Sample 3300025615

Overview

Basic Information
IMG/M Taxon OID	3300025615 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101336 \| Ga0210086
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D2 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	389769327
Sequencing Scaffolds	57
Novel Protein Genes	61
Associated Families	53

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium HGW-Betaproteobacteria-3	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3
Not Available	18
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudooceanicola → Pseudooceanicola pacificus	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.015041	Long. (^o)	-122.501831	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000816	Metagenome / Metatranscriptome	879	Y
F003627	Metagenome / Metatranscriptome	476	Y
F003800	Metagenome / Metatranscriptome	468	Y
F005815	Metagenome / Metatranscriptome	389	Y
F007779	Metagenome / Metatranscriptome	345	Y
F008223	Metagenome / Metatranscriptome	337	Y
F008634	Metagenome / Metatranscriptome	330	Y
F016664	Metagenome / Metatranscriptome	245	Y
F016971	Metagenome / Metatranscriptome	243	Y
F019205	Metagenome / Metatranscriptome	231	Y
F020359	Metagenome / Metatranscriptome	224	Y
F021828	Metagenome / Metatranscriptome	217	Y
F026917	Metagenome	196	Y
F027937	Metagenome	193	Y
F029006	Metagenome	189	Y
F029111	Metagenome / Metatranscriptome	189	Y
F041204	Metagenome / Metatranscriptome	160	Y
F041403	Metagenome / Metatranscriptome	160	Y
F042645	Metagenome / Metatranscriptome	158	Y
F042887	Metagenome / Metatranscriptome	157	Y
F044525	Metagenome / Metatranscriptome	154	Y
F045770	Metagenome / Metatranscriptome	152	Y
F046476	Metagenome / Metatranscriptome	151	Y
F048463	Metagenome	148	Y
F050381	Metagenome / Metatranscriptome	145	Y
F051351	Metagenome	144	Y
F052687	Metagenome	142	Y
F054877	Metagenome / Metatranscriptome	139	Y
F055037	Metagenome / Metatranscriptome	139	Y
F055469	Metagenome / Metatranscriptome	138	Y
F056944	Metagenome	137	Y
F059476	Metagenome / Metatranscriptome	134	Y
F061025	Metagenome	132	Y
F061237	Metagenome / Metatranscriptome	132	Y
F061862	Metagenome	131	Y
F063710	Metagenome	129	Y
F064729	Metagenome	128	Y
F065228	Metagenome / Metatranscriptome	128	Y
F069741	Metagenome / Metatranscriptome	123	Y
F070127	Metagenome / Metatranscriptome	123	Y
F070506	Metagenome	123	Y
F074094	Metagenome	120	Y
F077317	Metagenome / Metatranscriptome	117	Y
F078289	Metagenome / Metatranscriptome	116	N
F078730	Metagenome / Metatranscriptome	116	Y
F081809	Metagenome / Metatranscriptome	114	Y
F084253	Metagenome	112	Y
F091343	Metagenome / Metatranscriptome	107	Y
F093892	Metagenome	106	Y
F094484	Metagenome	106	Y
F099226	Metagenome / Metatranscriptome	103	Y
F099323	Metagenome / Metatranscriptome	103	N
F105448	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0210086_1002751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	8084	Open in IMG/M
Ga0210086_1003026	All Organisms → cellular organisms → Bacteria	7578	Open in IMG/M
Ga0210086_1004418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	5995	Open in IMG/M
Ga0210086_1005828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5029	Open in IMG/M
Ga0210086_1007712	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4211	Open in IMG/M
Ga0210086_1013182	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2985	Open in IMG/M
Ga0210086_1017441	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → Phycisphaerales → unclassified Phycisphaerales → Phycisphaerales bacterium	2488	Open in IMG/M
Ga0210086_1020121	All Organisms → cellular organisms → Bacteria	2270	Open in IMG/M
Ga0210086_1020830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium HGW-Betaproteobacteria-3	2219	Open in IMG/M
Ga0210086_1023292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2067	Open in IMG/M
Ga0210086_1030976	All Organisms → cellular organisms → Bacteria	1726	Open in IMG/M
Ga0210086_1032005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1691	Open in IMG/M
Ga0210086_1032760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter caenitepidi	1668	Open in IMG/M
Ga0210086_1033350	All Organisms → cellular organisms → Bacteria → Proteobacteria	1649	Open in IMG/M
Ga0210086_1036959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1548	Open in IMG/M
Ga0210086_1040383	All Organisms → cellular organisms → Bacteria → Proteobacteria	1467	Open in IMG/M
Ga0210086_1045637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1361	Open in IMG/M
Ga0210086_1051354	All Organisms → cellular organisms → Bacteria → Proteobacteria	1269	Open in IMG/M
Ga0210086_1052554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1252	Open in IMG/M
Ga0210086_1054169	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1228	Open in IMG/M
Ga0210086_1061610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1138	Open in IMG/M
Ga0210086_1061920	Not Available	1135	Open in IMG/M
Ga0210086_1065676	Not Available	1096	Open in IMG/M
Ga0210086_1070468	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1053	Open in IMG/M
Ga0210086_1072319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1037	Open in IMG/M
Ga0210086_1073189	Not Available	1030	Open in IMG/M
Ga0210086_1077944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	994	Open in IMG/M
Ga0210086_1090139	Not Available	913	Open in IMG/M
Ga0210086_1092459	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales	900	Open in IMG/M
Ga0210086_1096019	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	881	Open in IMG/M
Ga0210086_1101045	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Miltoncostaeales → Miltoncostaeaceae → Miltoncostaea	856	Open in IMG/M
Ga0210086_1118296	Not Available	781	Open in IMG/M
Ga0210086_1123858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	760	Open in IMG/M
Ga0210086_1130969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	736	Open in IMG/M
Ga0210086_1131401	Not Available	735	Open in IMG/M
Ga0210086_1132961	Not Available	730	Open in IMG/M
Ga0210086_1136159	Not Available	720	Open in IMG/M
Ga0210086_1139204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	711	Open in IMG/M
Ga0210086_1144145	Not Available	696	Open in IMG/M
Ga0210086_1147704	Not Available	686	Open in IMG/M
Ga0210086_1151486	Not Available	677	Open in IMG/M
Ga0210086_1152166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	675	Open in IMG/M
Ga0210086_1153963	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → unclassified Halobacteria → Halobacteria archaeon	670	Open in IMG/M
Ga0210086_1160457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
Ga0210086_1162141	Not Available	651	Open in IMG/M
Ga0210086_1163740	Not Available	647	Open in IMG/M
Ga0210086_1169899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	633	Open in IMG/M
Ga0210086_1191626	Not Available	590	Open in IMG/M
Ga0210086_1195114	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
Ga0210086_1200209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudooceanicola → Pseudooceanicola pacificus	575	Open in IMG/M
Ga0210086_1216353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	549	Open in IMG/M
Ga0210086_1221842	Not Available	541	Open in IMG/M
Ga0210086_1222966	Not Available	539	Open in IMG/M
Ga0210086_1236110	Not Available	521	Open in IMG/M
Ga0210086_1239074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	517	Open in IMG/M
Ga0210086_1245834	Not Available	508	Open in IMG/M
Ga0210086_1251447	All Organisms → cellular organisms → Bacteria → Acidobacteria	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0210086_1002751	Ga0210086_10027513	F055037	MRMQTRNLPTKAGPVPDRMTIWPMDDGSYGLDATFQGASGYERATLHTGALEEDGVPHSFRQELGGAWTLRFGPLSATEISAALRAFVQ
Ga0210086_1003026	Ga0210086_10030269	F045770	MADLTADAYLRIWGEATTQRWVLDNSAAQTIYKGQPMILDISEDTVYVRGFVDATTVAADDIFIGIAAEGATVATTDTETDNELNIYVEPTIVGFPGSVFTDADVGDTMYMSDSATLSATAADNPMIGKLVRVEGGFQYVRLSSPTVTTGA
Ga0210086_1004418	Ga0210086_10044183	F019205	MFDTKKSFSTQMADAADLMIDFATLGEYGLEPVCRPMQACEARRRPASLRSTGSWSSAIDRFAAHT
Ga0210086_1005828	Ga0210086_10058287	F099226	MTNIARIVTVAVTLVVGTGAFSGIALANTNPLYPDFYPDRLKNPNVSLPSAGVGSGIPSPYRIGDRTDEPSVSLPSPEVGSGIPAPYRIGH
Ga0210086_1007712	Ga0210086_10077121	F078289	MKKTVIILVTLFIVVPLYGFNSLVRHEDIPKMRELGISQEVIQYFISNQTSSVSSEDVINMKQSGLNNDAILSAIKSDLYRPEHTSTSMKEAELIAKLKESGMSDEAVLQFIQTVKSTRQVDSDGNVTKQYTNESQRTQYPTTGATFPKPDNFGYDPSNGRFLLLVKPQNQ
Ga0210086_1013182	Ga0210086_10131822	F003627	MDRETARRNVVAGLLTGGIAAAIFALCFVAAMLYIAS
Ga0210086_1017441	Ga0210086_10174412	F091343	MANEVSANSDAVQHAALWLIGPDMPGLLRMGARFVSNHNGNIDKDIADKFGEKAVVFLSITASPPDISQMNADIDKLKRASRCGVVFQAMQAPTIPPGFKEDLYGFDIVTDDAVGLIAELTELVADYGMMIVGHTGERRVIPGPVPRVQGGQKFVVSVPHEFDHIGFTNAMTALVKRHNGIMKTPLRTVPGLLWWW
Ga0210086_1020121	Ga0210086_10201211	F007779	MFEGLLEKRATHRAYQSAVDDCLAVLFCGFPDGLLPALRQRVGNSGLVRRGQAEGTDARACSVQVAVLLIRKLIGSLSEQERQDLAQAFLRNDLSNPTYKGFKYMFRVVEQLNVAPALVSYLNTEVAGQLRGMSQKAIFNSWVEAQIGGVMGQLRERCLAEAELKTSLWQ
Ga0210086_1020830	Ga0210086_10208304	F029006	MNKIIITLMAIYFLGDPHLQYLAWLGDLKLYVVAAALALVSMPWIAEQLDG
Ga0210086_1023292	Ga0210086_10232923	F000816	MSYKKNTQPNRMRNPGKRVLIGETREEEAARLEREIAAHPVTKCEPGEYKPTSSRPGWSNKPFVPQKDQAVAEGIAKKMMRKPKG
Ga0210086_1030976	Ga0210086_10309761	F061237	VPRRDTRRGKIVSMDTPEQHPPVEDGSTEEGPLVDRRAVARGALLGLCVLIAASVVEAILDRNVDNFNDTGWIYPLFVAILFGYGLGGWQAGRAAPEGGLTNGTLAGLGAFGLWIPVRIVIWLVRDEHKGLFTGHSPALRPGQLFGQIVIAAGLGMLGGFVGSRAAARARGTTP
Ga0210086_1032005	Ga0210086_10320052	F081809	VKSARARFVYVVTLSLVALATLASPAGAATPTLASDKFKWFYWIGFVLAASLALWLLATAVGYYVRVVRPKHRGRPSS
Ga0210086_1032760	Ga0210086_10327603	F094484	MKRLALALLVTGLMAATAHAAESQGRRMIVFALYGAAGTSGSTATTTVIDFTTQVACREARDELRRHAKAPGFGLFATCVEP
Ga0210086_1033350	Ga0210086_10333502	F000816	MSYKKNTRPNTMRKPGKRVLIGETREEEAARLEREIAAHPVTKCEPGEYKPTSSRPGWSNKPFVPQKDQAIAEGIAKKMMRKPKA
Ga0210086_1036959	Ga0210086_10369592	F059476	MAQRGDRQQATRKWITVLLLVLLATGFFVASFFALPK
Ga0210086_1040383	Ga0210086_10403832	F054877	MRRHKNLRVLARFRPKTTADLESGLIDLVGKEAVFRYVRFVEDNDTPYSEQWVLTAEDERFGDYWFPESDLEILQERRTL
Ga0210086_1045637	Ga0210086_10456372	F000816	MSYKKNTQPNRMRKPGKRVLIGETREEEAARLEREIAAHPVTKCEPGEYKPTSSRPGWSNKPFLPQKDQAVAEGIAKKMMRKPKA
Ga0210086_1051354	Ga0210086_10513541	F064729	MQDRHGRWVMGELSEWIRYWRKTFAKCSKMHKDSRAHKQAYAELSDFLNKVEVSAEQQELDATVLWAVKFMQRMHELERDMG
Ga0210086_1051424	Ga0210086_10514241	F099323	MFAVWHKFKAFLGHRLILELAIVGSFIAFTMNPGSLGDLMRICGVIFLFNMVIGNYRIGDITLAHWVVLGIFLIMLLINSFMPDEMIHRRSFRYFLTIPGMIFAIHCLSKRANPQSRTLLFYCGITVLALIVQLIGYHTVERVVNSGGLESYSIYSNMHHFGAFASLILPVLVYFSTQIKGWLRLSCVGGAIVAFYLLWE
Ga0210086_1052554	Ga0210086_10525543	F055469	MLKRTVVTLAAAAFFWGAVPTQTAQARDDIWDLMNPSWWADQIFDDDHDDWWYYRHHAYSPYLGAPYVQRPRVIVI
Ga0210086_1054169	Ga0210086_10541691	F078289	MKKTVIILMTLFIVVPLYGFNSLVRHEDIPKMRELGVSQEVIQYFISNQTSSVSSEDVIKMKQSGLKNDDIMSAIKSDLYRPEQKSTSMKEAELIAKLKESGMSDEAVLQFIQTVKSTRRVDSDGNMTKQYTNESQRTQYPTEGATFPKPDNYGYDPLNGRFLLLVNPQN
Ga0210086_1055498	Ga0210086_10554982	F105448	MALEIGEVVMLPGYAPYPRYGRVTAREADGCVRVGGVQCGDPRCAAEHRHADQAWPASELLAAQAYQPRAQWEEGRKSSPNAPVD
Ga0210086_1061610	Ga0210086_10616101	F016664	MDQAVHDMPILNEARNTVEILVHISESLDDVQRNQLVDAIEDIVGVDSAEFCPLRYHLMLIRYDRDRYSSLDILSAVSDHKLQARLIGPI
Ga0210086_1061920	Ga0210086_10619202	F063710	MNKPLQRSLRVRIEHEPNRFSDGCLERIYEQLYPTKSREVAPVKNNKQSEVEPQTGKGGR
Ga0210086_1064752	Ga0210086_10647525	F061025	IVNAIGPFELSEYLGLAIVYFALAVTAPFLVEGRHQGG
Ga0210086_1065676	Ga0210086_10656763	F074094	TALAACGIVGGAYLPWLSGTIGIATLQRSGFDQGLGLGYSIGATALAISALLSVHMRVFKWLTMTLAFVLAGFVTRDLLNTYDAMQTMNQASSVDANVGMGLWIMIVSAAVAMIASVRLSEDQKIG
Ga0210086_1070468	Ga0210086_10704681	F077317	MEELITKSSDETSWYENEQPIREFLESFRKAEILEADDQAEELSWINVVKKSNQISS
Ga0210086_1072319	Ga0210086_10723192	F027937	VRAMVEVYREAEAPPQARTPVLKPKLRSWTGRVWRSAPESFMLMLKLDASVSLSEVEDNDLRALLSPFAAELASFSLYLDYTDENHLPLPWAVGAFYVEHGRHTFMRFYDFLETVPAHVLVTLLPQAGAQSDLVMSLVPYSLE
Ga0210086_1073189	Ga0210086_10731892	F041403	MARGSGDLRSASSDSSPVRGNRWRILVGSVALGAAALGLSGGFPTASASTNGPSGTAIVECSSGTVTQGDVQTSSLFVAKVSADALPDTPGGCTVQTG
Ga0210086_1077944	Ga0210086_10779442	F021828	MKYVVISRLAPGVDNARKALEVFQKAGLPPGTESLWASTDGKTFVNIVETDTPDMTASSTYAPFFEESTVIQVVPVDDSWMQAIQNAQSNWG
Ga0210086_1090139	Ga0210086_10901391	F061862	MQDKETMWYENYEPVQEYLDSEFPKKPCDAEKDPKAARFSWLEIMKKSFHNK
Ga0210086_1092459	Ga0210086_10924592	F052687	MARFLSILIILAAVGGGVYYLLTMEKVEDVKVIGKLQISQQFGSYVSASEGDGAAYYAVVEGKVKNNLGKPIKNLFIKYMIAGQETSATVFDLAPGQEIHFNTSGVATSASNPEYDFVGLYYD
Ga0210086_1096019	Ga0210086_10960192	F084253	VLIKAAQGFSVRRTSVRRSRKPAENAEQDKKGHLWMDTN
Ga0210086_1101045	Ga0210086_11010453	F003627	MDRETARRNMSSGLLTGGIAAAVFALCFVAAMLYVAT
Ga0210086_1114545	Ga0210086_11145451	F070127	MQKLNFSMTIDLTLTLKGDKASINIKNVDLIPAVVSLPVRLNFGDSLSQPNAKKKKTIHDIILQTAKKCVVDTGQNKFTGAKLFHLALLRHPALKRNTFAAQVIAAAPNHPSHRHYPNQKDYFTYLDK
Ga0210086_1118296	Ga0210086_11182961	F008223	PDPIEEINRIMARFTTATIMGVDRDDLGRYPAKQFKVMAFHYGAIEYLARRYGLDETQTLGLFVAFIDRYFNMPINETGSISERLQGFQDNADEHRFLEAGVDVFRRWHEQDERRAPLQLGQMLKDA
Ga0210086_1123858	Ga0210086_11238581	F005815	MTMNVTRLTTYWTIDEAATAIDFLDRLRDALWETYGEQITKMHREAYDNRFQDINQCELGFDDDIPF
Ga0210086_1130969	Ga0210086_11309692	F026917	MSAQQDAVVQIRRGVRMVLADETLFGVLSSGERIAVALVLDRRDLLEQAWGTIAESVHRLGPAWTEAALHVQREGWEEEMNR
Ga0210086_1131401	Ga0210086_11314012	F042645	FEENLNQAQRADKRQKMRMRRKMRDEVFNLLTWEKPTPTGIMNRWEERLQDVFKVMPYGFKEELFKMLVAKMQHPLRMAKTK
Ga0210086_1132961	Ga0210086_11329612	F093892	MIFLSKYQNNQLAEPVKIKTSPFRNLDRICILIEEVFTREKSIERKTYFCKPVV
Ga0210086_1136159	Ga0210086_11361591	F078730	MDYSNIIEPKRLTNMQEMEVHVNGPDGANRLFMYSGMAEVELCGGMPHPRWSLEVVCFDIGRRYDVENEGVIKILANAALAGHRTDGVASFA
Ga0210086_1139204	Ga0210086_11392041	F016971	MNQVARNLPIQEQRAVEVVVYISKDLGDEQRDLVVSALEKTNGIIGAEFCQTRNHLVLAKYDKHILSSQDVLRSFNTLKLDAKLVGPI
Ga0210086_1144145	Ga0210086_11441451	F050381	MKRLIVILSIILIPTIVFANFSIKLDNNTAKKMFYLLYWVDHTYDWPQPFNLAGGELQAKESIDLRSNYQNGKYFVVWSDNGDWQNKVMLNVNDDVESVIVTPIKSRMKK
Ga0210086_1147704	Ga0210086_11477041	F070506	MDTKKKHPLLSKIDQLVDDAKTELSRVGIETEGKRSDEILKMAREARNRAGRQAQTTDES
Ga0210086_1151486	Ga0210086_11514862	F020359	MSARKKAGTKTPEEFWSKVLAAPKVKRILEKRGFDAEAFRRDYEADTSRGPRAPKRPSKQEMDAVEAFQRTGDFDALKESLGTRSTAVANTALRRVLQFKALGGVKTVRRRSGAVE
Ga0210086_1152166	Ga0210086_11521661	F065228	TRAMMLEETAKIVLYTKQFGGTVTLLPNEWIEQLASLAEFI
Ga0210086_1153963	Ga0210086_11539631	F069741	MENIIFDVDQLSRLSKIEQAQRLEEAARRIDAVQRAAADDPNSRDWVDQQRQYLVDMQHLIFEC
Ga0210086_1160457	Ga0210086_11604571	F008634	IGNATSAMLISLLQALVDKDILTNVEVRALLTKAASDLGPHEYTAPVKGAIGIILNDILPKFPETGGD
Ga0210086_1162141	Ga0210086_11621411	F042887	MSEGVDSTPNPWRIQVREHPARRDSPEWREAIGAAVKATYPQAPFTSPHLKVARFTVEVTFRMTPLDLARPAVDLDNFVKPVLDTLFTSQNVQRLTGVLLPDVNDTRVFRLLIEKKEVDSPEHQGADITISWDPATTPGLSAP
Ga0210086_1163740	Ga0210086_11637402	F051351	VGLNPFRSQVNRRSDIVIVAVALVVVLALVLWGLFG
Ga0210086_1169899	Ga0210086_11698992	F099226	MTNIAKIFTVAATLVVGTSAVSGMALANTNPFVPDELEGSSVSVPASKVGSGIPTPYRIGNLADEQSDSLFRSPGVGSGIPAPYRLGN
Ga0210086_1191626	Ga0210086_11916262	F048463	VPSLPLSPADDGWGSPDGADLDRGDAPAFGREPVADDDLDLDLLELRVDPHVYADLTELEYFAVSWRYGLAGSPHSMKDLAAELGCNHSEARAVIGSAIDKLRQRLLTQ
Ga0210086_1195114	Ga0210086_11951141	F046476	VLINTLPGAPRLDVPSLFRPQFMAEVEQEHPEYFADLPKLP
Ga0210086_1200209	Ga0210086_12002092	F029111	MVSRTGIEENTSKQHEENAFPDILVTMSQIPDVNRELAEVGAIYSMFDAFRR
Ga0210086_1216353	Ga0210086_12163531	F008634	LRRAGAEAHMYGQGRELEIGNATSAILISLLQTLVDKDVLSNGEVRALLTKAAGDLGPHDYTAPVKGAIGIILDDILAKFPNGGD
Ga0210086_1221842	Ga0210086_12218421	F084253	VFVLIKAAQGFAARRTSVRRSRKPAENADQDKKGHF
Ga0210086_1222966	Ga0210086_12229661	F003800	PASSWAAPLTASCCRSSSMRGSTDCAGMGDERGDDADQRRADVYSSARIGAAAALTLVLVVLLVLDVAVPDYDISAGILLPLLGAILALLGLEASALWRGVR
Ga0210086_1236110	Ga0210086_12361101	F063710	MSKPRRSKPRRRSLHVRVEHEPNRISDECLERLYEQLHPTKSREVTPDKNNKQGEVELPKGKGGQQ
Ga0210086_1239074	Ga0210086_12390741	F044525	MRNPPILISVIGFFAALAGFAHLFFGLRVLGFDWFGALGDLPAFESVGIWGWM
Ga0210086_1245834	Ga0210086_12458342	F056944	SMNYVWDAAHAEAYEKQISRRGVLFTLEQARRFVADTGNNRMHRYDWPPVSVNPQRIINGIKMLGVDVGNWEG
Ga0210086_1251447	Ga0210086_12514471	F041204	MAVIVHWNGVDVPEELKSLKKGRYVLVPIDEPPELTEEQEAGLEAALASVRGGQGLSRDEAYAKAKANLE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025615: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - China_Galinas_PWB_D2 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences