Sample 3300025964

Overview

Basic Information
IMG/M Taxon OID	3300025964 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101378 \| Ga0210127
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	86980674
Sequencing Scaffolds	72
Novel Protein Genes	73
Associated Families	64

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	12
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Solidesulfovibrio → Solidesulfovibrio magneticus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	5
All Organisms → cellular organisms → Bacteria	11
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1
Not Available	13
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Cognataquiflexum → Cognataquiflexum rubidum	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 37-65-8	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum → Herbaspirillum chlorophenolicum	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.224518	Long. (^o)	-122.019257	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000769	Metagenome / Metatranscriptome	898	Y
F001196	Metagenome / Metatranscriptome	749	Y
F007558	Metagenome / Metatranscriptome	349	Y
F013223	Metagenome / Metatranscriptome	273	Y
F016165	Metagenome / Metatranscriptome	249	Y
F019156	Metagenome / Metatranscriptome	231	Y
F021129	Metagenome	220	Y
F021329	Metagenome / Metatranscriptome	219	Y
F021563	Metagenome / Metatranscriptome	218	Y
F021565	Metagenome / Metatranscriptome	218	Y
F021566	Metagenome / Metatranscriptome	218	Y
F022094	Metagenome / Metatranscriptome	216	Y
F022216	Metagenome / Metatranscriptome	215	Y
F023288	Metagenome	210	Y
F023374	Metagenome	210	Y
F023894	Metagenome / Metatranscriptome	208	Y
F023896	Metagenome / Metatranscriptome	208	Y
F028853	Metagenome / Metatranscriptome	190	Y
F029036	Metagenome	189	N
F029147	Metagenome / Metatranscriptome	189	Y
F030143	Metagenome / Metatranscriptome	186	Y
F030487	Metagenome / Metatranscriptome	185	Y
F031548	Metagenome / Metatranscriptome	182	Y
F033859	Metagenome / Metatranscriptome	176	Y
F036303	Metagenome / Metatranscriptome	170	Y
F037274	Metagenome / Metatranscriptome	168	Y
F037275	Metagenome	168	Y
F040164	Metagenome / Metatranscriptome	162	Y
F041508	Metagenome / Metatranscriptome	160	Y
F046091	Metagenome	152	Y
F046145	Metagenome	151	Y
F048393	Metagenome / Metatranscriptome	148	Y
F048602	Metagenome / Metatranscriptome	148	Y
F049078	Metagenome / Metatranscriptome	147	Y
F052012	Metagenome	143	Y
F052015	Metagenome / Metatranscriptome	143	Y
F054139	Metagenome	140	N
F054144	Metagenome	140	Y
F056185	Metagenome	138	Y
F059392	Metagenome / Metatranscriptome	134	Y
F060098	Metagenome / Metatranscriptome	133	Y
F061085	Metagenome / Metatranscriptome	132	Y
F065171	Metagenome / Metatranscriptome	128	Y
F067890	Metagenome	125	Y
F069004	Metagenome / Metatranscriptome	124	N
F071371	Metagenome / Metatranscriptome	122	Y
F071793	Metagenome / Metatranscriptome	122	Y
F072476	Metagenome	121	Y
F072483	Metagenome	121	Y
F072484	Metagenome	121	Y
F072487	Metagenome / Metatranscriptome	121	Y
F073725	Metagenome / Metatranscriptome	120	N
F074182	Metagenome	120	Y
F077981	Metagenome / Metatranscriptome	117	N
F078294	Metagenome	116	Y
F078884	Metagenome	116	Y
F081508	Metagenome / Metatranscriptome	114	Y
F085853	Metagenome / Metatranscriptome	111	Y
F087402	Metagenome / Metatranscriptome	110	Y
F090576	Metagenome	108	N
F094058	Metagenome / Metatranscriptome	106	N
F097618	Metagenome / Metatranscriptome	104	N
F102135	Metagenome / Metatranscriptome	102	Y
F105124	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210127_1000039	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	15111	Open in IMG/M
Ga0210127_1000129	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	10683	Open in IMG/M
Ga0210127_1000158	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Solidesulfovibrio → Solidesulfovibrio magneticus	9760	Open in IMG/M
Ga0210127_1000333	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	6705	Open in IMG/M
Ga0210127_1000399	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5944	Open in IMG/M
Ga0210127_1000930	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3601	Open in IMG/M
Ga0210127_1001827	All Organisms → cellular organisms → Bacteria → Proteobacteria	2437	Open in IMG/M
Ga0210127_1002160	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2238	Open in IMG/M
Ga0210127_1002272	All Organisms → cellular organisms → Bacteria	2175	Open in IMG/M
Ga0210127_1002425	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2109	Open in IMG/M
Ga0210127_1002827	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1956	Open in IMG/M
Ga0210127_1003157	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1849	Open in IMG/M
Ga0210127_1003330	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1800	Open in IMG/M
Ga0210127_1003428	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1775	Open in IMG/M
Ga0210127_1003443	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	1771	Open in IMG/M
Ga0210127_1003489	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1761	Open in IMG/M
Ga0210127_1004312	All Organisms → cellular organisms → Bacteria	1582	Open in IMG/M
Ga0210127_1004444	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium	1556	Open in IMG/M
Ga0210127_1004813	All Organisms → cellular organisms → Bacteria → Proteobacteria	1497	Open in IMG/M
Ga0210127_1005016	Not Available	1467	Open in IMG/M
Ga0210127_1005330	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1423	Open in IMG/M
Ga0210127_1005428	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
Ga0210127_1005939	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
Ga0210127_1007020	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1258	Open in IMG/M
Ga0210127_1007255	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1238	Open in IMG/M
Ga0210127_1007834	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1194	Open in IMG/M
Ga0210127_1011601	Not Available	987	Open in IMG/M
Ga0210127_1011673	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	985	Open in IMG/M
Ga0210127_1013860	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	909	Open in IMG/M
Ga0210127_1014645	All Organisms → cellular organisms → Bacteria → Proteobacteria	887	Open in IMG/M
Ga0210127_1015339	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	869	Open in IMG/M
Ga0210127_1015480	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
Ga0210127_1015867	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Cyclobacteriaceae → Cognataquiflexum → Cognataquiflexum rubidum	857	Open in IMG/M
Ga0210127_1019033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	790	Open in IMG/M
Ga0210127_1019585	All Organisms → cellular organisms → Bacteria → Proteobacteria	781	Open in IMG/M
Ga0210127_1019699	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	778	Open in IMG/M
Ga0210127_1019803	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
Ga0210127_1021470	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
Ga0210127_1021612	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
Ga0210127_1021640	Not Available	746	Open in IMG/M
Ga0210127_1021641	Not Available	746	Open in IMG/M
Ga0210127_1022204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	737	Open in IMG/M
Ga0210127_1022688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	730	Open in IMG/M
Ga0210127_1022750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	729	Open in IMG/M
Ga0210127_1023239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	722	Open in IMG/M
Ga0210127_1023847	Not Available	714	Open in IMG/M
Ga0210127_1024315	Not Available	708	Open in IMG/M
Ga0210127_1028003	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	664	Open in IMG/M
Ga0210127_1028783	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	656	Open in IMG/M
Ga0210127_1029067	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	653	Open in IMG/M
Ga0210127_1029553	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
Ga0210127_1029916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → unclassified Burkholderiaceae → Burkholderiaceae bacterium	644	Open in IMG/M
Ga0210127_1029982	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium 37-65-8	644	Open in IMG/M
Ga0210127_1030610	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
Ga0210127_1031657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herbaspirillum → Herbaspirillum chlorophenolicum	628	Open in IMG/M
Ga0210127_1032780	Not Available	619	Open in IMG/M
Ga0210127_1032799	Not Available	619	Open in IMG/M
Ga0210127_1033088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	616	Open in IMG/M
Ga0210127_1033905	Not Available	610	Open in IMG/M
Ga0210127_1034246	Not Available	607	Open in IMG/M
Ga0210127_1034688	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfuromonadales → Geobacteraceae → unclassified Geobacteraceae → Geobacteraceae bacterium	603	Open in IMG/M
Ga0210127_1036762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7	588	Open in IMG/M
Ga0210127_1036967	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	586	Open in IMG/M
Ga0210127_1039396	Not Available	569	Open in IMG/M
Ga0210127_1039971	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Desulfobacca → Desulfobacca acetoxidans	566	Open in IMG/M
Ga0210127_1041065	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	559	Open in IMG/M
Ga0210127_1041916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
Ga0210127_1041933	Not Available	553	Open in IMG/M
Ga0210127_1045795	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
Ga0210127_1046406	Not Available	527	Open in IMG/M
Ga0210127_1047273	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	523	Open in IMG/M
Ga0210127_1050545	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	506	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210127_1000039	Ga0210127_10000392	F046145	VCLNFYWKLFEWITARYEKTIPDWLECDHMVLKPKPFSEAKTGFFITNRYLRVLSEKI
Ga0210127_1000129	Ga0210127_100012914	F073725	MEKRVARRHRIDSSIVCSHLNSVGFGEPVDGRMKNCCVNGLYAELQSRFKTGTVLVVRSTGSSCGFSGDEGFRSLAVAEVKWTESKSVEGGICYATGLKYLMI
Ga0210127_1000158	Ga0210127_10001586	F052015	MHRLDTTEIYMIKKSAEGFIVSFRRGTDHGVRPGMQLAVLNEDGFRVGVVEVLASTEAESEALVSGESGIKLGCLVSIPAV
Ga0210127_1000333	Ga0210127_10003339	F007558	MQTIAEIKMLLLEILESAFQSGDVNATQQMGVNMTNAVKREGVVIIQNQNVEVYARIMPLMVKTLKLCDAVESSWRGQASIELEPQQKQLPPPADDDDPDPIEACCSWLYDNHIQWQDMQDLMKARYLAYVIGRFKTKTEAAKWLGVGSTYLCKLSKTTLHAVSQN
Ga0210127_1000399	Ga0210127_10003995	F046145	VCLNFYWKLFERITARYEKTIPDWFECDHAALKSKPFSEAKTSFFIKSRYLR
Ga0210127_1000930	Ga0210127_10009302	F023894	MEHGNHGNGKIGWVFGILVIAGALMLLACDQPSGQSDLSKKAPPSLGAIANVDGSDDEKKDDKKPQAGSEQAPAQSPAGGQPAQAAPKQ
Ga0210127_1001385	Ga0210127_10013853	F085853	GPVVPLPEGLKPVQESCGSPSDKDPWMECRLRQYMEARAAQYQKILANEIAAPLEKLNIKEFDQWKAELQAGMKKYAERFRSEMTTNPSFWRNFNQKAPIYQSMIEGVHRFWSDHQFEEIGRRMEQAAAASQAEVEQLNQKKEQIQKGKEGLNNALKNIKTRFGKLGLEAEDAILLAPIAFAALFLFAALNLCQNIQLRKSFHRLFQARDPQKVAITDSEIALAMPLWVDPLAPPIQRRLKLAVMMIPAIASVLALAVVFYCWTIPDAFPGLTGMDYVKYILYYLLSAGLFFFGFQRIRDAVKNYGV
Ga0210127_1001827	Ga0210127_10018273	F023288	AFFSWVAEAEGFAVPRPGRVAIRTGGGDIPFAFKFRRGERVLFFVREEDPERGGWSDVYTVLDRPKGTDGFEPFSCLPPATPPSGWSLRGRVPVDDLRFEHHERSTYVTRGSLERSLSAAGV
Ga0210127_1002160	Ga0210127_10021602	F037274	MRIYAVYRLGYWNNKLELLGKVVERRKEERKNNTADMLRWAQKIYAASSIDSSIFIVKEGSSEGAIFGGA
Ga0210127_1002272	Ga0210127_10022724	F037275	METVQEVRIKLYIRTDKRTVEKDLGNLDELRWFMNDFFSSVAERRSSKKLLKYVGPERRMPLWGRSAQR
Ga0210127_1002425	Ga0210127_10024252	F073725	MEKRATRRYRISTSIVCSYLNSVDFGKPVDGRMRNCCVNGLYAELGTHYKAGTVLVVRTTGSSCGYSDEEGFRSLAVAEVKWSRPRSIEGGACYATGLKYLML
Ga0210127_1002827	Ga0210127_10028272	F033859	VIRALVFFAALLGMATASAQDISSPASEWRSYCQTYLDAVDGNAAASDLDVTYCLGVTKGLLNGLQIGSQIGALSFGSRIAVKYKLDADEVFKLFQTQDPARLMGICSPASSNAADHVKAVLAYLEKNPDDLKRPIGEVFFEGLQAAYPCP
Ga0210127_1003157	Ga0210127_10031573	F031548	MKTKIMKIFAIAALMIFVGAGVSMAGGWKEYGGKRGNAYGRYKDRHYNHYEYCAPRPVYVEHHYRPVVVERHVYHPPAVYQAPAPSGYFLGMSVVEQGMAFSFGMSGH
Ga0210127_1003330	Ga0210127_10033301	F036303	MRKSYFLILALVFVGSIPTIAFSEDVFAPVKNVYMNDGKTIECQMGWLDGARMICRKFGGNMTLPLQSVDFEKTFPKYAKVDGETVLLVHPGPRYQDENIVISNIRMVRMTGSQAKNSCVVVCEIMNRGYPCDVRVVVNALDAQGKILHQIDVPSESRLDTGEATILRRRLDGLGTGLENQLSSLKVTNVERRNVLESVIAGKNGDRTGTSQDKIRGNKIKALKEIFLRERP
Ga0210127_1003428	Ga0210127_10034281	F069004	AIQDRFFTLDVGIDDEELIMSLLAGLALYVRKGRSIKVRQSYVTFSGSQEIVTKFIFKPEQVGEWSKETRQILSALKKKR
Ga0210127_1003443	Ga0210127_10034434	F021563	MEDLKLLLIDRLKSQGMDPSLIPSFLKALTSIISSEPGIEPAQANLKLNSLGWNEVAIDYHCLQIAIACLDADTKDQRNMIIQTRILKDADPA
Ga0210127_1003489	Ga0210127_10034891	F046145	FYWKLFEWITDRYEKTIPDLLECDHMALKPKPCSEAKTGFFIMSRYLRVLSEKI
Ga0210127_1004312	Ga0210127_10043122	F041508	MTPCIELNSGQGWDLFCSDWREAFLISWSYGMGDPMAPSDSEGNSEGGGRARRIASREAKRAGITRP
Ga0210127_1004444	Ga0210127_10044441	F097618	MGEEKLEKRFEAMEVRCDVCRKTFPLSEEGKRCPECNIGRLWLMDKAA
Ga0210127_1004813	Ga0210127_10048131	F054139	MEMTWEVRGVRSRFFGSVTAADLLHHVREVCRHPDFSDLRFSMLDFRDATDAVDDVDLLEVRAELIGSQYTNPKVLVAAITTERKAIDHLTRFIGLGVLNRQIQIFSTPDAAMDWIAEQSTFLLH
Ga0210127_1005016	Ga0210127_10050162	F040164	MEVQFELDEADMVALARRHMEQSPAARRRYRTRWIGVSLGIGLMGVLLYAFLDLRAPAIYLGAFAAFFLVFYPYYYRWLVGRTMHKIVNARLNPEALAARTLRTTPEGLELVSAGSKTAKGWDRVSGIDVTPERTFVAIDGEYAIVLPRLRLGDETYHHLIETIRQLAKLS
Ga0210127_1005330	Ga0210127_10053302	F072484	MTISFMRLARALRENKLPQTYNHRKIGLVFFFTLSGVMLFANVYAANFLFFWKAATDPSVTAYGIYQRTGDSSYVMIDEVSVQDLDTPANPSYLVTGLIDGNTYWFAATSIASSGTESNFYNQTCITVNGQIIECTDNNENGTTVFISCFITAAGR
Ga0210127_1005428	Ga0210127_10054282	F102135	MCWTGLIVGIFFGAGLGIVVAGILFAVKRREAEDHSSETPIDHALMDEGEEVPDELPPLPKSETYFDRYPHS
Ga0210127_1005939	Ga0210127_10059392	F021563	MDHLKLLLIDRLKSQGMDPSLISSFLKALTSIISSESDIDPAQANLKLHALGWNEIAIDYHSLQIAIACLDADTK
Ga0210127_1007020	Ga0210127_10070202	F071793	MEKRNSNRHKTDQSIVCALFSSNGINETFDGKMVNYCDSGLYVELQTRFKDGTALLVRTTGGPSEPVPAKMEEGFRSISIVEVKWSRPLSANGAVCYGTGLKHLAV
Ga0210127_1007255	Ga0210127_10072551	F094058	ILAWLMYDATVVEHDPWFAFVVGFVIVVAIVCQLMPSLHASKVSPGEFPYDTIGD
Ga0210127_1007834	Ga0210127_10078341	F031548	VKNNILKIFVIAILMIFIGAGVSLADGWKDNGGKRGNAYGHYKQQEYKNYQHYSPPRPIYVEHHYRPVVVERHYYHEPVRYIAPAPSGYFFGMSVMEPGMAFSFGMSGH
Ga0210127_1011601	Ga0210127_10116012	F046091	MEVKLTPSFVLTDEHTKSRLHMPVLVNMRTNEAYNPSDLLEAYPAWGKLQAPDLVKRMVNGKSFSDQEKYFIERFTGKVFS
Ga0210127_1011673	Ga0210127_10116732	F072476	MTLPFSKTKKILIPDVPPLSARETEAGIVITGIGIFCAAVVIAAMLFVFLGA
Ga0210127_1013860	Ga0210127_10138602	F072487	MFPKEYKYILGVGFILFGFFALKFSEYQHPIYGYINLGKYHIYIGVAFVLIGVFYIAHVRSENKK
Ga0210127_1014645	Ga0210127_10146451	F016165	MLLKILSGVLGVAGLCWLALLFSSRAILVGERVEAAALHQQLVCTYFTGSGTMRKEYFYSSSGNFGRAACPRWETVPAAQ
Ga0210127_1015339	Ga0210127_10153391	F052012	GGQSRSIDRSASTGSVTGAVGGYANAWLTKRLVARGDFLYIKVTPGSSDASVTDWRLGANYYIFRNAGLGVQYKYNQYSYDRGVLVSKLGGEITYKGFQVFVSFLF
Ga0210127_1015480	Ga0210127_10154801	F105124	SYAFRAVQNGLVQHYALSMLIGLFLLIAAGRFILGLY
Ga0210127_1015867	Ga0210127_10158673	F054144	SSRLRYRLMLEKEYTVGRVSLVPYVNVEPYYDSRYDTVNRIRLIPGASVSWTRYAAIEGNLTYQHDSKSSATHTVALNVILHVFLDTSRTP
Ga0210127_1019033	Ga0210127_10190332	F022216	VNPQRSTAGPTDEQRRRIRRNAVVLGLLALGIYVAFIVSGVMGVRG
Ga0210127_1019585	Ga0210127_10195852	F087402	RRMARAKVVEYDYYQFLRILQRAGNAGQRIEKTDSRWGDYVRENKINEVAATAIARQKFENATPVIIAEGGETDGLYFFSKDDEACLRLTALE
Ga0210127_1019699	Ga0210127_10196992	F021329	MAGVPFEGKRVEVEIDTDTYKIRGTVFEPVGGKTGYHYRLSDLLNNRDQQFLVLTDVVAESLSDPQQKWKAPFISVNKNVVTMVRAIKE
Ga0210127_1019803	Ga0210127_10198031	F067890	PRKFLSTPSTMTLGAKILAIAAVLCLIVWGVFLATGAQPLFKSGSLQVIYGEHEDFFADAVVYQKAGSSTYYLLHLPRARSAYRWWAVDLNDMTIAVGEAPHSLGPRKYLLRRDQGGTKISDAAKMGDWFWHFDGGGAAFSGNGFTCSVRRTEKD
Ga0210127_1021470	Ga0210127_10214701	F059392	RFFNNRRDANQRHTVDLSVKRAMINRAWVPDGRGANGAAFCSPY
Ga0210127_1021612	Ga0210127_10216121	F028853	MSTVEPKGAVHWIDHYVVGTNDLPGWSYWALHATGLPIRPINGL
Ga0210127_1021640	Ga0210127_10216401	F022094	MPLPLFRLPPHLQRAWIAERLARPAPPAAVGLSDGF
Ga0210127_1021641	Ga0210127_10216411	F001196	MSRLPLSAIGAGVLSTLLAGLATAGPVGDQYRGGAFGLPWNAGKSAIEAKYPGGNWAQDGKGREQYCSASRQSLLKLPAQHQTKELCFVIGSDGTLASVTARMDASLPALLAVVNRSRTIFGDFDAVQRDENSIQSRSTAMLWTREKPYVVQVASTNDPDGRPMEVTFTVADEAAMYADGAAKVSNKPAP
Ga0210127_1022204	Ga0210127_10222041	F065171	SPVEIDWASAQMRAWGRKLEFQAIPRSTEGFYVDLASKRGLVRRTGGEAGPTMHFLDTTPLADQLERAIHALRQADIGEPGAAAALSQQRIGVLEKVRPVVAPNLYGDLRRAPRTPVTMSAKVRIGLARICAELSPKAVVEPANDPDAGNEQIEVYAVADRPRNRPHVADEHDSLSASIAPVADPAWQIKDRSVAGLRISAAGGIGQSLVLGALVAVRQSDAIDWVLGAVRRLNKVSNDEVEAGV
Ga0210127_1022688	Ga0210127_10226881	F021565	VSIKYYAHFLVDEPDPRGLQEYRGVVELDGLPRRSGRELRDVALIIARNMGRQSRDVKVLQWARLH
Ga0210127_1022750	Ga0210127_10227502	F078884	KVLVAATKPQEEWIRGLPPGEIRPMQRTGKKFYIFPDAARNQIYVGGPKEYEAYMELHPDSGSKSQEAARKARAYRLKQDDTMTKATAHDLSNPFLGVTWADLGWVVPPYPGTPLGAPRPGGLPPY
Ga0210127_1023239	Ga0210127_10232391	F049078	MKVHVKHSLKTDVGSALKLCTDQKHQETIYDKLGGTDLRIKREGRSPNIKLRISRKEVANPPAAIRKLVPGTNEVSHTEDWAADGDGYAADI
Ga0210127_1023847	Ga0210127_10238471	F074182	TKRCRSEHHFKFFGEMDMANTKGQEEISVGKGTCVISWSKMGKEELICALGTLMDLIEYGGKYSAMPEFVDPAFRREFQTIMKTLKAPSKKGPRPKKERHTK
Ga0210127_1024315	Ga0210127_10243152	F029036	ERSPANFQINISMSAAKFEALLKVAISGRLPSKFFVNAGERASARETRGMGYVIRAGVRTKFWDNKRYRTLPVTNFSVILPITVPEAPESPAFEEDRAIAESIASNDQVAELADEFAVFQGETKNALTAVVSVVAVIGVLLLFINLVLIIK
Ga0210127_1028003	Ga0210127_10280031	F046145	LNFYWKLFEWITTHYEKTIPDCLECDPMALKSKPFSEAKTSFFITIRYLRVLSEKI
Ga0210127_1028783	Ga0210127_10287831	F048602	MASDSESKSGHLFLGLALGAIGGLITAILAHRETRGALRERSVKSLDYLHQQAGKLRESADVIVQQGKKLIACNG
Ga0210127_1029067	Ga0210127_10290671	F021129	MLRPAHIGHLAMLRALIRDGARDGSFQPELAWDSAASERFFAELKQALKSGYFVVQDRETREMRTVAVPGYVYWADETVGAEPPVGFGLFRAVHGGGFELWLAGLEGALRGKGHGRAMLKALFETPTGRATRFVRVRRSGRHADAVARLLADHGFTATRETSHETCFVRATPVIPGSRHAQPAPRRV
Ga0210127_1029553	Ga0210127_10295531	F056185	MRPRMLLLFRLLMVLVSLFIVAGCSGPQAKIRKVDLPKEKELRANWKNYNTYCLGSRGGNVDFADAMLFQLKSDKTIQRDDDWREVTSDQMASGCASLLSDSSPVMQLLGQNDEIFGYVIYNFNDQIWASIIDPKTIRL
Ga0210127_1029916	Ga0210127_10299161	F090576	EPAYMEAKAMSNEGGCCGGNVFADLKPSRQAEYLAMLAQEARLLEFSLEGEDSEARRIGDRLQRALESALDADGPDEAEGARDELEQVLTGARSAGLRLSAHLSEVEVDGILGTMKMRVLSTVLAPPASATRP
Ga0210127_1029982	Ga0210127_10299821	F030487	MECGIALLAGNWWAGLLTWVAFAVVVTAAVTFVAARRHPGAGSPPALSFDEVRRLSDRLEELSRRLD
Ga0210127_1030610	Ga0210127_10306101	F023374	VAPFAILRPNGNLQVAFRPGQHTLLARPTGAPPGTLPDVQWRRQMEIDPRVRGFKLQFNEADFK
Ga0210127_1031657	Ga0210127_10316572	F013223	QKLEAIKQRCLQAAQVKYICIHSSQLPRYRELREQILGPPDVVGSG
Ga0210127_1032780	Ga0210127_10327801	F021566	MFTCNNVDRFTARVLSGLVVSVTIVFGSLTYAVSNIQAFA
Ga0210127_1032799	Ga0210127_10327992	F019156	RMEESLHDRGTFRYYLSAFLTAAQSVTQYAREESKSKGGQQWYEKTIAGNVVLSYTSQAAFRHRFADWPGAEDQTGSSQRHSEDLIGSSQRYIEELEKFVQRGMEEGILSG
Ga0210127_1033088	Ga0210127_10330882	F060098	MDAPSLTRAASAVVMGIGGLLWLSALLFMAQTAQNSEQFSRLHPWILLINVVGL
Ga0210127_1033905	Ga0210127_10339051	F048393	MSIHSWKVALIAATTVTACLLLAAPVAMADKAAFKLEGAWVAKVVGFPGQWSYVLVPDSSGRRASGHGSIDLGFSPAVFGCALGETDSESPILISLEMRRPDTVVAYSVWYSLRTTDQGGTEIVFIGEVRSESKVVSPTKTEATHYFAFYLPSQDVAPADGFPDEGQTPACTAPVPVYTVDTRLPAP
Ga0210127_1034246	Ga0210127_10342462	F078294	QIVGETQSTLWSVFQSGPINMLVVIKNSGVNTMNYRFQEFNGSAWVDLGTSGSDYYNTLSVNEVKTLKVVSSYPQVQMVGNASGGAFLEFAVTRYFNRSSGGPIPILNL
Ga0210127_1034688	Ga0210127_10346881	F077981	CGINTKGTFVVHSKLGKGPMAAAKSSLLKTKRPGKDLNDPLFSDILAWTNDNASDLISGFFLQAADWTKGQIDEAINDLPGDIENPQTARQYLRASLPDKPLVSITNRELSKIVFAPKQKSDLPAKPKKIVANIDLYCQCQLAKLILSDKPQFKMAIGWEHSRHFVFDIRTSLERAAAILLELNELKHHIQQDNTNRIQNP
Ga0210127_1036762	Ga0210127_10367621	F061085	MSCPEGTLQACDFPQFLVDETPRFDELIMEDIRLTDSWIGNVSMGQMPMGTPPEVTQDRFRSVWANTTKAWSRVQNTGAGCSGNPCDPTANQIGWGADRLTYFAQQATWETPLLCYDQEMHVTHAEQHLSQII
Ga0210127_1036967	Ga0210127_10369671	F072484	HKIVVRTGAFKMKNTLKNSKSWFALIATLSCVMLVTNVYAANFLFFWSASADPSVTAYGIYQRTNDSSYEMIDKVNIQDLDNPSNPSYLITGLMDGNTYWFAATSITPSGTESNLSNETCITVNGQIVECSDNNKNGTTVFISCFITASGL
Ga0210127_1039396	Ga0210127_10393961	F000769	PDCPRGCSGRLHRHGFYWRFCKPTGAERFRVQRFLCVSCGHTVSVLPGTRLTYRPLEVGRLEGFFDTQAGIRTGLDPPPGLVEAGCLQRAWNRLLTRVPILKHAFGQLLPSKLHTAQQLWKALRRGMGSAEEMLRFLARSCKRSLLGDYTCLRPAP
Ga0210127_1039971	Ga0210127_10399711	F030143	GVALTVAVTGGLDLAFNQGKGKVLERWLKEMSGEEKSEPPKERPKLSDRAFSFFTGMPRQGPDSPKSEGQSPKS
Ga0210127_1041065	Ga0210127_10410652	F023896	VAWIAAALVFAAVVLPFLVYYTGTLTLGGYARGGPAQFLADFYADLFRWRTGAWVLLLGPATLVIVWRVLVAYAWPRAGE
Ga0210127_1041916	Ga0210127_10419161	F029147	MGRIVDLCGEVAAAADEGSEGLVLPLDAWDRLRADWSDEDIEDALAFVKDSLLQSELVEASDSLSAR
Ga0210127_1041933	Ga0210127_10419331	F072483	MEMLRIKPKSKSPPPTLEQDMKGYVSIHKIVDREILASIPKYRIYARPHGFTSEGFFNNGQSALDTTFALMASLSPPYIDYILDMRFSDPWPHDIFQLWKKKALETFSRYPQVYAVGVANEDSALWLQISKWKQLFDKHGDRVLGTFETPEKAEAFLDKLRNIKSS
Ga0210127_1045795	Ga0210127_10457951	F056185	SGPLAKIKKVDLPKENELRANWKNYHTYCLGSYAMLFQLKGDKTIQRDDDWREVTSDEMASGCASFLSDSSPVMQLLGENEEIFGYAIYNFDDQIWATIIDPKTIRLFYHVHPKGP
Ga0210127_1046406	Ga0210127_10464061	F071371	PIQCVACGRSFASPRWLGLQGPLCTACYDRLQREERVRLHHTEKPPGLRGWWKDLFRR
Ga0210127_1047273	Ga0210127_10472731	F081508	MKRLAVLVVLAVVGAMVQVDCALAETKGPEGMVTPVKEDQAIKGKGVDATSMEQVLLNPQGFNMEWSCGGKTGHSRVFFLRKEEKIIAEIRVIDIDAVDINKPENFGAESCTTFQELRDNGIVFFGCTSASWNIPLAYYPGEKTPFSG
Ga0210127_1050545	Ga0210127_10505452	F073725	MEKRAARRHRINTAIVCSHLNSADFGEPVDGRMKNCCANGLYAELGAHFKTGTVLVVRTTGSSCGYSRDEGFRSLAVAEVKWSKSKSVEGGSCYGTGLKYMMI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025964: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_CattailNLC_D2 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences