Sample 3300026032

3300026032: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1 (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300026032 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0116075 \| Ga0208419
Sample Name	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	86882294
Sequencing Scaffolds	53
Novel Protein Genes	59
Associated Families	55

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	14
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	8
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2
Not Available	3
All Organisms → cellular organisms → Archaea	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Glaciecola → unclassified Glaciecola → Glaciecola sp. HTCC2999	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → wetland area → soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Antioch, San Francisco Bay, California
Coordinates	Lat. (^o)	38.052479	Long. (^o)	-121.7687	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001127	Metagenome / Metatranscriptome	769	Y
F001667	Metagenome / Metatranscriptome	654	Y
F001884	Metagenome / Metatranscriptome	622	Y
F005490	Metagenome / Metatranscriptome	399	Y
F006283	Metagenome / Metatranscriptome	377	Y
F006956	Metagenome / Metatranscriptome	361	Y
F007188	Metagenome / Metatranscriptome	356	Y
F007326	Metagenome	353	Y
F008960	Metagenome / Metatranscriptome	325	Y
F009376	Metagenome	319	Y
F010356	Metagenome / Metatranscriptome	305	Y
F012310	Metagenome / Metatranscriptome	282	Y
F017218	Metagenome	242	Y
F018378	Metagenome / Metatranscriptome	235	Y
F018782	Metagenome / Metatranscriptome	233	Y
F021644	Metagenome / Metatranscriptome	218	Y
F022061	Metagenome / Metatranscriptome	216	Y
F022369	Metagenome / Metatranscriptome	214	Y
F023824	Metagenome	208	Y
F024167	Metagenome	207	Y
F024738	Metagenome	204	Y
F027012	Metagenome	196	Y
F032230	Metagenome	180	Y
F032294	Metagenome / Metatranscriptome	180	Y
F032466	Metagenome / Metatranscriptome	180	Y
F036220	Metagenome / Metatranscriptome	170	Y
F037405	Metagenome / Metatranscriptome	168	Y
F041902	Metagenome	159	Y
F044670	Metagenome / Metatranscriptome	154	Y
F044690	Metagenome	154	Y
F046616	Metagenome / Metatranscriptome	151	Y
F047517	Metagenome	149	Y
F054654	Metagenome / Metatranscriptome	139	Y
F054949	Metagenome	139	Y
F055239	Metagenome / Metatranscriptome	139	Y
F057184	Metagenome	136	N
F057190	Metagenome	136	Y
F064019	Metagenome / Metatranscriptome	129	Y
F065866	Metagenome / Metatranscriptome	127	Y
F067494	Metagenome	125	Y
F067500	Metagenome	125	Y
F074066	Metagenome	120	N
F078319	Metagenome / Metatranscriptome	116	Y
F078917	Metagenome / Metatranscriptome	116	Y
F079748	Metagenome	115	Y
F081902	Metagenome	114	N
F085279	Metagenome / Metatranscriptome	111	Y
F088967	Metagenome	109	Y
F096144	Metagenome	105	Y
F097647	Metagenome / Metatranscriptome	104	Y
F103507	Metagenome	101	Y
F103866	Metagenome / Metatranscriptome	101	Y
F103867	Metagenome	101	Y
F105834	Metagenome	100	Y
F106139	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208419_1000206	All Organisms → cellular organisms → Bacteria	6590	Open in IMG/M
Ga0208419_1000228	All Organisms → cellular organisms → Bacteria	6433	Open in IMG/M
Ga0208419_1000456	All Organisms → cellular organisms → Bacteria → Proteobacteria	4746	Open in IMG/M
Ga0208419_1001058	All Organisms → cellular organisms → Bacteria	3230	Open in IMG/M
Ga0208419_1001360	All Organisms → Viruses → Predicted Viral	2855	Open in IMG/M
Ga0208419_1002131	All Organisms → cellular organisms → Bacteria	2312	Open in IMG/M
Ga0208419_1002188	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2286	Open in IMG/M
Ga0208419_1002460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2151	Open in IMG/M
Ga0208419_1003696	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1772	Open in IMG/M
Ga0208419_1003949	All Organisms → cellular organisms → Bacteria	1712	Open in IMG/M
Ga0208419_1004279	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1648	Open in IMG/M
Ga0208419_1004781	All Organisms → cellular organisms → Bacteria	1561	Open in IMG/M
Ga0208419_1005006	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1524	Open in IMG/M
Ga0208419_1005233	Not Available	1489	Open in IMG/M
Ga0208419_1007097	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1280	Open in IMG/M
Ga0208419_1007184	All Organisms → cellular organisms → Archaea	1272	Open in IMG/M
Ga0208419_1008659	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1164	Open in IMG/M
Ga0208419_1009181	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	1132	Open in IMG/M
Ga0208419_1010228	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1075	Open in IMG/M
Ga0208419_1010358	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1068	Open in IMG/M
Ga0208419_1010361	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1068	Open in IMG/M
Ga0208419_1012126	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	986	Open in IMG/M
Ga0208419_1013747	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	928	Open in IMG/M
Ga0208419_1014154	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	913	Open in IMG/M
Ga0208419_1017077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	830	Open in IMG/M
Ga0208419_1018575	Not Available	795	Open in IMG/M
Ga0208419_1019715	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	771	Open in IMG/M
Ga0208419_1020905	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
Ga0208419_1023180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	711	Open in IMG/M
Ga0208419_1023961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	700	Open in IMG/M
Ga0208419_1024678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	690	Open in IMG/M
Ga0208419_1025475	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
Ga0208419_1027458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
Ga0208419_1027920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Alteromonadaceae → Glaciecola → unclassified Glaciecola → Glaciecola sp. HTCC2999	647	Open in IMG/M
Ga0208419_1029638	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
Ga0208419_1029770	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	626	Open in IMG/M
Ga0208419_1030448	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
Ga0208419_1030499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	619	Open in IMG/M
Ga0208419_1031653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	607	Open in IMG/M
Ga0208419_1031843	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	605	Open in IMG/M
Ga0208419_1032044	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
Ga0208419_1032338	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
Ga0208419_1033045	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
Ga0208419_1033563	All Organisms → cellular organisms → Bacteria → Terrabacteria group	589	Open in IMG/M
Ga0208419_1036697	All Organisms → cellular organisms → Archaea	563	Open in IMG/M
Ga0208419_1037323	Not Available	558	Open in IMG/M
Ga0208419_1038339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
Ga0208419_1041696	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
Ga0208419_1043453	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
Ga0208419_1044395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
Ga0208419_1044417	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	510	Open in IMG/M
Ga0208419_1044424	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → unclassified Nitrososphaeraceae → Nitrososphaeraceae archaeon	510	Open in IMG/M
Ga0208419_1044928	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208419_1000206	Ga0208419_10002067	F012310	SKISPADYARHLRAIGQELEALHFSHFNLELIGDAYVVWVKPSDPTETNNPLLRISKSRLQKLWRQRASHRTTGDEGSYAVPPTGKRLRYSVQELDRIERKQRARRQQQSGTADGHSLSQLLRTLGDLVGRKSERLLGITWQELSVGVVVETQQGRREIDVFRPDNLYDLWVRMYLKRHNRAFIDNPR
Ga0208419_1000228	Ga0208419_10002281	F044690	ATVERVLEAILRAHRNAEERSASVRENALRLLPETKPGLVDAIADTYKELRIWDINGGADKERGEASIKFFEESGLLKKGAVSFRQSFETGPLDRILKKIGRK
Ga0208419_1000456	Ga0208419_10004566	F041902	MADWKMIDADGHIREVESDVFEYLPDYYKNRRAAVLYFPLLPHHGWHRQAGLGAVGASFLIPTLEDWRKALERGN
Ga0208419_1000907	Ga0208419_10009074	F103507	MNFFNFVPWILLGLQAAIVIASLLGYGIFTSRPDLLAYIDPQARFFTWAFHGFAVG
Ga0208419_1000985	Ga0208419_10009856	F103867	MSTIKEIMQIGVGMPDRETFAHFSHDMLGLPTTNSPDGNVTYMRVDRYRHRLAARTAREPVLDYIGFDVGGPA
Ga0208419_1001058	Ga0208419_10010581	F009376	MSVQTHDSSEQQLWLFSRRADFWLASAGASAGLVAAVLVVLWHGDREIDALDFVLSEAHLGATYEAVIRRRLWRSLPVDVLLVPFAILAITYALSMSGQTTLLTSIAMYAAIWHRGRQSLGVARFYQRGIGGAASPAHQRLFHGAVYLPMLAALLAYAHLAPLEYEGEPYLALNLGGEVASLVAIAAAGWVIAYFAWTLWQSRAERLTIAPRNGGIQIHPGECWVILAHAVAF
Ga0208419_1001360	Ga0208419_10013605	F078319	MNCGAIATFGVTMILLVTVSLISPHPAFADDYEKSQVISQTNECGNYWFPVNIICSNLNSQAQGEENDVAMATTTSDSDTNYG
Ga0208419_1002131	Ga0208419_10021312	F024167	MSLIDLTVMYGHLEGAGSGFARDPSGYLSIASGIFHKHGLNVSWQHVQGTEQRYHRLEDGSAQISLLVGRASLQHFLTSKTTRILGCVMNSCPYYLVASPAIETPKDLKGKVMACREGPSRNTPIAEAFYDMARLRVGGDLTLQLSSGDQDAFDLLIVGKAQAALLPRPFAFLAEENGFKRIPDWPEIVDDPLPITIETTGKLARERVNDFATFIAAHREGIGYFKANRAEAIGVLEKQFGHSRAMAEKIFSDYVICMDETLKVDFKQFEKLLSQVAPQGALDAQRLASEWIVPGALKE
Ga0208419_1002188	Ga0208419_10021881	F044670	MSVGVNVLWYDASNLDNRRNQAAHNLDICSSSNIASGGCRVGKDGDWIDVFLNWRYTF
Ga0208419_1002460	Ga0208419_10024603	F054654	MKKLIIALAVAALGVGSLGVSLAAAVPEITPRADQSVEIWCDSDATNLDGTGPGSITPGDSGPEGGAEDDVLAKRLDARAIQPEKDPGGKDTATDRFNSTAGVVQGWFCGEL
Ga0208419_1003696	Ga0208419_10036962	F007326	MDQVNFDAVIEQAITKVTRSRNGEKPPVFVTLSPALPQVPWKDSALKQFLQFFLYESLLTSDANAAIEISLRRRSLLKDLTVFVGVQPSYWVQLRISGRGLKIAENHVENLFTDVGYRCEEWVGVSGSNARLGIFGTMCAPKLKMVFCLESTRHRLRCDLLLPVHDHCSVPCLLEGAA
Ga0208419_1003949	Ga0208419_10039491	F018378	MRNPPILVSVIGFFGAIAGFYWIYLGLRLLGFDWFGALGDLERFEQSGLWGWLALAAGIAWLIAAFGLWAMQRWAWVFAMVVAGFALFESFLWFLEAPGTGVGFASAIMPLLIILYLNSKDIKSQFVDGYTEPA
Ga0208419_1004279	Ga0208419_10042791	F079748	KYLIIVASMTAILVGATALSITESAFAGKKKYEKSQAISQANACGNGVLPLNVFCQNLVSEIQGDGNAVNIIGVQ
Ga0208419_1004279	Ga0208419_10042793	F024738	MLIATSAVATEDAFAGKKKHYEKNQATSQANACGNGELPLNVGCQNVGSQIQGDENVVSQAADQAFPAFHHGAK
Ga0208419_1004781	Ga0208419_10047813	F032294	RGGVEEDYPLHAHTRDFLDKLKAKNRKTNAPMEVGYNSALPALLALEAMKDNKVLAWDPVARKSKAL
Ga0208419_1005006	Ga0208419_10050062	F096144	MRRGRPGRNRDIALTTLIDLLVQVIFVFTLILISADVIEGRPEERGWVTPEVWKTLISIFDVDPRTVRGPDAQVRAIQATYDRARDDLERVKEDLEACDAKSAA
Ga0208419_1005233	Ga0208419_10052331	F032466	MRAMSDKGIHLVRAHLAKLPPSSTLTIAQLRAQYDRAERAFPTPPD
Ga0208419_1007097	Ga0208419_10070971	F001667	MNTIYMVIVAAMTVMLVGATALATTDSAFAGGKKHYEKNQAISQANDCGNGFLPENVGCQNIASQIQGDENAVSLA
Ga0208419_1007184	Ga0208419_10071842	F001667	INKSFFFAISMNTKYMFIVAAMAVMLIGATALATEDAFAGKKKYGKNQAISQANDCGNGFLPENVGCQNTASQIQGDENVVVTAADQAFP
Ga0208419_1008659	Ga0208419_10086592	F081902	MNILSALARFLFLLILLIVPIVPSFATTIVVLKTQSEIVAGAESMGVYLTGDGRISNRFCKIHQVHDFFIASAGFFDTRAGHRLNIKEIVTRAARKSDPVSVAVNRSSRAIANALSQALSDAREDDGLYNILVHGNVVTFFFGFEDGKPATYAHRFSVMTQRGHAKEAPLIEVTHDNCGPRCVPADGHPYLMHTRSQAMDDFRLKNRGLLRDHPVAFVRSIIFSDIAANKHRSGPPVDILRINRNGPQWIEKKPNCP
Ga0208419_1009181	Ga0208419_10091811	F079748	SKTVIQIIRSMNNKHLLIVAAVTVMLIGATALSTTDSAFAGKKKYEKSQAASQANECGNGELPLNVFCQNLLSQIQGDGNAVNVIGVQ
Ga0208419_1010228	Ga0208419_10102281	F023824	ALLLLGLLGLAAAAAAQFGDADRYFGLEWTGGERRGRPNVNGYIVNQYRVRAENLQLRVESLDASGKTVATTSGYVANVPAGARVYFEVPVKDRAPRYRVTIVSWEWRDTGGQ
Ga0208419_1010358	Ga0208419_10103581	F022061	MGFFRPEIETALKMIGIAGLITLIVLPVAWGYEQRKQARTWQNVACTYRMKEVARRTPMIATLEYRGDACTTLEQLGLDLDLPR
Ga0208419_1010361	Ga0208419_10103612	F027012	PIRAVPGTSPINTDYFQLSVPKNVAHPNLAKLFVGFMVTKEAQAILQKHESRSSHLVEGTIMQKYLKDNRIEVQEPKVSIAYYLKGDTDEGLQFKAELAKILKQ
Ga0208419_1012126	Ga0208419_10121261	F022369	MHKHKLIALQKIIEEKIGSLREEVEIATNVKLNPLYIADRKDEIEFLQWTIRTIIPILYYDNEERQQLRSTKMRLELAETIRFENILSERVQDLNLKLKDSNNLRESDVLINEIDTLESVLGRLSDLKYGDEARAIEIAEANNNYQLANRLREQVIKIQDMESEINAQIQMQM
Ga0208419_1013747	Ga0208419_10137472	F067500	VIATPKKSFGSVDGYERHVVTRHPNLPCNAGPADIKFYRLENQDMPWEREIKADVAWN
Ga0208419_1014154	Ga0208419_10141542	F032230	SAAREAHSLTPGMADPESYRSHERHREQMKVLTFDELVNQRRVLVGTADEVRETLEYVRDKLWLSDVAGNFALGGLTDAQTRASMRRFMEKVVPKVR
Ga0208419_1017077	Ga0208419_10170772	F008960	QKVSLECVLRLLFERSGACLETASEIVYWVNAMGLSQSYRRLLEEVSDGLCAMDLRAQGKPIRIVLKERPP
Ga0208419_1018575	Ga0208419_10185751	F006956	FEGATSPSFVFTIQDSGPDGVSEADVDVLDNALGYVLNQGATVHFSTDNKKAYAFFLNYAVVTFAGLLTGGDARAFFDHLGTIDEALWSGQFAGFTQIDFEGSSTNNSMLFLQPAVSKHRFISGLSEAASTDTRATYSPLKVNGKPTTSAAGVTFPGNDWLAFPDGDGYLVNVGDSSQLLSELAVLRQQHLTAAANLLTAIDGGNVETYLSSQFSCPN
Ga0208419_1019715	Ga0208419_10197151	F064019	YFSFVLVLALVAPLWLAAAYASASSFQARFRDALIWSAVLLSLWLLITRRRGFHVRGTWRKPQPREMKIYLRLILAMLLVDFGSKALFFRWDRPHQVELIKNFGLHSVFHETPFEPFHLILLIYFAYMFILGGLFFRFDNTVLDRVWLVSCTFALGGGIALFGERYLFGGVHNSFYFAGPLMWICPPCASPRFSSYAWTPADFFVYAAFLPLLILLVSYFVPSRAPAKAAH
Ga0208419_1020905	Ga0208419_10209051	F057190	MSENNGKKALHVATFSGWYRFEQQGKEFRQTKRDLTYWTLTCMSVDPANPQKVFVGSEHSGLFFSENGGARWKRAEPNTPKMMLFSALAVNGGVMVGTIPSAVYRSKNGGWEELEGVRQHSAGANFPPSPE
Ga0208419_1021135	Ga0208419_10211351	F106139	MLLCRCAWHRRYRGYPLVSGVVSWRGFSVRFTDGICRGCLERFRAEHERFLS
Ga0208419_1023180	Ga0208419_10231802	F018782	LAAACGVDLPRLAYADLLGLPHAPAVMNGGGKRWAITLLAGERPTLQRPPYVDAVFARDDLRPAAVHAARVVRSLVR
Ga0208419_1023961	Ga0208419_10239611	F046616	EAAGVAALLAGKIADLEGATVAVVVSGGNVSARMASDILASHEA
Ga0208419_1024678	Ga0208419_10246781	F021644	VSTARLQLAVAGGTLFPPRAPFSWEMWGTSRFPTP
Ga0208419_1025475	Ga0208419_10254751	F001884	RNGEVVRQAIELGELVHLETASEELTDAFLLFAIESGLAKQWAEAFPDPRAEPEIGMEVILSAHLAGRFAGLYSLRKTGYVLRSARVLGALGYSVEVVEPEHGLSLRGTSDDKLFSGDVVRKLLVKLEQQVDPRQPVPILAKEPSVAVKVRERASRRAVKQTVNEAEAELRALQVAEQLLGWYNQHVGVSMLKSARLGRGRRIHILDTTRVEVALETGTYECCGV
Ga0208419_1027458	Ga0208419_10274581	F010356	VDDEPRSLADEVRQSLSLIGMTALTLLASIAFGLVVGQLG
Ga0208419_1027920	Ga0208419_10279201	F006283	GVGSVGQYSAAEQEVEGHQRSVPIVGFRGSHVRVDAHAALAADAGVGDNPKTAATSLDANESEICGYFTGLARQRREACEVSLGRLQVDRKATAARIDLQQTKDAFARLLTAIEPSLEKLKSDHAAILYQAKENEGRALKHLRWFQQKHGLHHRAAAYPESQVYHFAIVAALALVEWVSLATFYAEGSDFGLLGGVLIAMGLSIVNISLAILAGS
Ga0208419_1029638	Ga0208419_10296382	F067494	MKYFDLYASYPDYTIAAAWESQIKEADRSPWLADTLTESGDELFARFAACYAELRALPRSARRALQRRIARS
Ga0208419_1029733	Ga0208419_10297332	F103866	ALSLNVDRDVQAAQLAVLRELGEYLGDRINNPLAVILASAQLLEMKAPGDATTEAAERIAGAVKKINAVVREIARRSGEVD
Ga0208419_1029770	Ga0208419_10297702	F054949	MRTATTDDQARKWFRRYWALGVGSGAHILVSGLLDVTREIAERQR
Ga0208419_1030448	Ga0208419_10304482	F088967	RVSNGLEPNYDNPYGLMAIMGVNIQVHLVAGVALVVAYVAVLVIHAVAPGVPLFLR
Ga0208419_1030499	Ga0208419_10304992	F005490	IGTYFIVVGWIFVIYALIAAVLWWIDLAQREAFNILEALAISLSQVGLPFFFAVLVLGLGYTMRLFALYVASKVA
Ga0208419_1031653	Ga0208419_10316531	F036220	IEAEDPEAAAALHRWLAGTLAERLDDTMRGFDALID
Ga0208419_1031843	Ga0208419_10318431	F024738	MNNKTLTIAVVAAVAAMLIATSAVATEDAFAGKKKXYEKNQATSQANACGNGKLPFNVGCQNTASQIQGDENAVSQAAEQVFP
Ga0208419_1032044	Ga0208419_10320441	F055239	EIMNAAGGERPGGNEGATAKLSIEYAGYVKPGPARTPIVKFSETAMERAKKKAEGWKKLCDKYRPLVEAERSKVRAAS
Ga0208419_1032338	Ga0208419_10323381	F007188	VALRTLGDSPARSLSALAQRLGVSEADAVSLVESLEEAPPPVEPISSRDAAGEASPLLPMTAPRDASCAPKTLLNRPIVIAARKKTTR
Ga0208419_1033045	Ga0208419_10330452	F074066	KKHGKADRATIRTALTEVDVKDSPLGPIKFDANHQAWINMILIEIRDGQLRILEKLPTSPALLN
Ga0208419_1033563	Ga0208419_10335631	F017218	MKNGAGMETRDVAAVLIGLEVGLGIGLFAFGTTLLAPMGIALLGALAGFAVRRGRLQLIRRALRSQLRAAR
Ga0208419_1036697	Ga0208419_10366972	F001127	MEHHIEQYQSREGGVTLHTWTDVQGAKQENFYITGMPGNPIPGWFRKVLRQKHLADIADFPYTPSCFYA
Ga0208419_1037323	Ga0208419_10373232	F085279	EVPEQSVAERADLPGVDPRLVKAVGLRDDRPFILLDIDRLLETIVGG
Ga0208419_1038339	Ga0208419_10383392	F097647	VTAQRLPRIGDRVEVAFDEVEAFLDSPGGRRLRRLLAGGLIVTAPLLFRIPGLRRYPLVRTLELIGGAALVVKFAESLRDWEPARRATVVVDVPPASARS
Ga0208419_1041696	Ga0208419_10416962	F047517	VLRTLLQRPLLVGTTEVLVDAVRYVAIVLVVLLLVGQLAKVAL
Ga0208419_1042919	Ga0208419_10429191	F078917	NVGRDPGAREELMAIGLTSLPVILIGDHKLAGFNPKKIDEALAAQGS
Ga0208419_1043453	Ga0208419_10434531	F105834	AGEVSAATRQTLLKQVDQADPITKVVGLILGTPEFQRQ
Ga0208419_1044395	Ga0208419_10443951	F065866	NGRAVAALADELRDVDRQRALEDGLRDLRQDSTGLPHVSEAVRALLAAPDIAWRAYAASLLVEDLEGDDE
Ga0208419_1044417	Ga0208419_10444171	F057184	MPLIYTSATIMAILIVLTGTISIIVINTEAQNQTILNQSGTEKIDLNVQGVSAFVPEGRDIYTITGEVLNNNTFPFNSVQVSTTLYDNNSQVVGVGSGYTSPSGIQPGLKAPFKIDIFGGEIRG
Ga0208419_1044424	Ga0208419_10444241	F001667	MLSEMNTKYMVIVAAMAVMLIGATALATEDAFAGKKKHKEYNQATSQANACGNGFLPENVFCQNIGSQIQGDENAVAASGAQ
Ga0208419_1044928	Ga0208419_10449281	F037405	VTLDDWILALHVLSAFAFVGAVVLFWVLIVAGWNVDLPEDTLRVERLVKVGNAAVAVGAGGTIVLGIWLAFS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300026032: Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailA_D1 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences