NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300015191

3300015191: Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-10 : a,b,c samples pooled, hydrological sediment from glacier outflow)



Overview

Basic Information
IMG/M Taxon OID3300015191 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121480 | Gp0191561 | Ga0167659
Sample NameArctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-10 : a,b,c samples pooled, hydrological sediment from glacier outflow)
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Bristol
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size219250082
Sequencing Scaffolds35
Novel Protein Genes35
Associated Families34

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae1
All Organisms → cellular organisms → Bacteria4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Mimasvirus → Cronobacter virus GAP32 → Cronobacter phage vB_CsaM_GAP321
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales2
Not Available8
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium calvum1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED1561
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root4041
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes4
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales1
All Organisms → cellular organisms → Bacteria → Proteobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMetagenomes Of Arctic Soils
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil → Metagenomes Of Arctic Soils

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → glacial feature → soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationStorglaci?ren, Tarfala, Sweden
CoordinatesLat. (o)67.904568Long. (o)18.607115Alt. (m)N/ADepth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001677Metagenome / Metatranscriptome654Y
F003763Metagenome / Metatranscriptome470Y
F005003Metagenome / Metatranscriptome415Y
F009579Metagenome / Metatranscriptome316Y
F010995Metagenome296Y
F014679Metagenome / Metatranscriptome261Y
F015992Metagenome / Metatranscriptome250Y
F017706Metagenome / Metatranscriptome239Y
F017937Metagenome / Metatranscriptome238Y
F023252Metagenome211Y
F025733Metagenome / Metatranscriptome200Y
F029582Metagenome / Metatranscriptome188Y
F031302Metagenome / Metatranscriptome183Y
F036309Metagenome170Y
F038220Metagenome / Metatranscriptome166Y
F038578Metagenome / Metatranscriptome165Y
F038916Metagenome165Y
F040397Metagenome162Y
F042189Metagenome158Y
F045483Metagenome152N
F050030Metagenome / Metatranscriptome146Y
F051096Metagenome144Y
F055453Metagenome138Y
F057939Metagenome135Y
F058120Metagenome / Metatranscriptome135Y
F065250Metagenome / Metatranscriptome128Y
F071209Metagenome / Metatranscriptome122Y
F073995Metagenome / Metatranscriptome120Y
F074429Metagenome119Y
F078676Metagenome / Metatranscriptome116Y
F081263Metagenome / Metatranscriptome114Y
F097281Metagenome / Metatranscriptome104Y
F101135Metagenome102Y
F103943Metagenome / Metatranscriptome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0167659_1000012All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae49192Open in IMG/M
Ga0167659_1002055All Organisms → cellular organisms → Bacteria7797Open in IMG/M
Ga0167659_1002102All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Mimasvirus → Cronobacter virus GAP32 → Cronobacter phage vB_CsaM_GAP327719Open in IMG/M
Ga0167659_1002433All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales7132Open in IMG/M
Ga0167659_1003001Not Available6254Open in IMG/M
Ga0167659_1003260All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Intrasporangium → Intrasporangium calvum5881Open in IMG/M
Ga0167659_1003558All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes5556Open in IMG/M
Ga0167659_1004403All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium TMED1564777Open in IMG/M
Ga0167659_1005438Not Available4119Open in IMG/M
Ga0167659_1008294All Organisms → cellular organisms → Bacteria2951Open in IMG/M
Ga0167659_1011472All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Rhizobacter → unclassified Rhizobacter → Rhizobacter sp. Root4042295Open in IMG/M
Ga0167659_1014444All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1917Open in IMG/M
Ga0167659_1017102All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Phycicoccus → unclassified Phycicoccus → Phycicoccus sp.1693Open in IMG/M
Ga0167659_1019999All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1518Open in IMG/M
Ga0167659_1020958All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1471Open in IMG/M
Ga0167659_1024710Not Available1312Open in IMG/M
Ga0167659_1028171Not Available1198Open in IMG/M
Ga0167659_1029633All Organisms → cellular organisms → Bacteria1158Open in IMG/M
Ga0167659_1033586All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1065Open in IMG/M
Ga0167659_1035868All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1019Open in IMG/M
Ga0167659_1040943All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes932Open in IMG/M
Ga0167659_1041100All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales929Open in IMG/M
Ga0167659_1042875All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes903Open in IMG/M
Ga0167659_1050883Not Available803Open in IMG/M
Ga0167659_1051041All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium801Open in IMG/M
Ga0167659_1055665All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes752Open in IMG/M
Ga0167659_1060245All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes710Open in IMG/M
Ga0167659_1060445All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium708Open in IMG/M
Ga0167659_1066799Not Available658Open in IMG/M
Ga0167659_1074828All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales606Open in IMG/M
Ga0167659_1075756All Organisms → cellular organisms → Bacteria → Proteobacteria600Open in IMG/M
Ga0167659_1076149All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes597Open in IMG/M
Ga0167659_1079897All Organisms → cellular organisms → Bacteria576Open in IMG/M
Ga0167659_1085411Not Available547Open in IMG/M
Ga0167659_1086399Not Available543Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0167659_1000012Ga0167659_100001244F010995MASQAQRPVVILYEHALLGEGIAKYLRAQTGVEATVAPSHHPEAVRLALALDPAVVIFESSNPFQQYDLTTLAPHAVLIDVSAVITRGSAVAPCAAGFEQILQAVRDSSAAAVPGEGRPGETCTVVSRTRTLAAPTR*
Ga0167659_1002055Ga0167659_10020553F055453MKIKEILKESPTDLVARFYKEASAEADRFYNLEDVKYKEKNAKYYDENFKGWFKNDIVPVFEKPSTKPQPEYRPKPVGSELQSPGYRGLQYALAAAGLPYNHGVQKYQPNAPLAPSAEMDACRNTNSN*
Ga0167659_1002102Ga0167659_10021023F058120MTNNTGSLLLESIRSKDAQQALTQVQQFRDNMRNVTVGADYVMWITEPVNLTSVHKALAEDLNVPPRLLAIRRSSMNRTQKAVLLMQAIENSIKRVHTL*
Ga0167659_1002433Ga0167659_10024333F029582MLARSPQRPDPEAQRNASPARRGSLRWVREVLGRSLRLEQPRQATQPAGDAQADTPLSLVMQQRAELGARLLVHDPATQVVRHLFIVHDELRNGGWTAVEALPLAVIGRAVSEAEILAVDEPSQLLATIIDALRAIRIAADARATRAAHDALEAKWEVPQMPEVSDTNFDEYELMERSWAGTVPSGLREGVHNTR*
Ga0167659_1003001Ga0167659_100300110F097281MANTINKTPPVNLKEQNAIHSFRVVIRDREHFYRLVKWLNDNVGKGADKWTMDGRVLKAIKQGKTVNPNIHIYRTDFDTASALYLSLI*
Ga0167659_1003260Ga0167659_10032603F010995VTTRLQHCVVIVYEHALLGEGIAKYLRAQIGVEATLASTSDPQAVRSALTLGPAVVIFESSDPFEKFGLTTLAPHAVLIDVSTVVSRGSVLTPSVAGLEQILQAVRDSGCAVTEPSGTTRSADISTAPAR*
Ga0167659_1003558Ga0167659_10035585F101135MKDITIEQYCDGWAVQVDDKRVSWNHNDENMGTVGIKELLEYLGHNVTVEECY*
Ga0167659_1004403Ga0167659_10044035F074429VGDARMSKKIPNFSIDKALGRIMRPSVFDRIVKEIDAKEIPAKYVEHILVQYYDGNVVELSGDELTHPIPMNKDASWAEMEESFKKMRDVKVFISTDKLEEDINAMVEDYLGRFC*
Ga0167659_1005438Ga0167659_10054386F078676MVQKIHGSATAMQNLTADLAYYVCYAASPGAFTDPNPNPPTSQELTRLLNIQVTGQPLDESQKNFEVLLMSIGLRAMPVVLSDPQAVFQLQDYTLELAGEGYVWKFAVERGVQFYNFTPYGSPGPVGLLVDDLDGVILPSGVRVTTVTGSPTGWAKNIAFTRMESI*
Ga0167659_1008294Ga0167659_10082943F025733MHAEMRQIAFSVIRIGALVALAMLLILGLLPAVLAVQAAST*
Ga0167659_1011472Ga0167659_10114722F038220MNDVDRLVQQIHELQGSMLAMECFVNSLTEVLSEDARVVVQALYASESAAFRAALMASTAPEATVSAFERDVQRGLGVLGEPADPSAT*
Ga0167659_1014444Ga0167659_10144441F065250MAPANTKTPTASPTEMPALAQMMREQLISTLQQGQQLSIDAAQTWVKAVSVLPAMDLPKLPGLPAMPAVETATLFAFDVAADLLNAQREYALQLTHALSPEKTS*
Ga0167659_1017102Ga0167659_10171022F051096MTDHPTPTPSSATSRANEQDAVVQACVHIDAAAYQLEAAANGDVFSSLLGLAGLLALIRGGINPTLRAVVDPGDRLGPIAHVDRALFLLEGAHPSIAPADLLVWTQRLADLRDALPDALLAAWAGRP*
Ga0167659_1019999Ga0167659_10199992F031302MVSSAPFGARTGEPRIQGDLRDVAHGVHQEFDEKLDSRAVDECLSRVAAEFTDAKVRSFVPLLVRRYVSDELQKRLEHA*
Ga0167659_1020958Ga0167659_10209584F081263MTQVTRVRFAYPQAADRNLAVDRSFAVGVRGATRISMHTSATSNAPAAKDVSYLRSRRPPV*
Ga0167659_1024710Ga0167659_10247102F014679METLDTLDSADWRNRCAQRIAEIDQDLSRVEAERLAKDVYAFERTRAMSPEAAAEFVAVEMSRPDRAPFERRATAR*
Ga0167659_1028171Ga0167659_10281712F017937MKLIAKVIESMLTKDATQQWTGQTSAVQSRDVWGWGGFADQTPTIL*
Ga0167659_1029633Ga0167659_10296333F023252MIALLFFLQTAATTLAAPIPTFIVVRDGGAIASVPVTIDGGQPSVRADALMRAMRGMLITSTNLHYTLALPRARIDLIDGIPFAKRDTLTIPLTRAPQVRGGQLYLPFQFVTDVIPRYAGGYVYDAALSELRTVTAVANRPATPIQSSTSSPVRAATTTPVAARKPVTQQ
Ga0167659_1033586Ga0167659_10335863F038578MSDELVVLRGGSRDGESTTVDVGVRRILAASDAPGLLDVYEANGETEQLRGNDELAFVFVHAG
Ga0167659_1035868Ga0167659_10358681F057939MQLPSTNLESIRRDIAERLRPTCANMSEDEFEKMVARMALIEWKHLNDATPTSQMLSR*
Ga0167659_1040943Ga0167659_10409431F003763LTRPDGPTQELSTLLRKVAREAHDQDIKPEQLIIIFKQLWNSLAESLRPQSADQYELVRQRLVTLCIRAYYAE*
Ga0167659_1041100Ga0167659_10411003F103943QYTADVCRTDNGGTTQAPDAVGAPTACRGTDAAPVSDAVHLYLTTNPLAGTGGGDTFMQPTSASSTNGLHLTAPLVIAGTAKSKFSVNATGKVGDDGVSCGMNPPVFGFQKLP*
Ga0167659_1042875Ga0167659_10428752F050030MPKPPDDDPLAAFELPPDLMSSTFEHAISDHADLAHEQGHAVAAALQRLLAGSTVEYGFPGMVTACLKSGALAHCGGPSIGWMIDVQRKPGGSPVTVDVNVPSDETDPVRLAELLAKAL
Ga0167659_1050883Ga0167659_10508831F038916MNHMHINPSDARDVLDVLGYHNHDGECECGDFKRNLITAIICAGPEDRARLALGFPSLVAAIRSQSSNPASIEYLEGIARSYERPSLQG*
Ga0167659_1051041Ga0167659_10510411F001677MSRITIAASLLLAIPSSSYAQQAGTFTASTDTKPVTEEIFETKDAAALTVGLAPLSKSQLPNGDREVRIWYSSFGNPQYLVIIRQTGGTTSGRLLLRWDQYYEISPVLADTRVDAFVSSAYDCGQISKRDSKFGDDRWISSVCEANLKGTPDWKAFLSEVESHALPQATSGAPVQDQADQKTWGITVERKSGATYGVSHYQTAMTFGAPEPGRGLKL
Ga0167659_1055665Ga0167659_10556651F036309YDTIIVKHVTVAAKKPVSKPVAKPVVQQEIVLPTPEFINQPYYFDKAGNKLIKLENANALMVTKKKTLGLKGAKQFLSMDATSSKIRFVAKKDIVFFIKTSGDVIDLTSYIKLYQFIPVDQKREVTITSKEGLITNKDEAKGRLLNFSVKMISKDNYQIQLPEQLEAGEYGFVWVKNMELKEFTVFAFGIDWKSSD*
Ga0167659_1060245Ga0167659_10602452F017706MKKTIAVIAFLTVPALASAQAGLNRIQFLALQQELRDQGCGVTNVDGRYGPSTRRAIATCAKKFNTANNAAALLAAMNIGFGPNDTPPAAPTGGGSMSMGAGGMKSEAKAEGESMKTEHKEHVAAMKPHHKAMKKMKAAADTMKK*
Ga0167659_1060445Ga0167659_10604451F015992NPQILTSFGMESASGSLSSSIHAAMTNPIPPVSEHYSPSLLPRDTFRTLIALAIIALTIGGWIYVMMIPVDRFALSSQTRLWWIEQIVSFVLALVCIGIVLRKRSFLTPAFWLTVYSLVFDVMRWIFEFKEGQLRLPIALILYALFIWRLQLARRTVAGERHAVAV*
Ga0167659_1066799Ga0167659_10667991F045483MVVMTEARRQSIPTAKPRRLVSGLSVLGLSLFVLTGCAVPGGYDVNSLHLLPEAALVYPGSADVHTNDYGGSPGNYVSKGAVAATGKSATTVHTQLEVLAYFSKTLAADGWTQIAQDDTATTPEGFRAKDISWVKNSLHLSYLVRTWTVGETTQYFTLLSANE*
Ga0167659_1074828Ga0167659_10748281F042189MPELYEVLLVDAGTRWHAGWLVDDETETDLLLTDAERKVLLFGSRAALEHHAQEHGLELHDDLPDEVDLDLGGWLSTGSPAPDLAEVSELWHLLYDDPVAGKALAGEELGEAYDDLVEELDDWFAEHGSTARAALRDAVRRLRGAFTPA*
Ga0167659_1075756Ga0167659_10757562F005003TCRLDDADIDYVRNTAEWIARCVARTLEMNAGANADEVVPLVVDMSTRGRWRLMKPETVGEQLALPIPQPLG*
Ga0167659_1076149Ga0167659_10761491F040397DPVTGALHGTLPANSKLAEVKFTEGPTIDRSLPVDMSKSPPIPIQHGNQTFNIQSERGVITMVETTPGAASKAAPRVVGAGLALAATAGGRYIVALAPRGRPDPNEPAVEPVVYTVTW*
Ga0167659_1079897Ga0167659_10798971F073995LFKIARRVGIAFGSFVIAWLAVSLVAGWLFGSGNILVWVFAAVVGAGVYLDILRRDRRVG
Ga0167659_1085411Ga0167659_10854111F071209EKQDLYVPMNELIVNKENHWTFTHINLPYCEIAKKQIVLWCVTNLQGRWTMLGGNKFGFESGEDATVFRMQFGF*
Ga0167659_1086399Ga0167659_10863992F009579MSEVELAFAFLSGVVTGILLDRWLLPPLVDLWIDRLRRHGR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.