Sample 3300013046

3300013046: Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaT (Metagenome Metatranscriptome)

Overview

Basic Information
IMG/M Taxon OID	3300013046 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114821 \| Gp0119656 \| Ga0079038
Sample Name	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaT (Metagenome Metatranscriptome)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	22198236
Sequencing Scaffolds	65
Novel Protein Genes	76
Associated Families	43

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	55
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	2
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls
Type	Environmental
Taxonomy	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands → Freshwater Wetland Microbial Communities From Ohio, Usa, Analyzing The Effect Of Biotic And Abiotic Controls

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	freshwater biome → wetland area → mud
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline)

Location Information
Location	USA: Ohio, Lake Erie, Old Woman Creek
Coordinates	Lat. (^o)	41.384	Long. (^o)	-82.513	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000203	Metagenome / Metatranscriptome	1619	Y
F000344	Metagenome / Metatranscriptome	1257	Y
F000734	Metagenome / Metatranscriptome	915	Y
F000817	Metagenome / Metatranscriptome	879	Y
F001024	Metagenome / Metatranscriptome	803	Y
F001233	Metagenome / Metatranscriptome	741	Y
F001346	Metagenome / Metatranscriptome	718	Y
F003269	Metagenome / Metatranscriptome	496	Y
F004925	Metagenome / Metatranscriptome	418	Y
F006508	Metagenome / Metatranscriptome	371	Y
F011154	Metagenome / Metatranscriptome	294	Y
F011719	Metagenome / Metatranscriptome	288	Y
F016502	Metagenome / Metatranscriptome	246	Y
F016975	Metagenome / Metatranscriptome	243	Y
F018396	Metagenome / Metatranscriptome	235	Y
F018726	Metagenome / Metatranscriptome	233	Y
F020183	Metagenome / Metatranscriptome	225	Y
F020700	Metagenome / Metatranscriptome	222	Y
F024800	Metagenome / Metatranscriptome	204	Y
F025295	Metagenome / Metatranscriptome	202	Y
F026599	Metagenome / Metatranscriptome	197	Y
F035116	Metagenome / Metatranscriptome	173	Y
F035541	Metagenome / Metatranscriptome	172	Y
F037756	Metagenome / Metatranscriptome	167	Y
F041496	Metagenome / Metatranscriptome	160	Y
F044534	Metagenome / Metatranscriptome	154	Y
F045132	Metagenome / Metatranscriptome	153	Y
F049072	Metagenome / Metatranscriptome	147	Y
F052615	Metagenome / Metatranscriptome	142	Y
F054425	Metagenome / Metatranscriptome	140	Y
F055278	Metagenome / Metatranscriptome	139	Y
F068858	Metagenome / Metatranscriptome	124	Y
F081506	Metagenome / Metatranscriptome	114	N
F081897	Metagenome / Metatranscriptome	114	Y
F081898	Metagenome / Metatranscriptome	114	Y
F082737	Metagenome / Metatranscriptome	113	Y
F085747	Metagenome / Metatranscriptome	111	N
F087250	Metagenome / Metatranscriptome	110	Y
F092888	Metagenome / Metatranscriptome	107	Y
F094695	Metagenome / Metatranscriptome	105	Y
F095697	Metagenome / Metatranscriptome	105	N
F096691	Metagenome / Metatranscriptome	104	N
F099499	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0079038_100206	Not Available	610	Open in IMG/M
Ga0079038_100746	Not Available	686	Open in IMG/M
Ga0079038_101822	Not Available	588	Open in IMG/M
Ga0079038_102572	Not Available	778	Open in IMG/M
Ga0079038_102821	Not Available	962	Open in IMG/M
Ga0079038_103196	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	539	Open in IMG/M
Ga0079038_103560	Not Available	748	Open in IMG/M
Ga0079038_104197	Not Available	799	Open in IMG/M
Ga0079038_104319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	665	Open in IMG/M
Ga0079038_104415	Not Available	580	Open in IMG/M
Ga0079038_104849	Not Available	655	Open in IMG/M
Ga0079038_105268	Not Available	582	Open in IMG/M
Ga0079038_105673	Not Available	695	Open in IMG/M
Ga0079038_105816	Not Available	518	Open in IMG/M
Ga0079038_105925	Not Available	1020	Open in IMG/M
Ga0079038_106417	Not Available	503	Open in IMG/M
Ga0079038_107375	Not Available	504	Open in IMG/M
Ga0079038_108573	Not Available	950	Open in IMG/M
Ga0079038_110878	Not Available	775	Open in IMG/M
Ga0079038_111188	Not Available	810	Open in IMG/M
Ga0079038_111975	Not Available	621	Open in IMG/M
Ga0079038_114240	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
Ga0079038_114546	Not Available	895	Open in IMG/M
Ga0079038_116461	All Organisms → Viruses → Riboviria → Orthornavirae → Lenarviricota → Leviviricetes	755	Open in IMG/M
Ga0079038_117100	Not Available	578	Open in IMG/M
Ga0079038_117803	Not Available	1057	Open in IMG/M
Ga0079038_118072	Not Available	735	Open in IMG/M
Ga0079038_118846	Not Available	856	Open in IMG/M
Ga0079038_120671	Not Available	607	Open in IMG/M
Ga0079038_120784	Not Available	789	Open in IMG/M
Ga0079038_120960	Not Available	572	Open in IMG/M
Ga0079038_122495	Not Available	569	Open in IMG/M
Ga0079038_122920	Not Available	567	Open in IMG/M
Ga0079038_124285	Not Available	805	Open in IMG/M
Ga0079038_124613	Not Available	722	Open in IMG/M
Ga0079038_124991	Not Available	803	Open in IMG/M
Ga0079038_125838	Not Available	845	Open in IMG/M
Ga0079038_126666	Not Available	810	Open in IMG/M
Ga0079038_128114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei	575	Open in IMG/M
Ga0079038_131376	Not Available	793	Open in IMG/M
Ga0079038_132278	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	642	Open in IMG/M
Ga0079038_132370	Not Available	545	Open in IMG/M
Ga0079038_132854	Not Available	553	Open in IMG/M
Ga0079038_133870	Not Available	925	Open in IMG/M
Ga0079038_135231	Not Available	801	Open in IMG/M
Ga0079038_135419	Not Available	754	Open in IMG/M
Ga0079038_135920	Not Available	785	Open in IMG/M
Ga0079038_137696	Not Available	505	Open in IMG/M
Ga0079038_137853	Not Available	578	Open in IMG/M
Ga0079038_138420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	624	Open in IMG/M
Ga0079038_138531	Not Available	1032	Open in IMG/M
Ga0079038_138745	Not Available	930	Open in IMG/M
Ga0079038_139208	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila	607	Open in IMG/M
Ga0079038_139561	Not Available	697	Open in IMG/M
Ga0079038_139820	Not Available	666	Open in IMG/M
Ga0079038_141294	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	794	Open in IMG/M
Ga0079038_141343	Not Available	675	Open in IMG/M
Ga0079038_142319	All Organisms → cellular organisms → Archaea → Asgard group → Candidatus Lokiarchaeota → unclassified Lokiarchaeota → Candidatus Lokiarchaeota archaeon	778	Open in IMG/M
Ga0079038_145027	Not Available	808	Open in IMG/M
Ga0079038_145492	Not Available	668	Open in IMG/M
Ga0079038_147919	Not Available	777	Open in IMG/M
Ga0079038_148308	Not Available	793	Open in IMG/M
Ga0079038_149979	Not Available	502	Open in IMG/M
Ga0079038_151611	Not Available	702	Open in IMG/M
Ga0079038_152516	Not Available	579	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0079038_100206	Ga0079038_1002061	F035116	VSLPGPQAGGATTSPSGLRGLTQQFSDRKALDGPAMRPDTPLAVENSVGKPAAKQAPNAGMGKRAWRTP
Ga0079038_100746	Ga0079038_1007461	F052615	VAPGQRTAKSGGRPGAKRSRRGAEITNVSRPGSQAGGATTSRSELRGLTQEFSDRKALDGPAMRPTTPLAVENG
Ga0079038_101822	Ga0079038_1018221	F001346	MKPFRKAGDRQNAVAGLWMKGNLRGKRRDPWHWANALPKAAADPALSGGDATTESQTCLNLVRKPVAQP
Ga0079038_102572	Ga0079038_1025722	F025295	ETGPGEAAELLRRSGAHIPETLKKITRKVNFWIRN*
Ga0079038_102821	Ga0079038_1028212	F041496	MNWPGLHDPTACASRFSQPPGAFIRPEPPGLVSCRIRSWDHPPELSSSRAAARCFQRRSPRGVQTAFRVFLRARVRFSVQLFKLKTEHVALLGIFPSKVLTLSALARPSSSLPSCGYAAGRKRTTTLHFRVSHAESPAHLSRDCRPSWGFWPCGRHVRSNNAGSWSHLRRRPGYVTAPSPALL*
Ga0079038_103196	Ga0079038_1031961	F044534	GIYHQFLWPESCPVSSHTNQELCGKMRLETALSRVRPTGSFDPCADAVTPEGFGCYCADQNAVTVPGGPTPPEGPARRTSGARKGAGTAGSERIWQNS*
Ga0079038_103560	Ga0079038_1035601	F052615	VALGQRTVKSGGRPGAKWSRRAKEVIDVSWSGSQAGGATISPSELKSLTRQFSDRKALDGPAMRPGTPLAVENGVGKL
Ga0079038_104197	Ga0079038_1041971	F081897	WEFAKLSFPCWHWAPFQAASFPTLFSTASGVFGLVAGPSRALRSLDY*
Ga0079038_104319	Ga0079038_1043191	F011719	AAAVNRLKLNVSEIIPGDWGKAGSGWLAQPLLSRIARSGSGGRIHQFLWRRSRAVSTREKGTERRGAMRNRSESSQVARAGFEPERIAVTQRVSGCYCASARAGGSGGLRKEVSQMKDAERRDKVSVRTGKDTRPRQGPLKPSETPAILQTIPLACGQKAT*
Ga0079038_104415	Ga0079038_1044152	F006508	VAGANAPPKAVADPGQVVKTRMASRRRVSTWFASRWRNHQPKRAEKPHSKSNAARRWTAL
Ga0079038_104849	Ga0079038_1048491	F006508	VALANAPSKAVADQSQLVKTRRRNYRRVLTWFASRWRNHQPKRAEKPHSKF
Ga0079038_105268	Ga0079038_1052681	F082737	MPGLSPSHPARRTSLRFAPRLRNFSVGASLLSGTPASLPVRSQNLEADFHSPTTTSLLPDRHGGVRVPALPLQLCDTISVGPVRFDLHPRPVSRTAWGLLQSKPVAFRSCATPACLVESSLPFRVSTLPDQSTRSRWPTGNLLPGTPDLPSLPTGGRIRYQHQRIIVPAPLRPFQLAVP*
Ga0079038_105673	Ga0079038_1056731	F052615	VAPGQRAVRSGGRPGAKWSRRAEKVTDVSWSGSQAGGATTSPSELKSLTQQFSDREALDGPAMRPETPLAVENGVGKLAAWKGA*
Ga0079038_105816	Ga0079038_1058161	F026599	LSEGVVRMAKVYCYCPECKKMLTQVLSSFECLATWDKAEDYYVPGNDCKLVNRCPDCGTLTKEKERKIHKVLKRETGEEDIRPSHFKRKPKALRHAV*
Ga0079038_105925	Ga0079038_1059251	F055278	CPLRPSEFSGLLLDPHSLPTRVVLLWNRVPVQSIHPLKYHRYCFGDPAVPLVLTSAVRSSFSGLDRRLFRLPITSSRRASPSSRVLPSNTYPAAATAESSHGLLLPTALEESEVHCSRAVPTRYVPPSGFGYPLDGFLPRIPCRFCFAPAALLGFSLRRFPLPRGFASVSAGKDPHTVDLQVTPAPKCRTGRAGLGFWGHTSRKCLATDGCLSRRSPAPPLGFIPPGRSRESLGQDFSRSPLTRFADPAIAHRIHRRPRVSIGSRLASTSLAPECTPVEATLLGFPHRPHPDRSNLAPPGLLSSPHTGSHITADSPVLLGRWPALPESIRIGLRCRASR
Ga0079038_106417	Ga0079038_1064171	F001346	VKTSRSVGGVKNDTADLWTQGNLRVKRRDPWPRANALPEAAADPELSGEDAEQKPQTCLDLVRKPVAQPPVEAS*
Ga0079038_107375	Ga0079038_1073751	F041496	WGHPSELSSSRAAVRCFQRLSPLGVLTAFRVFLRARVRHSAQRFRLKTERVALLGLFPSRVLPPSVLNRSSPVLPSCGYPIGCKQPNGLHFRVSRTESTACLSRDRRPSWGLWPSGRHARSSSARILESPPKAPGVRHRPLVGPSSNPCSTLPQPDITSLSASPPQR
Ga0079038_108573	Ga0079038_1085731	F055278	LLWNRVLVQSIRPLKYHRYCFGDPALPLVLTSAVRFSFSGLDRRLFRLPIASSRRASPSFRVLPSNSYPAATATGSSHGLLLPTALEELEVHCSRASPARYVPPSGFGYPLGGLLPRIPCRFCFTPAALLGFTLRRFPLPKGFRGVSAGTNPHTVNRRVTPAPECRTGHEGLGFWVHTFRKCLVIDGFLSRRSPAPPLGFTPPGSSRESFDQDFSQSPLTRFADPTITRRAHRRPRVSIGFRLAPPCRAPECTVAGTTLMGFPHRPHPDHSNSAPPGLLSSPRTGSHITADSPVLFGR*
Ga0079038_110878	Ga0079038_1108781	F054425	LSHADIRRLPGCRLPDAILHGKRSYRPRSRAAQRVADAELSSEAFQLASTGDCGTGLRTKPRHVCDSAPRLGHLARGQPPLLAVRSPRATGLAS*
Ga0079038_111188	Ga0079038_1111881	F001346	LNREGHAASAGPVKTFQKVGDVKNDTADLWTKGNLRVKRRDPWHRANALSRAAADPALIGEDADKKTQTCLYLVRKPVAQPPVQAS*
Ga0079038_111975	Ga0079038_1119752	F000344	MRPKSAHAALSGVGEHTARESESAQCCAAGKERVANAH
Ga0079038_114240	Ga0079038_1142402	F018396	MRRSWWRQWFEGRAADNADALQVLLTRACRQETALAWHLVDRARAARFAPHRLSLERMAERERQNAHALAREIEGGATLTAVACPAHRVGTLTAPKLIQDLAEVEDLYTLYRQARWLTPDTTLRDTLEEMAAEEARSAHAIRRIIGTMDSYVTDRPS*
Ga0079038_114546	Ga0079038_1145463	F095697	MILLADGWHTISRRSFTYGSFTIKARDGQSSVELADAVWWEEGDDDLVVVPRSSVLALKRRACESRVES*
Ga0079038_115758	Ga0079038_1157581	F000203	TLSFPVPALGASWAAGFPTLFSTASGVVGLVAGPFSALRSLNC*
Ga0079038_116461	Ga0079038_1164612	F018726	MLVDPVTVLAAAPTPQLVLTIVKQDGYGSERTDTGGNGYTVVTNHSKPKGGGDRHYVQMTQTVNATDPYSGAVRKVTASVSIAISRPSIGFTDAAMVALAVALRDYVWDSEVTPAKLIQFQS*
Ga0079038_116971	Ga0079038_1169711	F000203	HALFPTLALGATLAASFPTLFSAASGVSGLVAGPFNASRSLNY*
Ga0079038_117100	Ga0079038_1171001	F087250	AGPQGAVAEAEFTSSSGGVRALSVNAKKELGGEER*
Ga0079038_117100	Ga0079038_1171002	F006508	VVLANAPSKAVADQSQVVKTWRRNRRRVLTWFASRWRNHQPKRAEKPHSKFSAA
Ga0079038_117803	Ga0079038_1178031	F016502	MAPLRRTERSGRQFNPARVVPGMATSPWNSCGAAETPGGASTDLSVPTTRQNESV
Ga0079038_118072	Ga0079038_1180721	F035541	VKRLALIFTLAIIACFYAAPAFAYVPTTDLNIIPITDTLEEGTFEWDVTARYNDNFPRGHRVSTRLFGALFENFEFGMGWGISRLAGPVEVAVKYKVLDEYEGRFPVSLAVGAEGITGNYQRTGMDPTYYAVIGVHDVHLGGWWDWYVGAANNPTGFDDEDNSLFGGFKYWVNDEVQVNADYWGYNSNEEYVIAGGLNYDWVNHMGIQGWVERDS
Ga0079038_118846	Ga0079038_1188461	F055278	SLRPSEFSGLLLDPQSLPPRIVLLWNRVLVQSFRPLKYHRYCFGDPALPLVLTSAVRSSFSGLDQRLFRLPITSSRRASPSSRVLPSNTYPAAATTESSHGLLLPTALEESEVHCSRAVLTRYVPPSGFDYPLDGLLPRIPCRFCFAPAALLGFSLRRFPLPRGFNSVSAGKDPHTVNPQVTPAPKYRTGPAGLGFWGHTSRKCLASDGCLSRRSPAPPLGFIPPGLSRESLDQDFSRSPLTRFADPAIARRIHRRPRVSIGSRLASTSLAPECTPVEATLLGFP
Ga0079038_120671	Ga0079038_1206711	F068858	VGTIHQFLWRRSRAVSDAMQELCGKGRLETVPSRVK*
Ga0079038_120784	Ga0079038_1207841	F037756	ALFPVPTFGAHLAAAAGFPTPFSAANGVSGLVAGPSNLLQG*
Ga0079038_120960	Ga0079038_1209601	F003269	LTWFASRWRNHRSKRAEKPHSIIQRRELLDGPATRPETPLAVENSVGKLAAN
Ga0079038_122495	Ga0079038_1224951	F085747	VICLAAKLSAGIHGTELREQNRRTVSGLLPGAPFQARRINAPRAVCWPDSVRSRRLVTTFRSLGTTACFQTTIPRSKLPACYFNALPNRLSRPFDRPLPLPRRFAPGPVGIKAVGPFPGSRLSTSRPSSNLHSPLGALTPAGSERSIRFGPGRPTFRLRPIVLRSPQPFYCVVPVADHRSELATFPEAR
Ga0079038_122920	Ga0079038_1229201	F020700	MTTRLSLHLRFARLCPKTLRGVFSDAAAGIAATSIGLNFPFLFQVVKPEKVRR
Ga0079038_122976	Ga0079038_1229761	F000203	RHALFPMLAFGAELAASFPTLFSTASGVTGLVAGPSSALRSLDY*
Ga0079038_124017	Ga0079038_1240172	F020183	MSLTINAKVYNADKYSSDAIGYVGAAHTLSILDDVQLSRVVPKPTNVFSGVGRTSAKLTRTLTLTGALTPTGNAIVQVNVSIPVGAASADIDALLNDMGSFLSSASAKTHVKGLQITF*
Ga0079038_124285	Ga0079038_1242851	F025295	HGNWPGKATELLRRRKVLIPEKLKFITRKRSLQKPI*
Ga0079038_124613	Ga0079038_1246132	F000734	MHREGHGVSAGPVKTFRNVGDVKNGTADLWTKGNLRVKRRDPWPRANALSKAAADPELAGEDADKKT*
Ga0079038_124991	Ga0079038_1249911	F045132	VLMHSSNHYPLGNCDSPGSETNPDYLTQLEAASHRSALPSSLFAFTDGARTPPEELVNLACRTGCFSTRLERGPVNQPDPTFPRSPGSILETFAGEFSPASRRL
Ga0079038_125838	Ga0079038_1258381	F025295	VTGPGEATELLRRREVLIPEKLKFVTRKSNLQKPI*
Ga0079038_126666	Ga0079038_1266661	F025295	MVTGPGEAAELLKRREVLIPKKLKYLTRKSDLQKLN*
Ga0079038_128114	Ga0079038_1281141	F044534	GIYHQFLWPESCPVSSHTNQELSGKARLETASSRVRPTGSFEPCADAVTPEGFGCYCADQNAVAIPGGPTPPKGPARSASEARKGIATAGSERIWQNP*
Ga0079038_129728	Ga0079038_1297281	F000203	ALFPTPTLGAAGAAGFPTLFSTASGVSGLVAGPFSAFRSLNY*
Ga0079038_131173	Ga0079038_1311731	F000203	HALFPGPAFGAYLAAGFPTLFSTASGVYGLVAGPSSALRLLDFE*
Ga0079038_131376	Ga0079038_1313761	F000817	RAAAINRLKPGVSKIIPGNWGKARSGWLAWPLDRRVARFGGGGRIHQFL*
Ga0079038_132278	Ga0079038_1322781	F001346	VKTFREVGDVKNDTADLRTKGNLRVKRRDPWHRANALPKAAADLALSGEDADKKTQTCLYLVRKPVAQPPVQAS*
Ga0079038_132370	Ga0079038_1323701	F011154	IESSSSGRFRAWANRSYPEGIRLLLCISTGGRLWRSPEGGQPNERRRKAGQSERPNREGHAVSAGPVKTFRNVGDVKNDTADLWTKGNLRVKRRDPWHRANALSRAAADPELNGEDADKNTQTCLDLVRKPVAQPLVEAS*
Ga0079038_132854	Ga0079038_1328541	F085747	VICLAAKLSAGILGTELREQNRRTVSGLLPGAPFWAHRINAPRAVCWPDSVRSRRFVTTFHSLATTACFQATIPRSKLPACYFNALPNRSSEPFDRSLLRPRRFAPGPVGLIAGGPFPDLQLGTSESASNLHSPLGALTPAGSKRSIRFGSEKPTFRLRPIVLRSPQPFYCVVPVADHRSELAT
Ga0079038_133141	Ga0079038_1331411	F000203	LFPVPALGASGAASFPTLFSTASGVSGLVAGPSSALPPLDFE*
Ga0079038_133870	Ga0079038_1338701	F094695	RGWVMPSCSPLQRCQLLDGGITACSVRDPYFRETWASVQRFSDESIGPSWVRPIPVQRLPFPAASFGFSLSAVVRRFSRLRHSSLRLTCLLEAQPSICRSRMRTRKHLSCGFVPYSAQKKQASVYPGDSKLRHCPSSGFLTLLTSYSACNPGQLVSSGLRSWGSIKSDCSLPSFDKGRASRS*
Ga0079038_135231	Ga0079038_1352311	F081897	RLSFPCRHWAHTLAGAAGFPTLFSTASGVFGLVAGPSMVLRPLDFE*
Ga0079038_135401	Ga0079038_1354011	F000203	MGVRHALFPMLALGAKLAASFPTPFSTASGVTGLVAGPSSALRPLDY*
Ga0079038_135419	Ga0079038_1354191	F001233	LRWAAVINRLRLSVSRIIPGNWGKAQPGWLAWPLDCRVARFGGRGRIHQFLWRCSRIVSHAKRNCAARSD*
Ga0079038_135419	Ga0079038_1354192	F003269	VKTRTNSRRRVLTWFANRWRNHQSKRAEKPHSIIQRRKTLDGPATRPETPLAVENGVGKLAA
Ga0079038_135920	Ga0079038_1359201	F052615	VAPGQRTVKSGGRSGAKWSRRAQAVTGVSRPGSQAGGATTSPSELKSLTQQSSRRKALDGPATRPDTPLAVENGVGKLAAPHGEAPNASMGKRAWR
Ga0079038_137696	Ga0079038_1376961	F000734	LAGPVKTFRNVGDVKNGTADLWTKGNLRVKRRDPWLWANALSKAVADPELAGEDAEMKT*
Ga0079038_137853	Ga0079038_1378531	F001346	VKTFREVGDVKNGTADLWTKGNLRVKRRDPWHRANALLEAAADPALSGEDADKKTQTCLDLVRRPVAQPPVQAS*
Ga0079038_138420	Ga0079038_1384202	F099499	MPIITILMFLAIAASVCLVLHVLRRDTVPLWVAVALLCLIELLRTLPLGRD*
Ga0079038_138531	Ga0079038_1385311	F081898	ERHRLWCDFLFGGSSKVSGGLRSVAESDHPSREVATPCRVSNLETLASALLRRSPPALGHCGLGYRVFTFQAPEKQLLDSRAPLLGFGPSSEAARSPSRCPEPLVFQKPDARSAPNAN*
Ga0079038_138745	Ga0079038_1387451	F094695	WLVMPSCSSLQRCQLLDGGVSVCSVRDPCFRETWAVVQRFSGESIGPSWVRPIPVQRSPFPAASFGFSLSAVVRKFSHLRHSSLRLTCLLEALPPINRPRMRTREHLSCDFVPYSARQKQASVSPGASNLRHCPSSGFLTLSTSCSACNPDQFVSPGLRSWGSTKSVYSPPSFDKGRVRRAWVSSPKLSPFP*
Ga0079038_139208	Ga0079038_1392081	F044534	RGIYHQFLWPESCPVSSSTNQELCGEARLETASSRVRSTGSFDPCADAVTPEGYGCYCADQNAVTTPGGTTPPKGPARRMSRARKGDGTAGSERIWQSP*
Ga0079038_139561	Ga0079038_1395611	F024800	VARGQRTANSGGRPRANGRDAEIKSQSCLNPVRQPVAQPPVEAGLEASLEFQRPQGAGRPCYE
Ga0079038_139820	Ga0079038_1398201	F006508	VAGANAPSKTVADPGQVVKTRIKSYRRVLTWFASRWRNHQPKRAEKPHSKFNAARRWT
Ga0079038_141294	Ga0079038_1412941	F092888	MICFLAIGVCFTIVSYVLIQAMVSSHPVVVSPAFEPVSSIVLATVGYIGFLTGWKEITITVNNLEKRFTATTRNLLTRTSKKREATFSEIQTMRGTVDEHTNSVKVTIARDNQEAIQFQLDCNSYGPLEKYLKTLLPSIPIITRDNGFFEAGV
Ga0079038_141343	Ga0079038_1413431	F004925	DVSRIIPGNWGKAESGWLAWPLLNRIARFGSGGRIHQFLWRRSHAVSYANQELGGEGR*
Ga0079038_142319	Ga0079038_1423192	F092888	VHEQGLLEQNQNLFTLRARIASGTIDFLAIGVCFTVVSSILIQAMVSGQPAMQPTSYEPFSSIILATIGYAGFLTNWNELTITVDDLNKRFTATTRNLVTRMSNKREATFSEIRAMIGTVDEMNNSVKVTITRDNQEAIRFQLECNSYGPLEKYLKTLLPKVPTITRETRIYPAGMPTGHVN
Ga0079038_143572	Ga0079038_1435721	F049072	MRGALFTLVLIVAVVAGLGFYMGWFHFSSGSDGSSAHVTVSMDKGQIQKDRDKAVDKVQDLGQHAKDQVATTPQTAQQ*
Ga0079038_145027	Ga0079038_1450271	F025295	VTGPGEATKFLRRSKVLIPEKLKFLTRKSNLQMLI*
Ga0079038_145492	Ga0079038_1454921	F006508	VALANAPSKAVADQSQVVKTRRRNRRRVLTWFASRWRNHQPKRAEKPHSKFNAA
Ga0079038_147919	Ga0079038_1479191	F035116	VSCPGSQAGGANACRSELKSLTRESSGRKTVDGPATRPITSLAVKNSVGKPAAREAPNVGVGKESVANSHPPLW
Ga0079038_148308	Ga0079038_1483081	F001024	MRPATPFAPENGVGKLAAPLRWSRLMPARERERGEL
Ga0079038_149979	Ga0079038_1499791	F016975	VSWPGSQAGVATTSRSELKSLTQESSGRKALDGRATRPETPLAVENSVGK
Ga0079038_151611	Ga0079038_1516111	F096691	VPSGGDAKSKSQTCLHLVGKLVAQPSVKPAEKPHSKSSVRKALDGPATRPKTPLAVENGVGK
Ga0079038_152516	Ga0079038_1525161	F081506	CPLFKIGNERRCTMRIRKLVGVAMVIAVLASIIVTGAAQGAVAPSPTVPAPKVTALALPFAWVDTAFPVLVIVKNQADCTIEDPQICIEVPEGCVLELPEDECVEPWFGIGAKGYAFAIWFVSCPMETDELLISVCVMGEVCGGGQMTPACDTVEIEVWE*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300013046: Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaT (Metagenome Metatranscriptome)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences