Sample 3300028028

Basic Information
IMG/M Taxon OID	3300028028 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0127567 \| Gp0306211 \| Ga0265292
Sample Name	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 296A
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300028028 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0127567 | Gp0306211 | Ga0265292

Sample Name

Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 296A

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	475545597
Sequencing Scaffolds	34
Novel Protein Genes	36
Associated Families	33

Dataset Contents

Total Genome Size

475545597

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	14
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Archaea	7
All Organisms → cellular organisms → Archaea → Euryarchaeota	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	1
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

All Organisms → cellular organisms → Archaea

All Organisms → cellular organisms → Archaea → Euryarchaeota

All Organisms → cellular organisms → Bacteria → Proteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium

All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon

Not Available

All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia

Ecosystem Assignment (GOLD)
Name	Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada
Type	Engineered
Taxonomy	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Ecosystem Assignment (GOLD)

Name

Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Type

Engineered

Taxonomy

Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Subsurface (non-saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

Unclassified

Earth Microbiome Project Ontology (EMPO)

Free-living → Non-saline → Subsurface (non-saline)

Location Information
Location	Canada: Waterloo, Ontario
Coordinates	Lat. (^o)	43.442	Long. (^o)	-80.577	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Canada: Waterloo, Ontario

Coordinates

Lat. (^o)

43.442

Long. (^o)

-80.577

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004207	Metagenome	448	Y
F006745	Metagenome	365	Y
F009862	Metagenome / Metatranscriptome	312	Y
F013623	Metagenome / Metatranscriptome	269	Y
F021838	Metagenome / Metatranscriptome	217	Y
F027190	Metagenome / Metatranscriptome	195	Y
F031304	Metagenome / Metatranscriptome	183	Y
F032328	Metagenome	180	Y
F033648	Metagenome	177	Y
F034035	Metagenome	175	Y
F036991	Metagenome / Metatranscriptome	169	Y
F040026	Metagenome	162	Y
F040940	Metagenome	161	Y
F043801	Metagenome / Metatranscriptome	155	Y
F044394	Metagenome / Metatranscriptome	154	Y
F046098	Metagenome / Metatranscriptome	152	Y
F047712	Metagenome	149	Y
F048266	Metagenome	148	N
F049070	Metagenome / Metatranscriptome	147	Y
F050314	Metagenome	145	Y
F051904	Metagenome	143	N
F058901	Metagenome	134	N
F065251	Metagenome / Metatranscriptome	128	Y
F069483	Metagenome / Metatranscriptome	124	Y
F069627	Metagenome / Metatranscriptome	123	Y
F070271	Metagenome	123	N
F073376	Metagenome / Metatranscriptome	120	N
F080249	Metagenome / Metatranscriptome	115	Y
F086912	Metagenome	110	N
F087945	Metagenome	110	N
F088755	Metagenome	109	N
F090156	Metagenome	108	Y
F094578	Metagenome / Metatranscriptome	106	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0265292_1000001	All Organisms → cellular organisms → Bacteria	2887874	Open in IMG/M
Ga0265292_1000018	All Organisms → cellular organisms → Bacteria	488619	Open in IMG/M
Ga0265292_1000021	All Organisms → cellular organisms → Bacteria	444230	Open in IMG/M
Ga0265292_1000090	All Organisms → cellular organisms → Bacteria	190700	Open in IMG/M
Ga0265292_1000134	All Organisms → cellular organisms → Bacteria	149522	Open in IMG/M
Ga0265292_1000199	All Organisms → cellular organisms → Bacteria	107358	Open in IMG/M
Ga0265292_1000228	All Organisms → cellular organisms → Bacteria	96845	Open in IMG/M
Ga0265292_1000252	All Organisms → cellular organisms → Bacteria	91748	Open in IMG/M
Ga0265292_1000732	All Organisms → cellular organisms → Bacteria	38641	Open in IMG/M
Ga0265292_1001064	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	27157	Open in IMG/M
Ga0265292_1001245	All Organisms → cellular organisms → Archaea	23874	Open in IMG/M
Ga0265292_1001369	All Organisms → cellular organisms → Archaea	21751	Open in IMG/M
Ga0265292_1001831	All Organisms → cellular organisms → Archaea	16965	Open in IMG/M
Ga0265292_1002536	All Organisms → cellular organisms → Bacteria	12526	Open in IMG/M
Ga0265292_1002741	All Organisms → cellular organisms → Archaea → Euryarchaeota	11763	Open in IMG/M
Ga0265292_1005086	All Organisms → cellular organisms → Archaea	7122	Open in IMG/M
Ga0265292_1005563	All Organisms → cellular organisms → Bacteria → Proteobacteria	6636	Open in IMG/M
Ga0265292_1008624	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4682	Open in IMG/M
Ga0265292_1009389	All Organisms → cellular organisms → Archaea	4369	Open in IMG/M
Ga0265292_1009523	All Organisms → cellular organisms → Bacteria	4326	Open in IMG/M
Ga0265292_1009604	All Organisms → cellular organisms → Bacteria	4302	Open in IMG/M
Ga0265292_1010424	All Organisms → cellular organisms → Bacteria	4033	Open in IMG/M
Ga0265292_1014670	All Organisms → cellular organisms → Archaea → TACK group → Candidatus Korarchaeota → Candidatus Korarchaeota archaeon	3124	Open in IMG/M
Ga0265292_1039107	Not Available	1517	Open in IMG/M
Ga0265292_1040406	All Organisms → cellular organisms → Archaea	1482	Open in IMG/M
Ga0265292_1047637	All Organisms → cellular organisms → Archaea	1319	Open in IMG/M
Ga0265292_1048215	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
Ga0265292_1061373	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1103	Open in IMG/M
Ga0265292_1071433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	991	Open in IMG/M
Ga0265292_1114243	Not Available	720	Open in IMG/M
Ga0265292_1139637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	630	Open in IMG/M
Ga0265292_1149637	Not Available	601	Open in IMG/M
Ga0265292_1149703	Not Available	601	Open in IMG/M
Ga0265292_1160339	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	574	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0265292_1000001	Ga0265292_10000011130	F009862	MAKSREETPLQIKCPNCKQTREPDVNETTRRYVCSVCNEPVDVQVIIEKKKRGIK
Ga0265292_1000018	Ga0265292_1000018209	F040026	MPYTTNGSGFYFLQSAYLNVLEDEGVVSPETALPLDEIDSLINPFVRFGGFGQGWLVVNKLSRYGVLQACSGKRYYLDQNAADQFRYSFARWLPW
Ga0265292_1000018	Ga0265292_1000018253	F050314	MSDALHLVRPDLHVALDCPADWTIMEMDEQAGLRVSDPADPRVALQVTYDDSGSPLDETSERLRNGLPEDTPCEQGTLRRGGVDADGRASPDGPPVKALTFSARDSSFVYQVLVAEDTGHRWTVRLETLQRKEWWQQSRTLETMLASLLLL
Ga0265292_1000021	Ga0265292_1000021279	F086912	MIEEFIQSLQQAEVEADGIIKAARERVQTIRRDSESALAMVRASAELMLQRRLDPIDQETNQHMKLAEDQFCLDLKQQLESLELRAHDRRRVALDLLLSRLTAR
Ga0265292_1000090	Ga0265292_100009093	F090156	MRKTTEMISDNEQPFELPAELRREVSALFAPMDRSLASSVTAVIGLRRSRRRLLQGLWLGFSPVMAVAIVVVLYVGGAVLPRRLSLATSKGAFMPPNMEIRAQDAASSGLVGSESIAAPATACREPSFRVVLDGDVARRQLLATWLRARHADIALELDTAVPGREVALTLEPDEVRGFAALMALHGFVGQEPSGLRTVTRCSPASWASSLGASSLFICIIP
Ga0265292_1000134	Ga0265292_1000134111	F040940	MGTLYNIFSLVFGINPIVVGLVAFIAGIISLAKRDKSVKKLTSIAYIIAGVTAVYFGVILSRSSYNM
Ga0265292_1000199	Ga0265292_1000199107	F088755	MDEYVEVTVVAGQAEAERIVQALGAAGITAFFRGTTGLEGMFRVMAVQSRLDEAREVASTFQGCECQQEGNHDEPEVHSQTRKRVPDRGTVE
Ga0265292_1000199	Ga0265292_10001992	F051904	MTRTGRIMVVTVGLLLAVTLATKLTFREYDFGTSLPGGFPEDVPIVPGTITSCRTARSDDLVRVVEVHIQSGLPFQDVVQFYRSAFATGATEHWNVPEFPLSGPGATETSSNALFGKTTVVVIISATGATTSVLVQVRGTSIFTLPR
Ga0265292_1000228	Ga0265292_100022830	F048266	MRRLMTIMAFAGGLLGLGNYVWDGRTMAPGGRNLYVPSNIASVLLLAIAGSVAATMLLRDHGRMTEEERKEYRATLALSIAALAILSTWILFRAIRTA
Ga0265292_1000252	Ga0265292_100025274	F080249	MADDKTKIGKRDRNLISFKQKYEVAYAVNQLKKQFPDETKQDIKDVLFEAAKKISPSEGRDKIMRLARKNLQN
Ga0265292_1000732	Ga0265292_100073216	F040940	MGTLNNIFSLVFGINLIVVGLVAFISGIVSLVKRDGSVKQLTSVAYIIAGVAAVYFGIVLSRSAYNM
Ga0265292_1001064	Ga0265292_10010645	F006745	MKTSERGRRISSAVALYVIILVAFQVFLITVAVEAIQTDHESLAWATAGVSVVLAGAAVAFLHYLRP
Ga0265292_1001245	Ga0265292_10012458	F043801	MATKLMGECPCGFQFTTPHGQDDAVAVLMNHVERIHKNDMPKGVTRTEALKLIKPAEEKW
Ga0265292_1001369	Ga0265292_10013691	F013623	MGPMDAFLRVSFAGFAAILAAVSVKSYTRHRGRRGLLLAAAFGIFLAEGAWLLAEIALAMAPSVGTEWVALNLAILVSLYLALLR
Ga0265292_1001831	Ga0265292_100183122	F058901	MKRPNWKALGLVGFIMLGAVSAALGCPFFRNPENYVSAGGMVGYVQHLVDVHRKK
Ga0265292_1002536	Ga0265292_10025365	F069627	VNLTDEDAVPIYMKISEKVLHLRRLGMAYAIIAERLGVNLWMAKKAARWGMSR
Ga0265292_1002741	Ga0265292_10027417	F044394	MCDWEMDRQHNAGLNILKSALASNEALARAVRFQPGALRDDVVIPLCDLPALLAGAREEPSGVESAMSRAS
Ga0265292_1005086	Ga0265292_100508610	F094578	MHNIMNDKKERPKWPLQRLKGMYFAMHCWKCKKFELPMEDYKQRCEENIQKIIDNLEIKEMKFKEFNIIIKNSTFCKFEKRDFRNDCPICKKFGIFNYP
Ga0265292_1005563	Ga0265292_10055637	F004207	LSVTLFEKTPILQALEGDDDDANITTIANQLNLFN
Ga0265292_1008624	Ga0265292_10086242	F087945	MGGVPAEIIGDRTAEQPCDGWNPSDHPEFREFLDHVAEILAHEYVQRMRETADPKDIEAWEKGGP
Ga0265292_1009389	Ga0265292_10093894	F073376	VEEEQIDGIVYNAEGQVGRLAFPKLYDLVFTDSRLVGIVTVKTGGARLAGQLLGGVIGQAIAASISKGGADKKRGAYAGMPLDQVVGQDSANFAAPYDSIGNPQIKGLFSKRLEMRVGRKKAVFRLPKDQVPMTRDLIGRRFSESRK
Ga0265292_1009523	Ga0265292_10095236	F070271	MNHLLITFEILLTVVAPLLVLYLKGAWKQQPMIACMSTIPILWYFVYAPIHELSHLLGAYLVGAQIIEVKLIPRFWAGETGGAWIKSEGFINKWSQLIMIISPYFLDLLSIAIGIYILQRKLSRNAFLIGFLFMSLCLRPTFDLICETIGFATGFRGDLFHIALTAGGFATWTFLALSIAFSIYAIVVVIGRFKGFPQEAAKAAT
Ga0265292_1009604	Ga0265292_100960410	F069483	IRTASEIPVEVDLQNEETVPIYMRISDKVLRLRRLGMPYANIAERLGVNLWMAKKAARWGNIQKG
Ga0265292_1010424	Ga0265292_10104242	F009862	MAKQSEKPIEIKCPNCKQTREPDFNETTHRYVCSICNEPVDVQVIIEKKKRGLK
Ga0265292_1014670	Ga0265292_10146703	F031304	MKGKCSRCKKRLTLENASPSVVRGGYGRCRLCETEHTKKRSRTLGGKFNSGSAQAKFNGHKWELNFQQYAAIVAFDKCFYCGAPLPKAAAGLDRESNGDYAWDTVLPCCGKQPRATGPRGCNEIKSGEIPPILMFARRWYEKYGKLPTEQDFIDRLQNFRTERDKAYKILCGLNSEELTKLRRSTSVQKFLASLERK
Ga0265292_1039107	Ga0265292_10391073	F034035	LSNTARQGRIGPVLVCRQSSEPYDDDAMNAKNVRINLRYDQADLESLVQYAKAHDVALDGRYDIRMPPCLNIWTHTWTNPGCKAESSLMFSLEFDLETASLMSVSLQPGYDWAVFLDELARLETTALGDVVYGKRRAEPIA
Ga0265292_1040406	Ga0265292_10404061	F065251	MYLRSFKKSGKKYYYIAKAVRKGKRVIQKYVLYLGTADTLYEKLKKLIKV
Ga0265292_1047637	Ga0265292_10476373	F065251	MYLRSFKHGKKRYYFIAKAVRKGKKVIQKSILYVGSIDSLYEK
Ga0265292_1048215	Ga0265292_10482151	F036991	LPTAFPPLSVTRKLSGFVAHDLSGLLRSSMEVTDETDGDATGDPEDAI
Ga0265292_1061373	Ga0265292_10613732	F032328	MKFCISFFSLLIPVFTVSEGESFTFSHSGKSLITITDSITQTSRFDVFTCQPPEFFTKSELPSRLQFNMINKDGSFCIITLYKSLPAKEDAMKDLTSQWNEQVVKRLTKANKKPEKIMTGQFLDGWESTLAIGNFYQNKKKAVVMLYSFRNNKTTACAVFEMSDKIFKGPVEKFSKNLHLINQ
Ga0265292_1071433	Ga0265292_10714332	F047712	MNDQQPYRMIIRHSIIGLPPGATYKLRFDQIRDVFPPGMVGNDIHPNALADLRAFADDVGCRVTKDDEGKTFVFCKRD
Ga0265292_1114243	Ga0265292_11142431	F046098	MRFILIIAAIVLAIVGILGLFPSIGWAHVQLWRAILEIVVGGLVLIIGVRQS
Ga0265292_1139637	Ga0265292_11396371	F021838	RYHRDNTAIGEIYVIERTIGVHKDLPALAGNVLKLRHEPLEIAGWQREQKPIAWPL
Ga0265292_1149637	Ga0265292_11496372	F033648	MIGIKHVHGTTTSLNGCKVEIDGDVEYALIPPRITGFHGAVHISGGPGCPNGDLYFGIEPKGRVAPLLPVDECKP
Ga0265292_1149703	Ga0265292_11497031	F027190	RDTAGWKPALVRLRAHLDSRVRVPDLADTVGPVTESNCAGAIPPGGKQLKVNEQSVTNVRVPGQCELDSIGGFGEPSSDWRSPNKIVLPALREWNASGREPQMVGDGMFGSPSDVNQGTTAGGERADRGQSPRSSEEAGNDRGAKGGRDVVLGAVKTPSQKGPGSAARLCARMRRNTGLGVQRRPDSGPPVQQVSGAIS
Ga0265292_1160339	Ga0265292_11603391	F049070	MNSTIATPEHVKERWRTAGRFAGVIEAEVKARRNPFAVRVVSWFNLCRLCQDVEEQMLLASPPNEDDQRLHRALLSTAIGGGEGLLLEGADSEALKPLGLTPEAIAAKVES

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300028028: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 296A

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences