Sample 3300025987

3300025987: Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_203 (SPAdes)

Overview

Basic Information
IMG/M Taxon OID	3300025987 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0116036 \| Ga0208906
Sample Name	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_203 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	61703542
Sequencing Scaffolds	47
Novel Protein Genes	50
Associated Families	48

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6
All Organisms → cellular organisms → Bacteria	10
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	terrestrial biome → paddy field → paddy field soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: Twitchell Island, California
Coordinates	Lat. (^o)	38.1087	Long. (^o)	-121.653	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000209	Metagenome / Metatranscriptome	1592	Y
F000776	Metagenome / Metatranscriptome	895	Y
F001212	Metagenome / Metatranscriptome	746	Y
F001519	Metagenome / Metatranscriptome	679	Y
F001743	Metagenome / Metatranscriptome	643	Y
F002388	Metagenome / Metatranscriptome	565	Y
F002581	Metagenome / Metatranscriptome	546	Y
F003606	Metagenome / Metatranscriptome	477	Y
F003632	Metagenome / Metatranscriptome	476	Y
F003716	Metagenome / Metatranscriptome	472	Y
F003735	Metagenome / Metatranscriptome	471	Y
F003762	Metagenome / Metatranscriptome	470	Y
F003972	Metagenome / Metatranscriptome	459	Y
F006036	Metagenome / Metatranscriptome	383	Y
F008043	Metagenome / Metatranscriptome	340	Y
F008466	Metagenome / Metatranscriptome	333	Y
F009432	Metagenome / Metatranscriptome	318	Y
F009704	Metagenome / Metatranscriptome	314	Y
F011615	Metagenome / Metatranscriptome	289	Y
F012224	Metagenome / Metatranscriptome	282	N
F015383	Metagenome / Metatranscriptome	255	Y
F020234	Metagenome / Metatranscriptome	225	Y
F021751	Metagenome / Metatranscriptome	217	Y
F021852	Metagenome / Metatranscriptome	217	Y
F022919	Metagenome / Metatranscriptome	212	Y
F031210	Metagenome / Metatranscriptome	183	Y
F033546	Metagenome / Metatranscriptome	177	Y
F041175	Metagenome / Metatranscriptome	160	Y
F041464	Metagenome / Metatranscriptome	160	Y
F045771	Metagenome	152	Y
F050531	Metagenome / Metatranscriptome	145	Y
F058369	Metagenome / Metatranscriptome	135	Y
F064021	Metagenome	129	Y
F065625	Metagenome / Metatranscriptome	127	Y
F067487	Metagenome / Metatranscriptome	125	Y
F072177	Metagenome	121	Y
F073448	Metagenome / Metatranscriptome	120	Y
F073744	Metagenome / Metatranscriptome	120	Y
F076192	Metagenome	118	Y
F081613	Metagenome / Metatranscriptome	114	Y
F084554	Metagenome / Metatranscriptome	112	Y
F084657	Metagenome	112	Y
F086923	Metagenome	110	N
F088142	Metagenome	109	Y
F090660	Metagenome / Metatranscriptome	108	Y
F093160	Metagenome / Metatranscriptome	106	Y
F094439	Metagenome	106	Y
F104089	Metagenome / Metatranscriptome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208906_1000068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4923	Open in IMG/M
Ga0208906_1000085	All Organisms → cellular organisms → Bacteria	4608	Open in IMG/M
Ga0208906_1000095	All Organisms → cellular organisms → Bacteria	4482	Open in IMG/M
Ga0208906_1000171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3652	Open in IMG/M
Ga0208906_1000173	All Organisms → cellular organisms → Bacteria	3641	Open in IMG/M
Ga0208906_1000347	All Organisms → cellular organisms → Bacteria	2817	Open in IMG/M
Ga0208906_1000423	All Organisms → cellular organisms → Bacteria	2667	Open in IMG/M
Ga0208906_1000676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2222	Open in IMG/M
Ga0208906_1000827	All Organisms → cellular organisms → Bacteria	2035	Open in IMG/M
Ga0208906_1000971	All Organisms → cellular organisms → Bacteria	1902	Open in IMG/M
Ga0208906_1001370	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1669	Open in IMG/M
Ga0208906_1001609	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1562	Open in IMG/M
Ga0208906_1001658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1543	Open in IMG/M
Ga0208906_1001707	All Organisms → cellular organisms → Bacteria	1521	Open in IMG/M
Ga0208906_1001772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1499	Open in IMG/M
Ga0208906_1001915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1454	Open in IMG/M
Ga0208906_1002995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1210	Open in IMG/M
Ga0208906_1003312	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1165	Open in IMG/M
Ga0208906_1003750	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1108	Open in IMG/M
Ga0208906_1003926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1088	Open in IMG/M
Ga0208906_1003965	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Bryobacter → Bryobacter aggregatus	1083	Open in IMG/M
Ga0208906_1004750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1008	Open in IMG/M
Ga0208906_1006045	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
Ga0208906_1009070	Not Available	784	Open in IMG/M
Ga0208906_1009423	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
Ga0208906_1009589	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	768	Open in IMG/M
Ga0208906_1010513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
Ga0208906_1010558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
Ga0208906_1011401	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	718	Open in IMG/M
Ga0208906_1011499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	715	Open in IMG/M
Ga0208906_1012245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	697	Open in IMG/M
Ga0208906_1012948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	682	Open in IMG/M
Ga0208906_1015741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	632	Open in IMG/M
Ga0208906_1016318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	622	Open in IMG/M
Ga0208906_1016441	Not Available	621	Open in IMG/M
Ga0208906_1018046	Not Available	597	Open in IMG/M
Ga0208906_1021012	Not Available	562	Open in IMG/M
Ga0208906_1021577	Not Available	557	Open in IMG/M
Ga0208906_1023480	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	538	Open in IMG/M
Ga0208906_1023501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
Ga0208906_1023879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534	Open in IMG/M
Ga0208906_1024727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	527	Open in IMG/M
Ga0208906_1024739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	526	Open in IMG/M
Ga0208906_1025556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	520	Open in IMG/M
Ga0208906_1026116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	515	Open in IMG/M
Ga0208906_1026724	Not Available	511	Open in IMG/M
Ga0208906_1026813	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208906_1000068	Ga0208906_10000687	F002581	VRRRLLTLAGFVTGAFAGSVVYRRSLGRRRDRLDVYFDDGSMVSLVEGSPEADRLLPVARELLAAARG
Ga0208906_1000085	Ga0208906_10000853	F003632	MSEREQGATVVELLLREPEIVAWLGDERPDPAGADEDDPPEAA
Ga0208906_1000095	Ga0208906_10000951	F065625	GPPSLEGWRERHRGLHPHRPLLDALRARYEERELVWLPYLHRWLGGPASESLEESLTGAGAFPAIGWRWAGVRRADPANG
Ga0208906_1000171	Ga0208906_10001716	F041464	GYVPAEVAPELRGDEQAVALWEFRGDGGRRVGLRVLLAPAEAWIQEPRS
Ga0208906_1000173	Ga0208906_10001735	F003972	MTIDPHTAVLAVTTLGVGWLMATAGLQKSALERRRRRRICPSCGREVRARVCTSCSG
Ga0208906_1000347	Ga0208906_10003472	F003762	MDWRDLTDTLNAACERPAEGETAERAVRAAELVAATAGEPPDDLSAEEREWAETHGVPPEDLLELACRSMKCVAGLSDDWHERLNDLRYRLGDVAAP
Ga0208906_1000423	Ga0208906_10004234	F001743	VIEVACAACGWLAITNQPAHLVWAEHESACPAVGGAVRHMPELPPLPKLLPEVRACRHRPVRRQIAVTPSGAKRYAVVCELCGRHVGGD
Ga0208906_1000676	Ga0208906_10006765	F067487	VRATYEVRPPEWAETLAILQSVSLADGPAGVRARVVAADGARVTIEFPSLAEERDPAQLLAACVAGEWADRGDFESCRLVGVEWPEGLPGPAFGAEPGIA
Ga0208906_1000827	Ga0208906_10008272	F006036	MAGIPPALAASATPRVLELLGEPPGRVLELGFAGIHARPLELAGWEVVVVEPDPAFAARARERSDAVAERPEGRFDAVVAPAGADLSGVDAARVVLVQADGTASMAG
Ga0208906_1000971	Ga0208906_10009712	F003735	MDEPSIALRVRDHDEPALDVRVNFGVFAGRHATPAEIDGLAGALRDLLASFAIVSEERHEFGRGVEASIHQVVIEVPREHAGDDPDVLAERIVLAANGWAIDCIASRHGGGEL
Ga0208906_1001370	Ga0208906_10013703	F003606	VRPRSANEWRDFWRDGGERALHAQLDEFAPYSVRIATLLGSNAPLRALVAELGRIRAHELGTEPAPARDAEVAQRVHDWFLGSSHVRD
Ga0208906_1001609	Ga0208906_10016093	F012224	MIQVTCVGGECNGVTVRVEPQPTYYEVVDPRDKSRRDYYMLELAQGGARLVPESTADWRARF
Ga0208906_1001658	Ga0208906_10016582	F000776	MRRDALDAFLDQKVAEGYVIETRTDTHAIVSRRPKGLKRFTSGPDPGRYVVEVDESGCATMRPAEPRRA
Ga0208906_1001707	Ga0208906_10017072	F008043	DRRTTTQQAVVEAITAGVPTKVSGISAAPAAGGGG
Ga0208906_1001772	Ga0208906_10017722	F031210	LSYEDALFMSQGGYAAYKAANIPYQGVFTYRTDEAGMGCLADKLKDPKLQIYYYTAGNAQIRVALTADMMKLAGAKIPPTIVFPIQLQQQTKRDMCLKGYPSTASGTSLIPLSLLHQMYP
Ga0208906_1001915	Ga0208906_10019152	F058369	MTIDLHIATLALLTLAIGWVMMVAGVQKSALEWRRRRRICPSCGREIHARVCTTCAG
Ga0208906_1002995	Ga0208906_10029952	F020234	LKPLAFVIFQLLVLAWILVAHLRRDPSLVYRFLWLGAFGGAIGLDVWYLNSFAYPGGFSF
Ga0208906_1003312	Ga0208906_10033121	F009704	EAQGAFDRDDVLAVLRERVEEGYHVTVDRCIGVGDRVVVSMRFSRVEPDETDERLLQSRRYYLVGRYAAVVTTREGRVARVEEHPHLDAALEAAGLEDQ
Ga0208906_1003750	Ga0208906_10037502	F033546	VTRLLALALLALVLAACGGGSSSAPKEGVGVFMTRILREEINGQWSRQWTELHPGHQKLITQAEYVACSRGIGTDIGTGKKEIFRVLAVHDEAIHVQGVPETTSKVVTIAFRVGGLTPLTYRLHAVADGGRWTWILGGRFLAQIDRGRCLDGAPLGKGSA
Ga0208906_1003926	Ga0208906_10039261	F003716	MRTKLFLVTVLVALAAAGAAFAGNGNGKRHAHTIHYAFVGKLTAVPGNGGVSITVEGGNHAALRAMLGQPVTQTFAYGDGTEFLQWSHGAPTVVQPGNLAAGDYVRVNVRAARGSSLSDVEQQDATIVGDHGTELYTAAQPLYLFRGRLASVGSAGVTVDVRGGNRHALRLLVGQSSTQTFATGDQTIFLLWQGRVPSVIALSQLKVGDRIVVRVRAARGSTLAQVESTPAVHVGDREPANASS
Ga0208906_1003965	Ga0208906_10039651	F011615	MDGNFIGFAAVVMSLGIPIAALYTYFRVRRLHTEERLAAIARGVA
Ga0208906_1004750	Ga0208906_10047502	F021751	MIGVGIAFVIVGIVFLFIIPWVGIPVGIVGIVLAVLWLAGFGRRAARGEQPAERRF
Ga0208906_1006045	Ga0208906_10060452	F084657	MAVKKTERISVWLTADQIAWLKTKGKNTSETVRAVVTEAMNLDRLAQSVRRRKRK
Ga0208906_1009070	Ga0208906_10090701	F073448	PERVRGARIAFLREVTDSETARAVLIEMVQQARQR
Ga0208906_1009423	Ga0208906_10094232	F072177	MERKMFWVIFTVLSLFGYFLPFVWAIVEMFVALIVSWWIVYRSDWI
Ga0208906_1009589	Ga0208906_10095892	F001743	VIKISCEACGWVAITSQPVNDVWREHEAGCPALGGAVRHLPDLPPLRRLLPPVSLCRHRPVRRQIAVTPAGAKKYAVMCELCGRLVG
Ga0208906_1010513	Ga0208906_10105132	F001519	AGACSRGVATMTLVNSLCAEISIFDGVGESTGVVVERSAIRGKRGLCKSMRDLAIKSRVLGDGYYYIPIDLWPKSKEPVVVHKHDWTVISSIPRTSRSARNKKRERQA
Ga0208906_1010558	Ga0208906_10105582	F094439	DTHSLGLKLKVIRARARQLAPSHRDIESSGVPPEQYILVQCVREELRLNPSEAMHWYRKVRLMIQDPATRTAAPAIADHPDALAVWEYLDRSVDPSIIGRTFALPPR
Ga0208906_1011401	Ga0208906_10114012	F031210	GVFTYRTDEAALGCLAKKLKNPKLKIYYYSSSNPQIRVALTADMMKLKHAKIPKTIVFPIKLQNQATRSMCIKGYPSQASASSLIPLKLLHRMYP
Ga0208906_1011499	Ga0208906_10114991	F021852	MTDFEDRVRRMAREAMGEIGRSADEIADVVEPPGADYCVITFAGESVKPIEIPKPLGAGESQELDEIRRALQYRFGT
Ga0208906_1012245	Ga0208906_10122451	F001212	MFDECIRCNSAPAVDDLGYCGHCHWAVRAEVEEGFYQLREYLRPWARFSEWCEARGLLAR
Ga0208906_1012948	Ga0208906_10129482	F009432	MSARDDRVVHRQEVDDLLSRIDAQRRQQLLLEAAGAYAPGLEREVERTRQQLAELVR
Ga0208906_1015741	Ga0208906_10157411	F084554	KKAIVLLAVALAIPTSVALAKGPGTHGKSNPRVMYVLKGTLSSYTAATADTPGSISITINHSNYHGRALKGLTLPFPTTMQTRVTFRHGATQITDGAKGMLKFKAPLHRKGDTTLVTTLTTGARALHIIVQSGH
Ga0208906_1016318	Ga0208906_10163181	F041175	MTGLSVSVKKQGSGIAVTAGVAGQPGRQSHVYATGARVYVIEASMGDDSNNSDYSLGDDGLVVTDSKGRIVQ
Ga0208906_1016441	Ga0208906_10164411	F093160	CYLKDDEAEEADKMAVDGSGNVYVIDDRYRVAKINGSTDKVDKVLAIPGYACEEEVPDGSTQVFPNMANNIAMMAKSGGSKLYVTSEQNTLSLIDPATMTIKATINIPNAGELDAIATDPGLNQVYITDEEKAVMWILKGACANGTGQCVVKE
Ga0208906_1018046	Ga0208906_10180462	F088142	VVEEFLNSLTELGFDDPVRSVYFFWVDRYIIEKKELEKETLEKFVRGMVDGKFINHCEIYDFSQEQYILVCKFTLNLYEIVFFLPSREGYLSGKKYFMRIKGKLDLVSLRKLFKIFRLKLFTFTY
Ga0208906_1019579	Ga0208906_10195791	F076192	LRFLRKHRVALLALLVYHIVFFFPTLFMARVVSPNDVFFNYDPWASTRSVDVQNSLMNDPATAYFPLISLVKGDWHAFHWDPFIASGISGFGSSSDAVLSPFVFFPALILPLAWVFTGIILLKLEAAFFFTYLWLREERLGKGAAAVGAILFAASGAIAVRWLWQTTNAA
Ga0208906_1021012	Ga0208906_10210121	F081613	MAIFRFMVIDEDGQRIGRFETHDAGWRAGDIFALDERRWLIVEILPEVSTMVAYNAVWVAAPAIDEDAQAAPHGRPDPDGIHRARV
Ga0208906_1021577	Ga0208906_10215772	F073744	MPADVIAQLIHSADERIPVDDLVLGLDWLRYAAKTLLA
Ga0208906_1023460	Ga0208906_10234602	F050531	VRPLPQKLDLALVKRLRQVVAGEVATEAELRALDDEAGGWVRATEAQLHAAERRLTELNADPASPLAEIAAEVRSVEALSR
Ga0208906_1023480	Ga0208906_10234801	F045771	MTRRIFLDTEWTKPPWSMQSELMWIGLADEDGRSWYGISSEVDINPSTNDFISGVFRLITPDEPRLTNEKIAASVIDFCGDVDEFWAWIPTMERFAEGFRLGEEAAELYAKYWDIDLQMVRSLVQPWPDGWPDRLLDLNAA
Ga0208906_1023501	Ga0208906_10235011	F064021	LAGCTSVMNTALPPGRMSEAGTIRPCHRDHRDAQACGNAIFNDGVIAQIHTGQTLTDVRAIMRHEAERRTADGSNESWGYITNYKDKVMTWIAFTDRKVSSITQQPWFRD
Ga0208906_1023879	Ga0208906_10238792	F022919	VVHASEASNRYHHLDHAGHFFLGVMLGLLLGSLPAVSRRLGERPTLGLTAVIAAPTLMMLVMVPRFYEPLERHPFEHALFHLAMAAIGLVTGVGATRLGRVTGRLAAFLAVGMAVMFAAAMT
Ga0208906_1024727	Ga0208906_10247271	F008466	MQEEMIEIDLAGTVVAVPRGVVSDLAAAAAARAGVSGRHRDLSLHLGRALESGRVSLGPGEVRALVAVLEEEHSDRFGPAAAELRRAVA
Ga0208906_1024739	Ga0208906_10247391	F002388	ALRSAIVNVANHYLHLAASRSPAQMESLIWQHVSTDGTDHGPSCAAFASLTLALAAQVVGQQSWVTGGSSYPWPLHTWADVRVDPGAAPDGVLSLLQDAQAHQRWHALGDGYQPRPGDWVLFDGHVEVVTRYVHGALHTIGGDSLPDFSVNAHVYRGPLAADGVVGFVNNGALS
Ga0208906_1025556	Ga0208906_10255561	F104089	MSSPQELYPLVLLWVQGIDGLGHATALASLAHLVTALLVGQSLRPTALMRALLSSSPVPARQRYKRVERAWTRRWLSPAWLTPRLVRAALALVASDALGRPSAGLTHLALDSVRCGRWEIFTLGVVWHGR
Ga0208906_1026116	Ga0208906_10261162	F015383	MRLLSNRKIQLVLNGGLGLVLLAVAFVSVRHFVGGGWPIHHADPVLVSGAALLFLAAYAFKAWGWQRLFHASERPTADALAF
Ga0208906_1026411	Ga0208906_10264111	F000209	RTDRVTLVLVGMGVIFASLGLGEAVYRLAFLDFDGATDRFPIEMLFGLALAWVATKLVKRICQYRIETSARMKLIRDRNYKIRHAAEAIAPLSFPSNQQAIRVIREEVNRIEWALSDLLP
Ga0208906_1026724	Ga0208906_10267243	F090660	MATVAPAAEGKMQQSEPKVDRRPQRARVDEKFKIFCGTANPQLAE
Ga0208906_1026813	Ga0208906_10268131	F086923	EELADALEGVGFLDAPIFEDGPLPLQQQVVDKLADMMFASDMVLDLFRDERYSVPPHLLAVEPEVQRLYDDINTLMKRLAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025987: Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_203 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences