NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300010968

3300010968: Microbial communities from the middle layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.mid



Overview

Basic Information
IMG/M Taxon OID3300010968 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0121629 | Gp0157203 | Ga0139250
Sample NameMicrobial communities from the middle layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.mid
Sequencing StatusPermanent Draft
Sequencing CenterHellenic Centre for Marine Research (HCMR)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size207028785
Sequencing Scaffolds21
Novel Protein Genes21
Associated Families15

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria2
Not Available6
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis4
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_191
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon MnTg011
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameInactive Hydrothermal Chimney Metagenome Study
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Chimney Microbial Mat → Inactive Hydrothermal Chimney Metagenome Study

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine hydrothermal vent biome → marine hydrothermal vent chimney → microbial mat material
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Surface (saline)

Location Information
LocationKolumbo submarine Volcano, Hellenic Volcanic Arc, Aegean Sea, Greece
CoordinatesLat. (o)36.52Long. (o)25.48Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007003Metagenome / Metatranscriptome360Y
F008223Metagenome / Metatranscriptome337Y
F009170Metagenome / Metatranscriptome322Y
F015265Metagenome / Metatranscriptome256Y
F018371Metagenome / Metatranscriptome235Y
F034612Metagenome / Metatranscriptome174Y
F035771Metagenome / Metatranscriptome171Y
F040633Metagenome / Metatranscriptome161Y
F055778Metagenome / Metatranscriptome138Y
F083231Metagenome / Metatranscriptome113Y
F087388Metagenome110Y
F087396Metagenome / Metatranscriptome110Y
F095691Metagenome105Y
F103291Metagenome101Y
F105201Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0139250_1000337All Organisms → cellular organisms → Bacteria2150Open in IMG/M
Ga0139250_1002848Not Available1179Open in IMG/M
Ga0139250_1009358All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2781Open in IMG/M
Ga0139250_1010646All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales2037Open in IMG/M
Ga0139250_1015313All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_191460Open in IMG/M
Ga0139250_1016120All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon MnTg011304Open in IMG/M
Ga0139250_1025191All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon1181Open in IMG/M
Ga0139250_1034238All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia5294Open in IMG/M
Ga0139250_1039587Not Available2430Open in IMG/M
Ga0139250_1047630Not Available569Open in IMG/M
Ga0139250_1055480Not Available859Open in IMG/M
Ga0139250_1090231All Organisms → cellular organisms → Bacteria1117Open in IMG/M
Ga0139250_1097331All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis7107Open in IMG/M
Ga0139250_1097595Not Available550Open in IMG/M
Ga0139250_1101047All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2703Open in IMG/M
Ga0139250_1102085All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2191Open in IMG/M
Ga0139250_1104468All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium938Open in IMG/M
Ga0139250_1108103Not Available674Open in IMG/M
Ga0139250_1110174All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1582Open in IMG/M
Ga0139250_1173946All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium758Open in IMG/M
Ga0139250_1181993All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1050Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0139250_1000337Ga0139250_10003373F040633MTDFGVRRAKAAFLSGCKSHPANLLQPEAIGAVMEVTKWLKPLV*
Ga0139250_1002848Ga0139250_10028481F008223DRFATATSMGIDREGLARYPAKQRQVMAFHFGAIEYLAREYQLNETQILGVFVMFLERYFVMPITETGSISERVQDFYDKPEEREFLEAGSDVCRRWYTAGDRRAPLELGERLQP*
Ga0139250_1009358Ga0139250_10093584F105201MXFHDEELDEEELNKCFAKFDSKTIELIQQEYKND*
Ga0139250_1010646Ga0139250_10106462F105201MLFHDXELDEEELNKCFAKFDSKTIELIQKEYTND*
Ga0139250_1015313Ga0139250_10153134F035771NVEKSHQRRSRPFAVLTYWKYAPRVKTAAALLDGLF*
Ga0139250_1016120Ga0139250_10161202F103291MEIFGLSPVVATLTIVSSGVXXXNXLGWLKSKEDYNTRSALASAIIAFVVGITIIGPQIEAIQDQMLSDLSELTIVASLIASIAGFDVLTKNVFKIANQKINLQNKPV*
Ga0139250_1025191Ga0139250_10251912F007003YNAWKKFKKEWTLHIIPVTEQKDFKRFYDHLIVETSDGIAWGVTGKNVIYMFINDNRNPFIIRQNIMPLSHELLHALYQFSVGTSHITRIYDSPEGRATTRGAAATVIVHDNWYGRKQTLRIWISWGLGWLPITISYIPIKQAKQLYRL*
Ga0139250_1034238Ga0139250_10342385F095691MLQHDGSIKIAWHADRFEAILVRARFRPSEELEGYASGVADVALLERSLADLRRALRKQYPGEFDLVTREPLSASWQVIISFHPPRGEPNPDPW*
Ga0139250_1039587Ga0139250_10395872F087388MAKTVSELAREIITRLNRGEPLDQALSMALAGDEIDEQTRMDLEVAGLRDAVVHEAFHELLEWHANFGGLAEFLEIDEAIHRTADRVGHDFEEDLPEHTEDPGPRLVH*
Ga0139250_1047630Ga0139250_10476302F008223MSLISKLFHTKPPQPAAIETVSKILDRFATATSMGIDREGLARYPAKQRQVMAFHFGAIEYLAREYQLNETQILGVFVMFLERYFVMPITETGSISERVQDFYDKPEEREFLEAGSDVCRRWYTAGDRRAPLEL
Ga0139250_1055480Ga0139250_10554802F035771KVEKSRQRRSHPCPVLTYWKYAPRVKRAAALLDELF*
Ga0139250_1090231Ga0139250_10902312F087396MEAAACHDLSLTLEGFVLDEPTLVNSAVLSYLAMVASLIERRPIGREELLHWLRRSMRQRSMGQSLRREYVLRYLHQHPP*
Ga0139250_1097331Ga0139250_10973316F105201MLFHDEDLDEEELNKCFAKFDSKTIELIQKEXTND*
Ga0139250_1097595Ga0139250_10975951F018371MATSNIIEPNRLTNMQEMETWVQGPDGGNRLFTYSGMAEVELCGGLPHPRWSLEVVCFEIGRIYDTDNGEDVINIVATASLAGTRTDGVASFAGWQIFGAAGELDTDSNRVRMNIAAGARDTQAFLEQISFNINVLARVN
Ga0139250_1101047Ga0139250_11010472F105201MLFNDEELDEEELXKYFAKFDSKTIXLIQKEYTND*
Ga0139250_1102085Ga0139250_11020851F015265VTRSSTMYPDQITKNPTLIEKNAIVNLNNVGLPVFLNPIYDIIPIASPIKNPAKLRIFSNRNSNDD*
Ga0139250_1104468Ga0139250_11044682F034612MTXTNQADDVLAYLDNQLPAYPFDPAVDQPFVDELRADFPDVCLLDEIKAFRWYYANDPAARFANLRSALRRWIANAWTRRNGY*
Ga0139250_1108103Ga0139250_11081031F083231MASKDGKIFDTIVLIGLAVNVLTAAYLLLMYFEVX*
Ga0139250_1110174Ga0139250_11101743F055778MLSKVDFPEPELPTISTISPCSIEKDALSRAFTLLSPSP*
Ga0139250_1173946Ga0139250_11739461F009170ELKKVMRSFGRQCRGQGRVFVKLVRQTERQLLELGQPIPVLGRQAQQLLEQTETLSAGQRERLTRQLGSAVAAQXQIRKQSGRLTQGKKLGHCKIVNAYDLTLAPILKGKSNCPAQLGRKPGLMSEPATGFIFATRVPVGNPSDASYVVPLLDQVQRAIHQVSPRKRRQVHSVAGDLGINDATLRQTLHQRGILTIGIPQTVAPLDPSQSR*
Ga0139250_1181993Ga0139250_11819932F105201MLFHDEDLAEEELNKYFAKFDSKTIELIQKEYTNDR*
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.