Metagenome Family F095696

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F095696
Family Type	Metagenome
Number of Sequences	105
Average Sequence Length	56 residues
Representative Sequence	YLNFGRQLYKLSRQQGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKQ
Number of Associated Samples	61
Number of Associated Scaffolds	105

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.02 %
% of genes near scaffold ends (potentially truncated)	86.67 %
% of genes from short scaffolds (< 2000 bps)	79.05 %
Associated GOLD sequencing projects	55
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.286 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (22.857 % of family members)
Environment Ontology (ENVO)	Unclassified (23.810 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (56.190 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.84% β-sheet: 0.00% Coil/Unstructured: 51.16%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 105 Family Scaffolds
PF04255	DUF433	2.86
PF13860	FlgD_ig	2.86
PF13517	FG-GAP_3	2.86
PF07927	HicA_toxin	1.90
PF01797	Y1_Tnp	1.90
PF10047	DUF2281	1.90
PF13091	PLDc_2	0.95
PF01555	N6_N4_Mtase	0.95
PF05635	23S_rRNA_IVP	0.95
PF04851	ResIII	0.95
PF13432	TPR_16	0.95
PF04055	Radical_SAM	0.95
PF08281	Sigma70_r4_2	0.95
PF14076	DUF4258	0.95
PF13476	AAA_23	0.95
PF02371	Transposase_20	0.95
PF13360	PQQ_2	0.95
PF08327	AHSA1	0.95
PF09704	Cas_Cas5d	0.95
PF09572	RE_XamI	0.95
PF10571	UPF0547	0.95
PF10049	DUF2283	0.95
PF00158	Sigma54_activat	0.95
PF04555	XhoI	0.95
PF13229	Beta_helix	0.95
PF07676	PD40	0.95
PF00691	OmpA	0.95
PF00082	Peptidase_S8	0.95
PF10282	Lactonase	0.95
PF00999	Na_H_Exchanger	0.95
PF05973	Gp49	0.95
PF04313	HSDR_N	0.95
PF00263	Secretin	0.95

COG ID	Name	Functional Category	% Frequency in 105 Family Scaffolds
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	2.86
COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	General function prediction only [R]	1.90
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	1.90
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.95
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.95
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.95
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.95
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.95
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.95
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.95
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.95
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.95
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.95
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.95

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
All Organisms	root	All Organisms	45.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
cellular organisms	root	All Organisms → cellular organisms	45.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	21.90 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.90 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.95 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.95 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.95 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	21.90 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.90 %
Armatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes	1.90 %
bacterium SM23_31	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SM23_31	0.95 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.95 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.95 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.95 %
candidate division Zixibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
candidate division WOR-3	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	18.10 %
unclassified Armatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes	1.90 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.90 %
unclassified candidate division Zixibacteria	no rank	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria	0.95 %
Candidatus Edwardsbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Edwardsbacteria	0.95 %
candidate division KSB1	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1	0.95 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.95 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.95 %
bacterium SM23_31	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SM23_31	0.95 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
candidate division WOR-3 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	9.52 %
candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	2.86 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	1.90 %
candidate division Zixibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium	0.95 %
Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20	0.95 %
Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9	0.95 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.95 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.95 %
unclassified candidate division KSB1	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1	0.95 %
Candidatus Edwardsbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Edwardsbacteria	0.95 %
bacterium SM23_31	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SM23_31	0.95 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
candidate division WOR-3 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	9.52 %
candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	2.86 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1.90 %
candidate division KSB1 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	0.95 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.95 %
unclassified Nitrospiraceae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae	0.95 %
candidate division Zixibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium	0.95 %
Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20	0.95 %
Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9	0.95 %
Candidatus Edwardsbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Edwardsbacteria	0.95 %
bacterium SM23_31	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SM23_31	0.95 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
candidate division WOR-3 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	9.52 %
candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	2.86 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1.90 %
Nitrospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	0.95 %
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	0.95 %
candidate division KSB1 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	0.95 %
candidate division Zixibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium	0.95 %
Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20	0.95 %
Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9	0.95 %
Candidatus Edwardsbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Edwardsbacteria	0.95 %
bacterium SM23_31	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SM23_31	0.95 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.29 %
candidate division WOR-3 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	9.52 %
candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	2.86 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1.90 %
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	0.95 %
Nitrospiraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	0.95 %
candidate division KSB1 bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	0.95 %
candidate division Zixibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium	0.95 %
Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20	0.95 %
Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9	0.95 %
Candidatus Edwardsbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Edwardsbacteria	0.95 %
bacterium SM23_31	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SM23_31	0.95 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.95 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_100911775	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1548	Open in IMG/M
3300003541\|JGI20214J51650_10955180	Not Available	598	Open in IMG/M
3300004693\|Ga0065167_1072148	Not Available	587	Open in IMG/M
3300004775\|Ga0007798_10128934	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300004776\|Ga0007800_10081581	Not Available	781	Open in IMG/M
3300004776\|Ga0007800_10114409	Not Available	658	Open in IMG/M
3300004776\|Ga0007800_10118852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG_4_8_14_3_um_filter_66_20	645	Open in IMG/M
3300004776\|Ga0007800_10159633	Not Available	556	Open in IMG/M
3300004776\|Ga0007800_10183432	Not Available	518	Open in IMG/M
3300006224\|Ga0079037_100590175	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	1077	Open in IMG/M
3300009081\|Ga0105098_10442494	Not Available	652	Open in IMG/M
3300010302\|Ga0116202_10000708	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	18844	Open in IMG/M
3300010302\|Ga0116202_10022733	All Organisms → cellular organisms → Bacteria → FCB group → candidate division Zixibacteria → unclassified candidate division Zixibacteria → candidate division Zixibacteria bacterium	3434	Open in IMG/M
3300010302\|Ga0116202_10048339	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	2201	Open in IMG/M
3300010319\|Ga0136653_10005791	Not Available	6696	Open in IMG/M
3300010319\|Ga0136653_10078779	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1614	Open in IMG/M
3300010319\|Ga0136653_10101018	Not Available	1389	Open in IMG/M
3300010319\|Ga0136653_10118518	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	1262	Open in IMG/M
3300010319\|Ga0136653_10210345	Not Available	889	Open in IMG/M
3300010319\|Ga0136653_10255376	Not Available	790	Open in IMG/M
3300011118\|Ga0114922_10967875	Not Available	692	Open in IMG/M
3300011340\|Ga0151652_10212084	Not Available	801	Open in IMG/M
3300013088\|Ga0163200_1274580	Not Available	529	Open in IMG/M
3300013091\|Ga0163210_1055010	Not Available	1472	Open in IMG/M
3300013092\|Ga0163199_1198861	Not Available	786	Open in IMG/M
(restricted) 3300013125\|Ga0172369_10500176	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	590	Open in IMG/M
(restricted) 3300013127\|Ga0172365_10135221	Not Available	1548	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10042279	All Organisms → cellular organisms → Bacteria	3234	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10055357	All Organisms → cellular organisms → Bacteria	2756	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10077695	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2250	Open in IMG/M
(restricted) 3300013128\|Ga0172366_10128087	Not Available	1674	Open in IMG/M
(restricted) 3300013129\|Ga0172364_10276117	Not Available	1105	Open in IMG/M
(restricted) 3300013129\|Ga0172364_10353349	Not Available	951	Open in IMG/M
(restricted) 3300013129\|Ga0172364_10872366	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	552	Open in IMG/M
(restricted) 3300013133\|Ga0172362_10218667	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	1377	Open in IMG/M
(restricted) 3300013133\|Ga0172362_10311008	Not Available	1114	Open in IMG/M
(restricted) 3300013133\|Ga0172362_10595690	Not Available	750	Open in IMG/M
(restricted) 3300013137\|Ga0172375_10574168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	735	Open in IMG/M
(restricted) 3300013138\|Ga0172371_10013431	All Organisms → cellular organisms → Bacteria → Proteobacteria	10671	Open in IMG/M
(restricted) 3300013138\|Ga0172371_10682307	Not Available	700	Open in IMG/M
3300014494\|Ga0182017_10551820	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300014494\|Ga0182017_11005486	Not Available	500	Open in IMG/M
3300014498\|Ga0182019_10824157	Not Available	665	Open in IMG/M
3300014498\|Ga0182019_10956163	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	620	Open in IMG/M
3300014502\|Ga0182021_10099743	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	3373	Open in IMG/M
3300014502\|Ga0182021_10412708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium CG07_land_8_20_14_0_80_40_9	1603	Open in IMG/M
3300014502\|Ga0182021_11195763	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300014502\|Ga0182021_12138734	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	674	Open in IMG/M
3300014502\|Ga0182021_12286736	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	651	Open in IMG/M
3300014502\|Ga0182021_12391475	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	636	Open in IMG/M
3300014502\|Ga0182021_12981583	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	567	Open in IMG/M
3300014839\|Ga0182027_11397251	Not Available	693	Open in IMG/M
3300018018\|Ga0187886_1253080	Not Available	665	Open in IMG/M
3300020074\|Ga0194113_10347568	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	1107	Open in IMG/M
3300020084\|Ga0194110_10720718	Not Available	615	Open in IMG/M
3300022208\|Ga0224495_10193566	Not Available	852	Open in IMG/M
3300022553\|Ga0212124_10367972	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300022556\|Ga0212121_10004392	All Organisms → cellular organisms → Bacteria	14688	Open in IMG/M
3300022556\|Ga0212121_10066087	Not Available	2894	Open in IMG/M
3300022556\|Ga0212121_10153840	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium JGI_Cruoil_03_51_56	1675	Open in IMG/M
3300022556\|Ga0212121_10257570	Not Available	1199	Open in IMG/M
3300022556\|Ga0212121_10407121	Not Available	890	Open in IMG/M
3300022653\|Ga0236337_1225306	Not Available	525	Open in IMG/M
(restricted) 3300023177\|Ga0233423_10013142	All Organisms → cellular organisms → Bacteria	3704	Open in IMG/M
(restricted) 3300023177\|Ga0233423_10088480	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Edwardsbacteria	1324	Open in IMG/M
(restricted) 3300024300\|Ga0233420_10126021	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium SM23_31	851	Open in IMG/M
(restricted) 3300024333\|Ga0233422_10361853	Not Available	567	Open in IMG/M
(restricted) 3300024341\|Ga0233421_10353893	Not Available	526	Open in IMG/M
3300025136\|Ga0209610_1068225	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	1239	Open in IMG/M
3300025145\|Ga0209609_10045952	Not Available	1724	Open in IMG/M
3300025145\|Ga0209609_10057055	All Organisms → cellular organisms → Bacteria	1495	Open in IMG/M
3300025279\|Ga0208047_1024837	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300025279\|Ga0208047_1032395	Not Available	1465	Open in IMG/M
3300025279\|Ga0208047_1086657	Not Available	798	Open in IMG/M
3300025306\|Ga0208045_1067767	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300025807\|Ga0208828_1036918	Not Available	1178	Open in IMG/M
3300028169\|Ga0268279_1173080	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300028276\|Ga0268282_1106407	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division KSB1 → unclassified candidate division KSB1 → candidate division KSB1 bacterium	627	Open in IMG/M
3300028299\|Ga0268276_1034275	Not Available	2059	Open in IMG/M
3300031111\|Ga0272444_10444312	Not Available	935	Open in IMG/M
3300031707\|Ga0315291_10749126	Not Available	859	Open in IMG/M
3300031862\|Ga0315280_10210265	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	1092	Open in IMG/M
3300032046\|Ga0315289_11276720	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3	583	Open in IMG/M
3300032046\|Ga0315289_11395581	Not Available	544	Open in IMG/M
3300032053\|Ga0315284_10189263	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	2672	Open in IMG/M
3300032163\|Ga0315281_11191227	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300032163\|Ga0315281_11538007	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	651	Open in IMG/M
3300032163\|Ga0315281_12150418	Not Available	529	Open in IMG/M
3300032173\|Ga0315268_12604750	Not Available	519	Open in IMG/M
3300032342\|Ga0315286_11897351	Not Available	557	Open in IMG/M
3300033416\|Ga0316622_100050753	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → unclassified Nitrospiraceae → Nitrospiraceae bacterium	3892	Open in IMG/M
3300033416\|Ga0316622_100186303	All Organisms → cellular organisms → Bacteria	2199	Open in IMG/M
3300033416\|Ga0316622_101431004	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	808	Open in IMG/M
3300033416\|Ga0316622_101529283	Not Available	779	Open in IMG/M
3300033485\|Ga0316626_11131487	Not Available	698	Open in IMG/M
3300033485\|Ga0316626_11945073	Not Available	532	Open in IMG/M
3300033488\|Ga0316621_11082693	Not Available	601	Open in IMG/M
3300033513\|Ga0316628_102131911	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division WOR-3 → candidate division WOR-3 bacterium	744	Open in IMG/M
3300033557\|Ga0316617_101716702	Not Available	639	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.05%
Engineered	Engineered	0.95%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	78.10%
Terrestrial	Environmental → Terrestrial	20.95%
Lab Enrichment	Engineered → Lab Enrichment	0.95%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	69.52%
Soil	Environmental → Terrestrial → Soil	20.95%
Marine	Environmental → Aquatic → Marine	5.71%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	2.86%
Defined Media	Engineered → Lab Enrichment → Defined Media	0.95%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	59.05%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	20.95%
Lentic	Environmental → Aquatic → Freshwater → Lentic	6.67%
Wetlands	Environmental → Aquatic → Marine → Wetlands	3.81%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.86%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	2.86%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.95%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.95%
Sediment	Environmental → Aquatic → Marine → Sediment	0.95%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	36.19%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	22.86%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	11.43%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.52%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	6.67%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	2.86%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	2.86%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.95%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.95%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.95%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.95%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.95%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.95%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.95%
Unclassified	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified	0.95%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	22.86%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	17.14%
Anoxic Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water	16.19%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	11.43%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	9.52%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater	6.67%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	2.86%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	1.90%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	1.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.95%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.95%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.95%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.95%
Wetland	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland	0.95%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.95%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.95%
Marine Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Marine Sediment	0.95%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.95%
Anaerobic Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Anaerobic Enrichment Culture	0.95%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300003541	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300004693	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA7.5M (version 2)	Environmental	Open in IMG/M
3300004775	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA17M	Environmental	Open in IMG/M
3300004776	Freshwater microbial communities from Crystal Bog, Wisconsin, USA - MA14M	Environmental	Open in IMG/M
3300005216	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_CattailNLA_D2	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300010302	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG	Environmental	Open in IMG/M
3300010319	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 275m metaG	Environmental	Open in IMG/M
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental	Open in IMG/M
3300011340	Combined Assembly of Wetland Metatranscriptomes	Environmental	Open in IMG/M
3300013088	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_200m	Environmental	Open in IMG/M
3300013091	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_220m	Environmental	Open in IMG/M
3300013092	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_150m	Environmental	Open in IMG/M
3300013125 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_11.25m	Environmental	Open in IMG/M
3300013127 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 48cm	Environmental	Open in IMG/M
3300013128 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 69cm	Environmental	Open in IMG/M
3300013129 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cm	Environmental	Open in IMG/M
3300013130 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s2_kivu2a2	Environmental	Open in IMG/M
3300013133 (restricted)	Sediment microbial communities from Lake Kivu, Rwanda - Sediment s1_kivu2a2	Environmental	Open in IMG/M
3300013137 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1m	Environmental	Open in IMG/M
3300013138 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_12m	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300020074	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m	Environmental	Open in IMG/M
3300020084	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m	Environmental	Open in IMG/M
3300022208	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022553	Powell_combined assembly	Environmental	Open in IMG/M
3300022556	Kivu_combined assembly	Environmental	Open in IMG/M
3300022653	Freshwater microbial communities from thermokarst lake SAS2a, Kuujjuarapick, Canada - Sample Winter W1	Environmental	Open in IMG/M
3300023177 (restricted)	Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_112_MG	Environmental	Open in IMG/M
3300024300 (restricted)	Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_102_MG	Environmental	Open in IMG/M
3300024333 (restricted)	Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_110_MG	Environmental	Open in IMG/M
3300024341 (restricted)	Freshwater microbial communities from Lake Matano, South Sulawesi, Indonesia - Watercolumn_Matano_2014_107_MG	Environmental	Open in IMG/M
3300025136	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 275m metaG (SPAdes)	Environmental	Open in IMG/M
3300025145	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 325m metaG (SPAdes)	Environmental	Open in IMG/M
3300025279	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_220m (SPAdes)	Environmental	Open in IMG/M
3300025306	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_200m (SPAdes)	Environmental	Open in IMG/M
3300025807	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_160m (SPAdes)	Environmental	Open in IMG/M
3300028169	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m	Environmental	Open in IMG/M
3300028276	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2011_5_24_120m	Environmental	Open in IMG/M
3300028299	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m	Environmental	Open in IMG/M
3300028916	Lab enriched sediment microbial communities from oil refinery in Oklahoma, USA. Combined Assembly of Gp0220779, Gp0324998	Engineered	Open in IMG/M
3300031111	Marine sediment archaeal communities from Little Sippewissett salt marsh, Falmouth, MA, United States - SSM-Form-13	Environmental	Open in IMG/M
3300031707	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_20	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300032046	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40	Environmental	Open in IMG/M
3300032053	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_16	Environmental	Open in IMG/M
3300032163	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032173	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_top	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1009117752	3300001213	Wetland	QLYKLSRQQGISGNSFAMAAEVLLDKWHNRGLDPVVLAAIRKDVFDVPNPTPPEE*
JGI20214J51650_109551802	3300003541	Wetland	TIFYVAYLNYARQLYKLSRQQGISGESFALGAQVMLDKWANRGLDSVVLARIRTEVFDASAPTP*
Ga0065167_10721483	3300004693	Freshwater	WKLSRQQEISGENFAMAAQVLLDKWAARGLNPTVLAAIRTEVFDIGEPKP*
Ga0007798_101289342	3300004775	Freshwater	YVPYLNFGRQLYKLSRQQQISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDISAPKP*
Ga0007800_100815811	3300004776	Freshwater	YVPYLNFGRQLYKLSRQQQISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDISAPRP*
Ga0007800_101144091	3300004776	Freshwater	KLSRQQQISGESFAMAAQVLLDKWSARGCDPKVLAKIRTDVFDISAPKP*
Ga0007800_101188521	3300004776	Freshwater	NFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPKILAKIRTDVFDIPAPKP*
Ga0007800_101596331	3300004776	Freshwater	YKLSRQQGISGESFALGAQVLLDKWSARGLDSAVLARIRTEVFDAVAPAP*
Ga0007800_101834321	3300004776	Freshwater	GRQLWKLSRQQEISGESFAMAAQVLLDKWAARGLNPTVLAAIRTDVFDIGEPKP*
Ga0068994_102002351	3300005216	Natural And Restored Wetlands	GISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKS*
Ga0079037_1005901751	3300006224	Freshwater Wetlands	IQFVPYLSYGRQLYKLSRQREISGESLKMANRVLHDKWHNRGLDPVVLAAIAKDVFDIAPL*
Ga0105098_104424941	3300009081	Freshwater Sediment	LYKLSRQQGISGESFAIQAQVLLDKWAARGLDSAVLARIRTEVFDASTPTP*
Ga0116202_1000070819	3300010302	Anoxic Lake Water	QLYKLSRQQFISGESLAMAAQVLLDKWAARGSDPEVLAKVRKDFSDVEPPRP*
Ga0116202_100227331	3300010302	Anoxic Lake Water	NFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKS*
Ga0116202_100483392	3300010302	Anoxic Lake Water	LSYARQLYKLSRQQGISGESFALRAQVLLDKWTSRGLDAGVLARIRTEVFDSVAPTP*
Ga0136653_100057911	3300010319	Anoxic Lake Water	LNYARQLYKLSRQQGISGESFALQAQVLLDKWAGRGLEPAVLARIRTEVFDTSAPTP*
Ga0136653_100787794	3300010319	Anoxic Lake Water	LYKLSKQRGISGESFAMAAQVLLDKWAARGCDPNVLAKIRTDVFDIPAPK*
Ga0136653_101010184	3300010319	Anoxic Lake Water	LNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPK*
Ga0136653_101185184	3300010319	Anoxic Lake Water	STSQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRSDVFDIPAPKA*
Ga0136653_102103451	3300010319	Anoxic Lake Water	LSYARQLYKLSRQRGISGESFALQAQVLLDKWANRGLDAAVLARIRTEVFDAVAPAP*
Ga0136653_102553761	3300010319	Anoxic Lake Water	LYVSYLNFGRQLYKMTRKQNITGESFAMAAQVLLDKWAARGCNPDVLATIRKEVFNIDAPKK*
Ga0114922_109678752	3300011118	Deep Subsurface	RQLYKLSRQERVSDENFAMAAQVLLDKWAARGCDPKVLAKIRKDVFDIDVPKP*
Ga0151652_102120843	3300011340	Wetland	AYLNYARQLYKLSRQQGISGESFALSAQVLLDKWSARGLDSAVLARIRTEVFDAVAPVP*
Ga0163200_12745801	3300013088	Freshwater	RQLYKLTHQQHITGESFAMAAQVLLDKWASRGCDPKVLAAIRKDVFNIDAPKK*
Ga0163210_10550101	3300013091	Freshwater	LNFGRQLCKLTRQQNITGESFAMAAHVLLDKWAARGCDPDVLATIRKEVFNVDAPKK*
Ga0163199_11988612	3300013092	Freshwater	QLYKLSRQQGISGESFAMSAQVLLDKWSARGLDSAILARIRTEVFDTSAATP*
(restricted) Ga0172369_105001761	3300013125	Freshwater	KLSRQQGISGESFALQAQVLLDKWAGRGLEPAVLARIRTEVFDTSAPTP*
(restricted) Ga0172365_101352212	3300013127	Sediment	PYLSYARQLYKLSRQKGISGESFALSAQVLLEKWANRGLDADVLARIRTEVFDAVAPAP*
(restricted) Ga0172366_100422791	3300013128	Sediment	SKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKA*
(restricted) Ga0172366_100553574	3300013128	Sediment	QLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPK*
(restricted) Ga0172366_100776952	3300013128	Sediment	YLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKS*
(restricted) Ga0172366_101280872	3300013128	Sediment	LTRQQEISGESFAMAAKVLLDKWEARGLNPTVLAAIRTEVFDIGEPKP*
(restricted) Ga0172364_102761171	3300013129	Sediment	RQLWKLTRQQEINGESFAMAAKVLLDKWEARGLNPTVLAAIRTEVFDIGEPKP*
(restricted) Ga0172364_103533491	3300013129	Sediment	KQRGISGESFAMDAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKP*
(restricted) Ga0172364_108723662	3300013129	Sediment	QKVSGESMPLAARVLSDKRKARGCDPKVLALIRTEVYDIAEP*
(restricted) Ga0172363_102751343	3300013130	Sediment	CGVSTSQYVPHLSFGRQLYKMSRQQFISGESLAMATQVLLDKWAARGCDPKVLAKIRKEVFDVEAPE*
(restricted) Ga0172362_102186673	3300013133	Sediment	YLNFGRQLYKLSRQQGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKQ*
(restricted) Ga0172362_103110081	3300013133	Sediment	RQQEISGESFAMAAKVLLDKWEARGLNPTVLAAIRTEVFDIGEPKP*
(restricted) Ga0172362_105956901	3300013133	Sediment	YKLSKQRGISGESFAMAAQVLLDKWAARGCDPNVLAKIRTDVFDIPAPK*
(restricted) Ga0172375_105741681	3300013137	Freshwater	LYKLSRQQGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKQ*
(restricted) Ga0172371_100134311	3300013138	Freshwater	LSRQQNISGESFAMAAQVLVDKWAARGCDPKVLDKIRTDVFDVAAPKP*
(restricted) Ga0172371_106823071	3300013138	Freshwater	GRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKP*
Ga0182017_105518201	3300014494	Fen	LSYARQLYKLSRQQGISGESFALVAKVLLDKWAARGLDSAVLARIRTEVFDAGAPAP*
Ga0182017_110054862	3300014494	Fen	MQYVPYLNVGRQSYELSRQKLISGESFAMAAHVQLDKWTARGCDPKVLAKIRKDVFDIDVPV*
Ga0182019_108241572	3300014498	Fen	RQQGISGESFALSAEVLLQKWAARGLDSAVLAQIRTEVFDVSAPAP*
Ga0182019_109561631	3300014498	Fen	YKLSRQQGISGESFALVAKVLLDKWASRGLNPAVLAAIRTDVFDASAPTP*
Ga0182021_100997434	3300014502	Fen	LRQGISGESFALVAKVLLDKWTARGLDAAVLARIRTEVFDASAPTP*
Ga0182021_104127081	3300014502	Fen	YARQLYKLSRQQSISGESFALSVQVLLDKWTARGLHSAVLARIRTEVFDVVAPAP*
Ga0182021_111957632	3300014502	Fen	VPYLSYARQLYKLSRQQGISGESFALVAKVLLDKWASRGLNPAVLAAIRTDVFDASAPTP
Ga0182021_121387341	3300014502	Fen	VSTSQYVPYLNFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPKILAKVRKDVFDVEAPK*
Ga0182021_122867361	3300014502	Fen	FGRQLWKLSRQQEISGESFAMAAQVLLDKWQARGLNPTVLAAIRTEVFDIGVPKP*
Ga0182021_123914752	3300014502	Fen	FGRQLWKLSRQQEISGESFAMAAQVLLDKWQARGLNPTVLAAIRTEVFDIGVPRT*
Ga0182021_129815831	3300014502	Fen	KTSRQQSISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDISAPSH*
Ga0182027_113972512	3300014839	Fen	SRQQSISGESFALSAQVLLDKWSARGLNPNVLAAIRTQVFDASAPTP*
Ga0187886_12530801	3300018018	Peatland	MYVPCLGYARQLYKLSRQQGISDESFALGAQVLLDKWAARGLNPAVIARIRAEVFDASAPTP
Ga0194113_103475681	3300020074	Freshwater Lake	VAYLDFARQLYKLSHTRGISGDSFALAADVLLQHWADRGLDPVVLARIRTQVFDVGEPTP
Ga0194110_107207182	3300020084	Freshwater Lake	ILYIPYLNYSRQLYKLSRKRNISGDSMKMAAQVLLEKWRLRGLDPKVLAAIRWDVFSIPA
Ga0224495_101935662	3300022208	Sediment	LNFGRQLYKLSRQQHISGESFAMAAQVLLDKWAARGCDPKVLAKIRKDVFDIAEPK
Ga0212124_103679722	3300022553	Freshwater	YLSYARQLYKLSRQQGISGESFAMVAKVLLEKWEARGLSPDVLAAIRTQVFDASAPTP
Ga0212121_1000439217	3300022556	Anoxic Lake Water	VPYLNFGRQLYKLSRQQFISGESLAMAAQVLLDKWAARGSDPEVLAKVRKDFSDVEPPRP
Ga0212121_100660879	3300022556	Anoxic Lake Water	TRQQNITGESFAMAAQVLLDKWAARGCDPDVLAVIRKEVFNVDAPKK
Ga0212121_101538401	3300022556	Anoxic Lake Water	LSYARQLYKLSRQQGISGESFALRAQVLLDKWTSRGLDAGVLARIRTEVFDSVAPTP
Ga0212121_102575702	3300022556	Anoxic Lake Water	SQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKP
Ga0212121_104071212	3300022556	Anoxic Lake Water	SQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPAVLAKIRTDVFDIPAPKS
Ga0236337_12253062	3300022653	Freshwater	VSREQSISGESFAMAAQVLLDKWSARGCDPKVLAKIRTDVFDIAAPKS
(restricted) Ga0233423_100131426	3300023177	Freshwater	VPYLNFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDISAPKP
(restricted) Ga0233423_100884802	3300023177	Freshwater	VPYLNFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDISAPKP
(restricted) Ga0233420_101260211	3300024300	Freshwater	AAMAKLSPEMLYKLSRQQSISGESFAMAAQVLLDKWAARGCDPKILAKVRKDVFDVEAPK
(restricted) Ga0233422_103618532	3300024333	Freshwater	VPYLNFGRQLYKMSRQQNISGESFAMAAQVLLDKWAARGCDPEILAKIRTGVFDIPAPKP
(restricted) Ga0233421_103538932	3300024341	Freshwater	NFGRQLYKLSRQQNISGESFAMAAQVLLDKWAARGCDPEILAKIRTGVFDIPAPKP
Ga0209610_10682254	3300025136	Anoxic Lake Water	QYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKA
Ga0209609_100459521	3300025145	Anoxic Lake Water	KLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDVPAPK
Ga0209609_100570554	3300025145	Anoxic Lake Water	KLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPK
Ga0208047_10248371	3300025279	Freshwater	NFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPKP
Ga0208047_10323951	3300025279	Freshwater	VSTSQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPDVLAKIRTDVFDIPAPRP
Ga0208047_10866571	3300025279	Freshwater	LTFAFCLLTCASDARYVAYLNFGRQLCKLTRQQNITGESFAMAAHVLLDKWAARGCDPDVLATIRKEVFNVDAPKK
Ga0208045_10677672	3300025306	Freshwater	YLSYARQLYKLSRQQGISGESFALVAKVLLEKWEARGLSPDVLAAIRTQVFDASAPTP
Ga0208828_10369182	3300025807	Freshwater	VSTSQYVPYLNFGRQLYKLSKQRGISGESFAMAAQVLLDKWAARGCDPEVLAKIRTDVFDIPAPKP
Ga0268279_11730801	3300028169	Saline Water	QGISGESFAMGAQVLLDKWAARGLDSAILARIRTEVFDVVAPTQ
Ga0268282_11064071	3300028276	Saline Water	VSTSQYVPYLNFGRQRYKLSRQQHISGESFAMAAQVLLDRWAARGCDPKVLAKIRKDVFDIDIPKP
Ga0268276_10342751	3300028299	Saline Water	LSYARQLYKLSRQQGISGESFAMVAKVLLDKWAARGLDPAVLAAIRTEVFDAVVPAP
Ga0310376_10407521	3300028916	Anaerobic Enrichment Culture	VKARQTLNSAGVHTVMYVPYLDYARQLYRLSRQKGISGESFALQAQVLLDKWANRGLAPAVLARIRTEVFDTGAPTP
Ga0272444_104443122	3300031111	Marine Sediment	YVPYLNFGRQLYKLSRQQNIQGESLAMAAQVLLDKWAARGCDPDVLAKIRTDVFSVQEPK
Ga0315291_107491261	3300031707	Sediment	MYVPYLSYARQLYKLSRQQGISGESFALAASVLLSKWAARGLDPDVLVAIRTDVFDIAPPTP
Ga0315280_101663861	3300031862	Sediment	GVSTSQYVPYLNFGRQLYKLSRQQHISGESFAMAAQVLFDKWAARGCDPKVLAKIRKDVFDIAEPK
Ga0315280_102102653	3300031862	Sediment	QQGISGESFALGAQVLLDKWANRGLDASILARIRTEVFDAVAPAP
Ga0315289_112767202	3300032046	Sediment	TVLYVSYLNFGRQLYKLTRKQSITGESFAMAAQVLLDKWDARGCDPKVLATIRKEVFNIDEPKK
Ga0315289_113955811	3300032046	Sediment	SRQQGISGESFAMAAQVLLDKWAARGCDPKVLAKIRTDVFDIAEPK
Ga0315284_101892634	3300032053	Sediment	RQQGISGESFAMAAQVLLDKWSARGCDPKVLAKIRTDVFDVAAPK
Ga0315281_111912271	3300032163	Sediment	YKLSRQQNISGESFAMAAQVLLDKWTARGCDPKVLAKIRTDVFDISAPK
Ga0315281_115380071	3300032163	Sediment	YARQLYKLSRQEGISGESFAMGAQVLLDKWANRGLDASILARIRTEVFDAVAPAP
Ga0315281_121504181	3300032163	Sediment	LYKLTRKQNITGESFAMAAQVLLDKWAARGCDPKVLATIRKEVFNIDAPKK
Ga0315283_112564621	3300032164	Sediment	LNASGVHTIMYVPYLSYARQLYKLSRQQGISGESFALVSKVLLDKWAARGLDAAVLARIRTEVFDVVAPAP
Ga0315268_126047501	3300032173	Sediment	HTIFYVAYLNYARQLYKLSRQQGISGESFALGAQVLLDKWTARGLDSAVLARIRTEVFDAAVPTT
Ga0315286_118973512	3300032342	Sediment	LSYARQLYKLSRQQGISGESFALVAKVLLDKWAARGLNPDALAAIRTQVFDTSVPTP
Ga0316622_1000507537	3300033416	Soil	RQERISDENFAMAAQVLLDKWAARGCDPEVLAKIRMDVFDIAAPA
Ga0316622_1000984055	3300033416	Soil	MEAKARQSLNSAGEQTIMYVPYLSIVRQFYEPSRQRGISGESFALRTQVLLEKWANRGLDATVPARD
Ga0316622_1001863031	3300033416	Soil	LSYGRQLYKLSRQREISGESLKMANKVLHDKWHNRGLDPVVLAAIAKDVFDIAPL
Ga0316622_1014310042	3300033416	Soil	PYLNFGRQLWKLSRQQEISGESFAMAAQVLLDKWAARGLNPTVLAAIRTEVFDIGEPKP
Ga0316622_1015292832	3300033416	Soil	KLSRQQGISGESFAMGAQVLLDKWANRGLNPAVLARIRTEVFDASAPTT
Ga0316626_111314872	3300033485	Soil	TMELWACDKRVKEVLSGKRVQTIQYVPYLSYGRQLYKLSRQRGISGESLKMANKVLHDKWHNRGLSESVLAAIAKDVFDIAPL
Ga0316626_119450731	3300033485	Soil	SGKGVQTIQFVPYLSYGRQLYKLSRQREISGESLKMANKVLHDKWHNRGLDPVVLAAIAKDVFDIAPL
Ga0316621_110826931	3300033488	Soil	YVQQIYSLSRQQRISGGSFAMSAQVLLGNWPTRGLDSAALAQIQTEVFYAVTPTP
Ga0316628_1021319112	3300033513	Soil	VPYLNFGRQLWKLSRQQEIAGESFAMAAQVLLDKWQARGLNPTILAAIRTEVFDIGAPSDGGR
Ga0316617_1017167022	3300033557	Soil	AAGVHTIFYVAYLNYARQLYKLSRQQGISGESFALQAQVLLDKWASRGLDAAVLARIRTEVFDAVAPGP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters