NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300013793

3300013793: Wastewater microbial communities from municipal sewage treatment plant in Nanjing, China - WX_AS_meta



Overview

Basic Information
IMG/M Taxon OID3300013793 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0118583 | Gp0137236 | Ga0119894
Sample NameWastewater microbial communities from municipal sewage treatment plant in Nanjing, China - WX_AS_meta
Sequencing StatusPermanent Draft
Sequencing CenterNanjing University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size83325715
Sequencing Scaffolds15
Novel Protein Genes18
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila1
Not Available5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas → Aureimonas frigidaquae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Lillamyvirus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameWastewater Microbial Communities From Municipal Sewage Treatment Plants In Nanjing, China
TypeEngineered
TaxonomyEngineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Wastewater → Wastewater Microbial Communities From Municipal Sewage Treatment Plants In Nanjing, China

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationChina: Nanjing
CoordinatesLat. (o)N/ALong. (o)N/AAlt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003622Metagenome / Metatranscriptome476Y
F007000Metagenome / Metatranscriptome360Y
F007965Metagenome / Metatranscriptome341Y
F009328Metagenome / Metatranscriptome319Y
F010914Metagenome / Metatranscriptome297Y
F021533Metagenome / Metatranscriptome218Y
F024972Metagenome / Metatranscriptome203Y
F025749Metagenome200Y
F034766Metagenome / Metatranscriptome174Y
F048673Metagenome / Metatranscriptome148Y
F064355Metagenome / Metatranscriptome128Y
F075867Metagenome / Metatranscriptome118N
F076004Metagenome / Metatranscriptome118N
F082381Metagenome113Y
F091594Metagenome / Metatranscriptome107Y
F093751Metagenome106N
F096552Metagenome / Metatranscriptome104Y
F098779Metagenome103Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0119894_1000440All Organisms → cellular organisms → Bacteria5146Open in IMG/M
Ga0119894_1001294All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2880Open in IMG/M
Ga0119894_1003575All Organisms → Viruses → Predicted Viral1633Open in IMG/M
Ga0119894_1004692All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1414Open in IMG/M
Ga0119894_1007634All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Caldimonas → Caldimonas tepidiphila1109Open in IMG/M
Ga0119894_1008689Not Available1042Open in IMG/M
Ga0119894_1010230Not Available968Open in IMG/M
Ga0119894_1015167All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage802Open in IMG/M
Ga0119894_1017313Not Available755Open in IMG/M
Ga0119894_1017620All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Aurantimonadaceae → Aureimonas → Aureimonas frigidaquae749Open in IMG/M
Ga0119894_1018914All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae724Open in IMG/M
Ga0119894_1021237All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes686Open in IMG/M
Ga0119894_1021533Not Available681Open in IMG/M
Ga0119894_1024566Not Available641Open in IMG/M
Ga0119894_1033877All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Lillamyvirus548Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0119894_1000440Ga0119894_10004406F096552MDTDSDCFVYDEFIVKIKRRSFMKKKKVFVAASTVLILSLLAACSALKPTPVPTQTPQVLPSTGVQYHFVTNRLLIPTSQALTQEFALNVDGDAQQRADNLFGNLLSLLTSAAPSLELQATLDQVISSGQLVSL
Ga0119894_1001294Ga0119894_10012941F048673MRTLATLLILVAIAASQPHHWLAVLMAAIAHCIGK*
Ga0119894_1002066Ga0119894_10020663F064355MKNKFSIFNFKLFSYLRQLLTNEYPDSKPDAEKRKVAVENNLRWQDDGGPAVENTRPIEQAVE*
Ga0119894_1003575Ga0119894_10035754F009328MMDGLCADGYWCVVCGRFLEAEYGVIVHDNVPHPKDMTFDDEDKPQ*
Ga0119894_1003575Ga0119894_10035755F091594MSNGQGITHYCLGNGALKCDGCQQEKNWQTLNQMPDALRKSLQSQTQRIDDTDCILSGRPWYVGA*
Ga0119894_1004692Ga0119894_10046921F076004MDNDNAVALSNRNGIQTFVQNIEFDRDGRHYDEPCLLMCRGFMGVKNMFVFPLCDAWTVREPEFFKATMQDAAATLFVSPTKNDEHVIGDMILHDIDTIIAWRPDDDATHDHALMQKEVERTGLLLKVNGQTLVDAR*
Ga0119894_1007634Ga0119894_10076343F021533MKTIAATVINEVITPTETLPNDAKLIVFNGTEYVIYEEGDELPPEPIYDEQL*
Ga0119894_1008689Ga0119894_10086892F082381LDKIKKGGKRIGSGRKKAEYQTKTIAFRVRIEWVEVIKSMVKDKVSELSQNSS*
Ga0119894_1010230Ga0119894_10102302F098779IKLINLLKEIKNFKEIELNTSFYQSQDDLERGGDGDGGQTVWKPEFKNGLKANQQNFTSSGKPAIPVQKIKFKMLDTMSDTFEGIPYINIKFKKPLNEVFIDLDDYEPEEFGVKYFKKFDKIVKSKQNPTLQDVSELIDLKNKDLSFYGCYVNEIKPNEIIKISKEN*
Ga0119894_1015167Ga0119894_10151671F025749MTIREIRRVLFETEKYTVIGADEMANKESRDFLYAKDNQDETMNVIDNGSHLLIWK*
Ga0119894_1015167Ga0119894_10151672F007965MEVKRGGKRKGAGRKKADYKTKTIAFRVRIEFDEPIKKMDKDYVSERLKGDA*
Ga0119894_1017313Ga0119894_10173132F075867MNPALKPSSKHFLQYDAATFENEGFKTLNGRISQLALEPRFWCVSVKVITENFEGTEKIKDHFNFKTSERCKLSDLREQVKKEVLDKDDYLPVCTQCLVTARVMM*
Ga0119894_1017620Ga0119894_10176202F034766MPDAPRKYYLITPAQLEAARQHWPQVSDKTWVLTLRRGEEPLVLNRPPHKGVGFSAFKVPDDTRDGMAYRKDVDVLIL
Ga0119894_1018914Ga0119894_10189142F010914MIYKILVEQDGKFIDSGETVECEFEQTQTIVDGLQSEHGCCCALESVSE*
Ga0119894_1021237Ga0119894_10212371F007000GTAALVFAAHSIRSRTMHILHLAALGSIIVAAPALAQQPASVPRAIALPDTMGANFSVADSLTGASAPGDYDFLIGTWRFSFQPRRRDGTFSPAFTGHWVFAKKETGGQGGLLEDHWRPDDPSSTWDAGTWTYRAYNPERKLWEMEGINTNVGAWQPGLMWSAGDSRVLIEWYGSMLVRFRYFAIQPDHFLWRADATFDRGKSWIRDYWTMEAHRISR*
Ga0119894_1021533Ga0119894_10215332F093751MTVSDMVKALGTPEYVAFSLGVSRRTIFYWMSSNQINRGNRLDFLKMLKKAGYKMTLKDLNDLQPTKREVLK*
Ga0119894_1024566Ga0119894_10245663F024972MKITKVTKPYFETEGERVYFFEPLDEEMTLTELQELMDEHEKFVLETIQKMKKE
Ga0119894_1033877Ga0119894_10338772F003622MRTYNKELEIIASDILEQNAEATGNENKPNYTNREFMNCLIIFQTALMDKMYDNQEYDKMSIEDRSNMAVKCGLDLRKLIHTYTGLDTHQIENFL*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.