Sample 3300026697

Overview

Basic Information
IMG/M Taxon OID	3300026697 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0095510 \| Gp0072093 \| Ga0207569
Sample Name	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-12 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	14171299
Sequencing Scaffolds	10
Novel Protein Genes	12
Associated Families	12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
Not Available	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil → Soil Microbial Communities From Arlington Agricultural Research Station In Wisconsin And Kellogg Biological Station In Michigan, Replicating The Bioenergy Cropping Systems Trials (Bcsts)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → agricultural field → agricultural soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Wisconsin, United States
Coordinates	Lat. (^o)	43.3	Long. (^o)	-89.38	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001663	Metagenome / Metatranscriptome	655	Y
F004285	Metagenome / Metatranscriptome	445	Y
F009969	Metagenome / Metatranscriptome	310	Y
F022675	Metagenome / Metatranscriptome	213	Y
F029268	Metagenome / Metatranscriptome	189	Y
F045182	Metagenome / Metatranscriptome	153	N
F068551	Metagenome	124	N
F071766	Metagenome	122	Y
F072316	Metagenome / Metatranscriptome	121	N
F084031	Metagenome / Metatranscriptome	112	Y
F086321	Metagenome	111	N
F095640	Metagenome / Metatranscriptome	105	Y

Family

Category

Number of Sequences

3D Structure?

F001663

Metagenome / Metatranscriptome

655

F004285

Metagenome / Metatranscriptome

445

F009969

Metagenome / Metatranscriptome

310

F022675

Metagenome / Metatranscriptome

213

F029268

Metagenome / Metatranscriptome

189

F045182

Metagenome / Metatranscriptome

153

F068551

Metagenome

124

F071766

Metagenome

122

F072316

Metagenome / Metatranscriptome

121

F084031

Metagenome / Metatranscriptome

112

F086321

Metagenome

111

F095640

Metagenome / Metatranscriptome

105

Scaffold	Taxonomy	Length	IMG/M Link
Ga0207569_100292	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	871	Open in IMG/M
Ga0207569_100573	Not Available	740	Open in IMG/M
Ga0207569_100673	Not Available	711	Open in IMG/M
Ga0207569_101176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	620	Open in IMG/M
Ga0207569_101396	Not Available	596	Open in IMG/M
Ga0207569_101431	Not Available	593	Open in IMG/M
Ga0207569_101516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	584	Open in IMG/M
Ga0207569_101587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	576	Open in IMG/M
Ga0207569_101594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M
Ga0207569_102222	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	529	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0207569_100292

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

871

Open in IMG/M

Ga0207569_100573

Not Available

740

Open in IMG/M

Ga0207569_100673

Not Available

711

Open in IMG/M

Ga0207569_101176

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium

620

Open in IMG/M

Ga0207569_101396

Not Available

596

Open in IMG/M

Ga0207569_101431

Not Available

593

Open in IMG/M

Ga0207569_101516

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia

584

Open in IMG/M

Ga0207569_101587

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058

576

Open in IMG/M

Ga0207569_101594

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

575

Open in IMG/M

Ga0207569_102222

All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria

529

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0207569_100292	Ga0207569_1002922	F022675	MRSNRRRNWFIKRIALGLAIAAVAAPVAQAKTDEGSSVQVNGYQAFVTDFPPSQLNASDYGMPRAMPVDYAVNRGDQIEVVRALPSGSPSDKIEFVRTQPRSIGEPQVVAAGFDWSDGAIGAGLALGLVLLGWGAALATR
Ga0207569_100573	Ga0207569_1005731	F086321	MNPSKKEIYKILERFTSQKGGILFILHKSFSSDSKPPQEQTSVVRDDERKSAIFEINFGTVAGLSMLCECEKALADQVMSLDFLDSGIEGDVIWFGGMLDKSGSEFIGSTYDDGLKSAPVEQSE
Ga0207569_100673	Ga0207569_1006731	F004285	MSLSWISNRSMRVSPRARLVDDGAAEALRRKLEAIEWRPQNGFLKDQIVERDELVSVR
Ga0207569_100907	Ga0207569_1009071	F029268	MKRSIRLALLVCASFVGLAFAGPALAAYNPSLTIEQTSYKLGAPATADVFIAIGQDDDPTAKFTIFSPAGYSSNLT
Ga0207569_101176	Ga0207569_1011761	F072316	SFATSLLLVLAVGLLIVSTSYRAIVLRNHEDTAHQQVGADWNVQIAVPDDPLVAASSVPPNSVAVIRSQPVFELPGSFTLSPSVIAVDPERFATGGWWRSDYSQTPLETWLQDIEVPDPAVPVSGESFSATVTAGAPAEGLQLQVTYETADDHVRTATAGTIEQGTKTYEANLDGADAILSITFLEEGTAEVPDSFALELRDVTAG
Ga0207569_101396	Ga0207569_1013961	F071766	MDEDFITLEVEEEGRGRLQFELPLDITDEEIAYIKSLVPRAESGLLELLDPDTGEVV
Ga0207569_101431	Ga0207569_1014311	F068551	MQLGVIVIFIFVILGIVFFIVFGIGYFKTENPQNENLQNRSAAVFPNPDSIPPECKYTPNDLLCQFQLEKQKMKLSQNE
Ga0207569_101516	Ga0207569_1015161	F009969	ILVQTTRSIRALIGVATEGAPADEIDLAYHALLDQCGAAEREALRAPPDPIARFDARAAAVLSVAYRPVLDVLCSGRSLRSEDVELAQKSSGWLNLAYEALLDGDHDTVERCLEMASAFVAADEDTRDAAPPA
Ga0207569_101587	Ga0207569_1015872	F045182	ASREMLHSAKYQDNPVIQKRMDVLKFLDSVWTKGVPLYYWDGKELNQHIGLYHNENLAGWMLAMRNIKGMKSDAVVDEAAAQVRKKMRRAG
Ga0207569_101594	Ga0207569_1015942	F095640	MKRALLAASVFALALPTQAFARGEFDPTTEFEQHEWVSIHLGPLDLSI
Ga0207569_102222	Ga0207569_1022221	F084031	LIRFVVSRVLQSLVALAILSVVVFILARATGDPLQLIL
Ga0207569_102222	Ga0207569_1022222	F001663	IKTKLIPVDYPAFRKNWVDRKTPGSVGYFNIANRDWMGTFALLEKQAYSPSKPTDTVNDPEVDGMLAQVMKQTDREKINALMRGVYTRIRSEHLGMPIVYLHSPYAASKKLGKWNPGSVMYDLFFDELASGK

Scaffold ID

Protein ID

Family

Sequence

Ga0207569_100292

Ga0207569_1002922

F022675

MRSNRRRNWFIKRIALGLAIAAVAAPVAQAKTDEGSSVQVNGYQAFVTDFPPSQLNASDYGMPRAMPVDYAVNRGDQIEVVRALPSGSPSDKIEFVRTQPRSIGEPQVVAAGFDWSDGAIGAGLALGLVLLGWGAALATR

Ga0207569_100573

Ga0207569_1005731

F086321

MNPSKKEIYKILERFTSQKGGILFILHKSFSSDSKPPQEQTSVVRDDERKSAIFEINFGTVAGLSMLCECEKALADQVMSLDFLDSGIEGDVIWFGGMLDKSGSEFIGSTYDDGLKSAPVEQSE

Ga0207569_100673

Ga0207569_1006731

F004285

MSLSWISNRSMRVSPRARLVDDGAAEALRRKLEAIEWRPQNGFLKDQIVERDELVSVR

Ga0207569_100907

Ga0207569_1009071

F029268

MKRSIRLALLVCASFVGLAFAGPALAAYNPSLTIEQTSYKLGAPATADVFIAIGQDDDPTAKFTIFSPAGYSSNLT

Ga0207569_101176

Ga0207569_1011761

F072316

SFATSLLLVLAVGLLIVSTSYRAIVLRNHEDTAHQQVGADWNVQIAVPDDPLVAASSVPPNSVAVIRSQPVFELPGSFTLSPSVIAVDPERFATGGWWRSDYSQTPLETWLQDIEVPDPAVPVSGESFSATVTAGAPAEGLQLQVTYETADDHVRTATAGTIEQGTKTYEANLDGADAILSITFLEEGTAEVPDSFALELRDVTAG

Ga0207569_101396

Ga0207569_1013961

F071766

MDEDFITLEVEEEGRGRLQFELPLDITDEEIAYIKSLVPRAESGLLELLDPDTGEVV

Ga0207569_101431

Ga0207569_1014311

F068551

MQLGVIVIFIFVILGIVFFIVFGIGYFKTENPQNENLQNRSAAVFPNPDSIPPECKYTPNDLLCQFQLEKQKMKLSQNE

Ga0207569_101516

Ga0207569_1015161

F009969

ILVQTTRSIRALIGVATEGAPADEIDLAYHALLDQCGAAEREALRAPPDPIARFDARAAAVLSVAYRPVLDVLCSGRSLRSEDVELAQKSSGWLNLAYEALLDGDHDTVERCLEMASAFVAADEDTRDAAPPA

Ga0207569_101587

Ga0207569_1015872

F045182

ASREMLHSAKYQDNPVIQKRMDVLKFLDSVWTKGVPLYYWDGKELNQHIGLYHNENLAGWMLAMRNIKGMKSDAVVDEAAAQVRKKMRRAG

Ga0207569_101594

Ga0207569_1015942

F095640

MKRALLAASVFALALPTQAFARGEFDPTTEFEQHEWVSIHLGPLDLSI

Ga0207569_102222

Ga0207569_1022221

F084031

LIRFVVSRVLQSLVALAILSVVVFILARATGDPLQLIL

Ga0207569_102222

Ga0207569_1022222

F001663

IKTKLIPVDYPAFRKNWVDRKTPGSVGYFNIANRDWMGTFALLEKQAYSPSKPTDTVNDPEVDGMLAQVMKQTDREKINALMRGVYTRIRSEHLGMPIVYLHSPYAASKKLGKWNPGSVMYDLFFDELASGK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026697: Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-12 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences