| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300024341 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0127566 | Gp0272224 | Ga0233421 |
| Sample Name | Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_107_MG |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Restricted |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Dataset Contents | |
|---|---|
| Total Genome Size | 740493820 |
| Sequencing Scaffolds | 35 |
| Novel Protein Genes | 36 |
| Associated Families | 36 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria | 7 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| Not Available | 13 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 1 |
| All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group | 1 |
| All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales | 1 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae | 1 |
| All Organisms → cellular organisms → Bacteria → Acidobacteria | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater lake biome → freshwater lake → lake water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Indonesia: South Sulawesi | |||||||
| Coordinates | Lat. (o) | -2.4667 | Long. (o) | 121.2833 | Alt. (m) | N/A | Depth (m) | 107 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000748 | Metagenome / Metatranscriptome | 908 | Y |
| F000769 | Metagenome / Metatranscriptome | 898 | Y |
| F001057 | Metagenome / Metatranscriptome | 791 | Y |
| F002525 | Metagenome / Metatranscriptome | 552 | Y |
| F002824 | Metagenome | 527 | Y |
| F009271 | Metagenome / Metatranscriptome | 320 | Y |
| F016728 | Metagenome / Metatranscriptome | 245 | Y |
| F017088 | Metagenome | 242 | Y |
| F019160 | Metagenome | 231 | Y |
| F020376 | Metagenome | 224 | Y |
| F022232 | Metagenome / Metatranscriptome | 215 | Y |
| F023511 | Metagenome | 209 | Y |
| F024750 | Metagenome / Metatranscriptome | 204 | Y |
| F032705 | Metagenome | 179 | Y |
| F033261 | Metagenome / Metatranscriptome | 178 | Y |
| F037788 | Metagenome / Metatranscriptome | 167 | Y |
| F042227 | Metagenome | 158 | Y |
| F043839 | Metagenome / Metatranscriptome | 155 | Y |
| F049080 | Metagenome | 147 | Y |
| F050235 | Metagenome / Metatranscriptome | 145 | Y |
| F051242 | Metagenome | 144 | Y |
| F052683 | Metagenome / Metatranscriptome | 142 | Y |
| F053775 | Metagenome | 140 | Y |
| F054519 | Metagenome / Metatranscriptome | 139 | Y |
| F067652 | Metagenome / Metatranscriptome | 125 | Y |
| F068994 | Metagenome | 124 | Y |
| F075676 | Metagenome | 118 | N |
| F077448 | Metagenome | 117 | Y |
| F081864 | Metagenome | 114 | Y |
| F083717 | Metagenome / Metatranscriptome | 112 | N |
| F088111 | Metagenome / Metatranscriptome | 109 | Y |
| F091247 | Metagenome / Metatranscriptome | 107 | Y |
| F091390 | Metagenome | 107 | Y |
| F093357 | Metagenome | 106 | Y |
| F094907 | Metagenome | 105 | Y |
| F095696 | Metagenome | 105 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0233421_10003105 | All Organisms → cellular organisms → Bacteria | 5659 | Open in IMG/M |
| Ga0233421_10005064 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 4382 | Open in IMG/M |
| Ga0233421_10005490 | All Organisms → cellular organisms → Bacteria | 4212 | Open in IMG/M |
| Ga0233421_10030372 | All Organisms → cellular organisms → Bacteria | 1795 | Open in IMG/M |
| Ga0233421_10042165 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1529 | Open in IMG/M |
| Ga0233421_10043744 | Not Available | 1501 | Open in IMG/M |
| Ga0233421_10057696 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → unclassified Desulfobacterales → Desulfobacterales bacterium | 1310 | Open in IMG/M |
| Ga0233421_10064588 | All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium | 1239 | Open in IMG/M |
| Ga0233421_10101568 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 990 | Open in IMG/M |
| Ga0233421_10104888 | All Organisms → cellular organisms → Bacteria | 975 | Open in IMG/M |
| Ga0233421_10105271 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Nomurabacteria → Candidatus Nomurabacteria bacterium | 973 | Open in IMG/M |
| Ga0233421_10107660 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 962 | Open in IMG/M |
| Ga0233421_10116568 | All Organisms → cellular organisms → Bacteria | 925 | Open in IMG/M |
| Ga0233421_10145466 | All Organisms → cellular organisms → Bacteria → PVC group | 828 | Open in IMG/M |
| Ga0233421_10154063 | Not Available | 805 | Open in IMG/M |
| Ga0233421_10165891 | Not Available | 776 | Open in IMG/M |
| Ga0233421_10186883 | All Organisms → cellular organisms → Bacteria | 731 | Open in IMG/M |
| Ga0233421_10193572 | Not Available | 718 | Open in IMG/M |
| Ga0233421_10194092 | All Organisms → cellular organisms → Bacteria | 717 | Open in IMG/M |
| Ga0233421_10211440 | Not Available | 686 | Open in IMG/M |
| Ga0233421_10222804 | Not Available | 668 | Open in IMG/M |
| Ga0233421_10227539 | All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia | 661 | Open in IMG/M |
| Ga0233421_10229259 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 658 | Open in IMG/M |
| Ga0233421_10230327 | Not Available | 657 | Open in IMG/M |
| Ga0233421_10233760 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales | 652 | Open in IMG/M |
| Ga0233421_10245116 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | 636 | Open in IMG/M |
| Ga0233421_10245336 | Not Available | 636 | Open in IMG/M |
| Ga0233421_10315386 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae | 559 | Open in IMG/M |
| Ga0233421_10321968 | Not Available | 553 | Open in IMG/M |
| Ga0233421_10341228 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 536 | Open in IMG/M |
| Ga0233421_10347851 | Not Available | 531 | Open in IMG/M |
| Ga0233421_10349022 | Not Available | 530 | Open in IMG/M |
| Ga0233421_10353893 | Not Available | 526 | Open in IMG/M |
| Ga0233421_10362411 | Not Available | 520 | Open in IMG/M |
| Ga0233421_10369951 | All Organisms → cellular organisms → Bacteria → Acidobacteria | 515 | Open in IMG/M |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0233421_10003105 | Ga0233421_100031051 | F016728 | ILTVGVTRVWAGVDSAWEQKKLEARKMLENAAESHTSGARFVGHGLRQSIY |
| Ga0233421_10005064 | Ga0233421_100050642 | F053775 | VRRAIATVVQVTGSCNAGYQAGDKIVVDLETACLDKEQSGHLCLWALSAILANLSRIRPGEQALASCPDPATGLGGNVIFSVVRE |
| Ga0233421_10005490 | Ga0233421_100054901 | F002525 | VWAGVDSAWEQKKLEARKMLENAAESHTSGARFVWHGL |
| Ga0233421_10030372 | Ga0233421_100303721 | F091247 | VEQLEEEQPLQEELAVLLNFPPLEKAKADIIRLTFLLLHS |
| Ga0233421_10042165 | Ga0233421_100421652 | F051242 | MNEDDRLKSDEQKPLELSIYKPEEQAYQKLHLCEYLRELYEALEEEDKHSAEKRKD |
| Ga0233421_10043744 | Ga0233421_100437442 | F000769 | EDRPRCPRGCPERLHRHGSYGRYCQPTGGERFGVPRFLCVGCGHTVSVLPPGRLTYRPLEVERLQGFFDAQAGIRTGLDPPPGPVEAGCLQRAWNRFLTRAKVLTDSFGQMLPAELPTGPQLWQGLRRAVGAAEQMLRFLAQYCKRSLLGDYACLRPAP |
| Ga0233421_10057696 | Ga0233421_100576961 | F081864 | MQADTTQFQARHGRQPRGFGRWGFLVGNETFFFVGQYSNSKKEACKVAQAHGEERVVVLPDKKLAPQGGNPERPEKTQVQINNIKERLMAQAETRTINKRTRTVIPVKSMKAAEVMVVFDIQSKRTAHAIVKRGYHIVDYMESRQCPGTMEDVEEAYRIAKWWFHKKLGGRVPYGLDADDMIQEAVTRLVELAGDPRMQEASYKFYVVRSTMAEYLRSNKKH |
| Ga0233421_10064588 | Ga0233421_100645882 | F037788 | MKQVKGLGGWIRSAIWLELIIPGYFFGKTFGTADAKYRFLDQFMYPTLFIKICGYFRDLPVGHYTGRFLGVMAGALIGVLWVLLMGVFYKWVLKDWAYSKAARVGSMAFILIALMTGFMSDMFNESIGMGLRIDEDAPTELVGKSLVQDYGSFVKGTVITEENAGLLAAYGKVRANNEASAHSWWVASLIFMYAWFVLYFICTHRFFKRNLVPRESYFKLQMINLGAIIIYLRMGFGIAPAEYHYIVTRFQHLFGGGM |
| Ga0233421_10101568 | Ga0233421_101015681 | F067652 | MNVGDPNEGGKSNRQARESDMPVVVKIIGKVKPEGAKGHYYR |
| Ga0233421_10104888 | Ga0233421_101048882 | F019160 | MKLHLYYENVERPLVLEVPDSEIDGFLREYEEALHDTSVETFQWKNSSFRIAGLLAIVQERHVTS |
| Ga0233421_10105271 | Ga0233421_101052711 | F002824 | MTKLTNTALKPGNGKPSAEEMTVIKTVLNSAENKTEEKKPVLQIEPEKPVIPAPEPRKEMTIMEKILRIENLQLVVEKRAKLVQTRSELDRFQISSNDFNCTMRLNDSDGNVFTTSFTPGIKKVIDFLK |
| Ga0233421_10107660 | Ga0233421_101076601 | F093357 | MKNFEQTWRIKRLLAEKGETISSLSRKLDRPVGSVANNIYGYRANAQLQAEIAGFLGQPVPELFEAEAKAIGR |
| Ga0233421_10116568 | Ga0233421_101165682 | F001057 | VTTIVQLDGSNRIVLPLDLRRAAGVPRGQKLKASATPGRIVLEMEPTAQGKIVKRGKLKLWTGAVPATPLAEAVEAARHYER |
| Ga0233421_10145466 | Ga0233421_101454662 | F043839 | MLVIAEQLDATLKALDARAALSLEKLVRDALELVEAQNGTRPCAPLPPDFFTRISQEFGPEPLERGPQGELEKREEW |
| Ga0233421_10154063 | Ga0233421_101540631 | F023511 | IFIYDNRVFDNEKVFFYRNSFSAYDTFRFLGKTELNLEYERATGNTIRDEKYSFFNAPSRQFSAKETESCKANSGWISITEKNCLRELLLSTEAYEQIGKELFRIIVKTAKVTPFLKDGEYLYNLEIEYERAYQNSFFSLHTPDSSANPVIPHEALTWDNMDVSFDNVEITFDQVTF |
| Ga0233421_10165891 | Ga0233421_101658911 | F009271 | LSGSVANGHQTMHLVSPAPSKIPYGGFSPVRLQTRLTPRPPSPTPHCQLIGRYCRYLRPRRWFRNRSCDQAAPRAADHDRESSGPWLPSRLCCPAGSSLTMATCAPLSATRRLMVYSARLRHQAASHRRSPICSASPFTPCRRPYSGGPGNCTRRCLRRRFCLRHIRTGSAATCPTIPEPVGRVTKLQHSLDATAWRCCLPCSGQDFYDRACVGRVTPAAHVGYDWMAHRHLPSPDFHRL |
| Ga0233421_10186883 | Ga0233421_101868831 | F033261 | LTDDHQTDARQLANEFGDHWGQEFGHRIGKHDLCLDIVPPGYRLTSRRDENGQLQREVEYDPTAFFLSSWLRCLVFNLMSLFVKRLGGKYAKMWAGTLLRKFIRRPATLYLIGNELHVVFDPFQGQDDLRPLLEELNAKRVALPWLNGLVLQFSIKEDEPLHPLAELEQRKRLFGDG |
| Ga0233421_10193572 | Ga0233421_101935721 | F054519 | MDADLVALREEIDARLAEVEHSRGTCQGHPALARAIATLLRCQRAQLNQRAANKVVAAKAGGIVGALLVGAVEAGKHLFGK |
| Ga0233421_10194092 | Ga0233421_101940922 | F024750 | SAWAREEWEPACYQLPAHRLQLAHGVSGGRLIMFIKAWTQGEGKKDQDILGAATNPQPLWPWFTGEGFERRFAEASRWRTHRETTESASGVEVI |
| Ga0233421_10211440 | Ga0233421_102114402 | F068994 | MDEDIVCKNNGEISLILPETDQKGCEALMNRLLNIIQTHTLFKSDEVLKSYAQTISFQSYSYPTQFEIPESLKKMISC |
| Ga0233421_10222804 | Ga0233421_102228041 | F032705 | TFRASADRYKELSAEARKVAAETEQADVREVEKIRRNNLAFSRILGDINEVMTRMREASSASYVRVVNQNLGSLTTTARPGDTPEQREALVRLESLKDAAVKVVAQISGGRRSEDEARVQTFTMLPAARAVWVYAGDVFYAWAGGIAIDAIPTIFVILLTLGRPEDEAERDEERRRAAARAAAQAPRPVARSGAWPGGGADDAGIVPGSRARET |
| Ga0233421_10227539 | Ga0233421_102275392 | F050235 | ADAEAVFRHAFEGEPLDPEVRCRVRQRAARITEEIRRTHGLIDDETFQKLLSDDDDENP |
| Ga0233421_10229259 | Ga0233421_102292591 | F088111 | YSFADQASSSFFAVLDPYFFNTDTLHPNGLGGHIDSTQMVWLKAQVAQTTATHKFLFIHTPYYYVSNDPEEPSAADTSYTILWAFLDANKFDLYACGHSHLYARRTIDNSVLPDPQTIPPTSPWQNNVVHLLNGTCGAGPSTGTIDPDIRTAWNVHNDALTYYFSVVDVCGNTVTVNSYRGYTGAYSVFDTFTITK |
| Ga0233421_10230327 | Ga0233421_102303271 | F000748 | MTRSPDSLVSSAAEQSAAEKRDDKAFNGRQEGEAKLRAATEVNAVSASTTPPVSRPTQLDLFPGRACVPKAKPATIRNPARLSPDRRGGVSGGGTQRQNIKLTGETLFGPAKESSSGREAHKGRTRKRGIEAGQGVGGGRSTEEARDNRVEGRAATFVQRTEQGKAAGLPPLGKAQPRRQPAARKAPVR |
| Ga0233421_10233760 | Ga0233421_102337602 | F017088 | MSHTHYSGDPRQFTARFPSTCHTCGKPIKKGETIIYWPNGKKAGHYDCDIQDYRQSIASFEDEDRYNNVYH |
| Ga0233421_10245116 | Ga0233421_102451161 | F091390 | SYQNKDTNSTTIRINQSTKEKLESLDFVRKDTFDEILLKLIGCYEKNKR |
| Ga0233421_10245336 | Ga0233421_102453362 | F075676 | MRMFKSQRGAELSEIVAGLLVVMVAGVAATSVMFNGLDTAAGKVATWLGGLTIP |
| Ga0233421_10315386 | Ga0233421_103153861 | F094907 | MFLISHTENTIEDTLQVEFRPARNGTGVICRLPNGKIAFPSRYHWQAPLPQPFEIWAVLPCGGTASVAYVKPIQRLAEAPFLDTRAGRFGNSLLWRLGSFLAALVSLARRPHVSALPAASQTQGD |
| Ga0233421_10320598 | Ga0233421_103205982 | F052683 | QMKTKKGVMNDVIGVFILVLVVSVIAGMTFLFVSQLKSQVETTATGGVNSTSYNAINKTEAAGATIVNYLPLLFLAIVFGAILAVVLKIILPYINLGNQMGSSF |
| Ga0233421_10321968 | Ga0233421_103219681 | F077448 | MHVMIELKIPGLGSEVTVTPEPLNSKETAVIGVIKAFDRSITPRFSNRDKDGFDSQREAESENNSKRPWVTVAPAESQLVVELEKVGHSQSLPASGQPLGDGLIVFGSLRMKEDAMTVQIHDIEGKEATIVLDIARTHKIGL |
| Ga0233421_10341228 | Ga0233421_103412281 | F049080 | MAKDLVAKLFLSKEEIVHIYHGGVLSVKIKGKDTDGLVEIFCREVSERKGTRIRFKTIDA |
| Ga0233421_10347851 | Ga0233421_103478511 | F022232 | NIKVTYLGADGDSNVGIGSRTNVLEYTAGSGSSGSYLNNFTSTGKTNILSGGNGSGFITNMVDVGGGTNRPARYYRIRVLAP |
| Ga0233421_10349022 | Ga0233421_103490222 | F020376 | FEGKSQEDLATLTQREDVAVLIGKELTGFLLEEHVALDPAAQPAEASATCCPKCGQPGTPVVQGGEELPERTVTTRVGPIRVRRQRWHCAKCRIIFFSAGRTAGSGDGRL |
| Ga0233421_10353893 | Ga0233421_103538932 | F095696 | NFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPEILAKIRTGVFDIPAPKP |
| Ga0233421_10362411 | Ga0233421_103624111 | F083717 | MFAQARASRRPSQMGATPGTSGKHSTGNVPTPGRTYYQRGKGARYVPVKTGKTRRAGSKRSEDLAHSWRRNRNADSTVVEVLTGVSYAGRVQGGADSVRQQTRIMNARGWETVDEVGAAVEDNIGKVMRNTVARLYQQWFSRHGISSTVSGT |
| Ga0233421_10369951 | Ga0233421_103699511 | F042227 | PLGAVLSTWQWGFVRLTRSTERIGDLLLDKRWRAIVGLKPEHGGSPDRAAEILDGLSIDEWNEMMLEDFFIARRAGMLTDDGPYGKRCAVVDLNELFKSEKVHCARCQVREKTVVDAKGEKRTVLEYYHQAVALTWVSGKIPFVIGWEMLSPGEGELTAALRLLRRLLPRL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |