDFVAAAAQDFWQTIALGAIGTVYTCLNALPAYTLPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVAGNIQAQFDMQPLGTRLETAAFFSEPVVIDPQELFAIQVLCQVIAGVTPVHIDNFLFE
Ga0257137_1037770Ga0257137_10377702F033437GVGARHALFPGGTRLDALAFAGGVLPDATLRGRRMFRSHGGTVPAVAGRDLLSEASAPGSDAPCRERRAGRGVDTPAISSSRVVTFTTRKAPAFGRPLASRYGSDLLPLRLHSLLQ
Ga0257137_1037910Ga0257137_10379101F041277MRPKTPLAVENGVGKPAAPEAPNVGTGKRVWRTPIPRFV
Ga0257137_1039189Ga0257137_10391891F036104VMGQDGFPLAIGIIIAAAVLGAASIAGLVLLAVLAI
Ga0257137_1043403Ga0257137_10434032F071959MASRNYLINSNDMTLTDKKDYRTKALAAGLERCGQKGIGNINADVPVLAGIPPANMEARVAAIIAYIETGKWPTTIDQRELAPLTDFVAAAAQDFWLTVALAAVGTVYTCLGLLPAYTFPAGRLMVCYGVSVDVAVLPVSRLIFRRGGVAGNIQAQFDMQPLGPRLET
Ga0257137_1061029Ga0257137_10610291F004023VVFCGLVLCCTHLSEITLTIAANILHTFFAFKGKFYXXLFTDKQLNTDTTIRLAYAHYLAAFYMAYLGLVHGVDMHYDXKNEVTYDGIDTEMAXXDEALSNELGHMMDVLIIITLIAXFMYPEPEALSYEIFMXGDIGLVTDVRYYGVAPHXYFRPFMAXLIACPHHKTGIFGLLFYFFVLFYQPVLHGTTEQNNYNKKALLF
Ga0257137_1067413Ga0257137_10674131F073054MKVAFEAQIMQNNIKSLRSMDKEARLTLEYRAEDNELVANINKLHSEEKTVFVVIMDKKETTKTDKK
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