NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F105201

Metagenome Family F105201

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F105201
Family Type Metagenome
Number of Sequences 100
Average Sequence Length 36 residues
Representative Sequence MLFHDEELDEEELNKCFAKFDSKTIELIQKEYKND
Number of Associated Samples 55
Number of Associated Scaffolds 100

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Archaea
% of genes with valid RBS motifs 3.00 %
% of genes near scaffold ends (potentially truncated) 2.00 %
% of genes from short scaffolds (< 2000 bps) 69.00 %
Associated GOLD sequencing projects 50
AlphaFold2 3D model prediction Yes
3D model pTM-score0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Archaea (73.000 % of family members)
NCBI Taxonomy ID 2157
Taxonomy All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Chimney Microbial Mat
(17.000 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(32.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 34.92%    β-sheet: 0.00%    Coil/Unstructured: 65.08%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 100 Family Scaffolds
PF14588YjgF_endoribonc 13.00
PF01978TrmB 9.00
PF01042Ribonuc_L-PSP 4.00
PF00149Metallophos 2.00
PF01243Putative_PNPOx 2.00
PF00805Pentapeptide 1.00
PF02643DUF192 1.00
PF04212MIT 1.00
PF08459UvrC_RNaseH_dom 1.00
PF09336Vps4_C 1.00
PF02494HYR 1.00
PF00988CPSase_sm_chain 1.00
PF13229Beta_helix 1.00
PF03167UDG 1.00
PF06902Fer4_19 1.00
PF07681DoxX 1.00

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 100 Family Scaffolds
COG0251Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 familyDefense mechanisms [V] 4.00
COG0505Carbamoylphosphate synthase small subunitAmino acid transport and metabolism [E] 2.00
COG0322Excinuclease UvrABC, nuclease subunitReplication, recombination and repair [L] 1.00
COG0464AAA+-type ATPase, SpoVK/Ycf46/Vps4 familyCell cycle control, cell division, chromosome partitioning [D] 1.00
COG0692Uracil-DNA glycosylaseReplication, recombination and repair [L] 1.00
COG1357Uncharacterized conserved protein YjbI, contains pentapeptide repeatsFunction unknown [S] 1.00
COG1430Uncharacterized conserved membrane protein, UPF0127 familyFunction unknown [S] 1.00
COG1573Uracil-DNA glycosylaseReplication, recombination and repair [L] 1.00
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 1.00
COG3663G:T/U-mismatch repair DNA glycosylaseReplication, recombination and repair [L] 1.00
COG4270Uncharacterized membrane proteinFunction unknown [S] 1.00

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms73.00 %
UnclassifiedrootN/A27.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000119|KGI_S1_ANT01_95mDRAFT_c10074358All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1083Open in IMG/M
3300000792|BS_KBA_SWE02_21mDRAFT_10138454Not Available603Open in IMG/M
3300001270|BBAY91_10154745All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales580Open in IMG/M
3300001271|BBAY90_10008277All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1507Open in IMG/M
3300001271|BBAY90_10071430Not Available642Open in IMG/M
3300001271|BBAY90_10103905All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales554Open in IMG/M
3300002231|KVRMV2_100190222All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus615Open in IMG/M
3300002242|KVWGV2_10019214All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus690Open in IMG/M
3300003595|JGI26263J51726_1004149All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis4245Open in IMG/M
3300004113|Ga0065183_10453824Not Available627Open in IMG/M
3300005590|Ga0070727_10419792All Organisms → cellular organisms → Archaea746Open in IMG/M
3300005601|Ga0070722_10001140All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus6700Open in IMG/M
3300005601|Ga0070722_10021082All Organisms → cellular organisms → Archaea2096Open in IMG/M
3300005601|Ga0070722_10079475All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1224Open in IMG/M
3300005612|Ga0070723_10030172All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2034Open in IMG/M
3300005612|Ga0070723_10328523All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales727Open in IMG/M
3300005824|Ga0074474_1021942All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis19497Open in IMG/M
3300005825|Ga0074476_1218379All Organisms → cellular organisms → Archaea2156Open in IMG/M
3300005825|Ga0074476_1442175All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2554Open in IMG/M
3300006467|Ga0099972_10940447Not Available1497Open in IMG/M
3300006468|Ga0082251_10105770All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae1107Open in IMG/M
3300006900|Ga0066376_10484960All Organisms → cellular organisms → Archaea699Open in IMG/M
3300008470|Ga0115371_10501298Not Available1714Open in IMG/M
3300008470|Ga0115371_10626152All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales861Open in IMG/M
3300008470|Ga0115371_11031130Not Available903Open in IMG/M
3300008470|Ga0115371_11081083All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales750Open in IMG/M
3300008470|Ga0115371_11292120Not Available883Open in IMG/M
3300009102|Ga0114948_10679960All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae796Open in IMG/M
3300009481|Ga0114932_10034473All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis3345Open in IMG/M
3300009481|Ga0114932_10044894All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus2863Open in IMG/M
3300009515|Ga0129286_10090931All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales898Open in IMG/M
3300009515|Ga0129286_10183395Not Available695Open in IMG/M
3300009702|Ga0114931_10575462Not Available701Open in IMG/M
3300009702|Ga0114931_10811408Not Available551Open in IMG/M
3300010392|Ga0118731_101363059All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae1466Open in IMG/M
3300010392|Ga0118731_102584618All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus564Open in IMG/M
3300010392|Ga0118731_105870626All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis1568Open in IMG/M
3300010392|Ga0118731_111644469All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2156Open in IMG/M
3300010430|Ga0118733_102343717Not Available1058Open in IMG/M
3300010430|Ga0118733_103165863Not Available899Open in IMG/M
3300010967|Ga0139247_1030282All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales891Open in IMG/M
3300010967|Ga0139247_1032563Not Available1743Open in IMG/M
3300010967|Ga0139247_1069842All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae1001Open in IMG/M
3300010967|Ga0139247_1120388All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis4055Open in IMG/M
3300010967|Ga0139247_1120389All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae1604Open in IMG/M
3300010967|Ga0139247_1120390All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1545Open in IMG/M
3300010967|Ga0139247_1121464All Organisms → cellular organisms → Archaea2188Open in IMG/M
3300010967|Ga0139247_1122581All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1193Open in IMG/M
3300010968|Ga0139250_1009358All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2781Open in IMG/M
3300010968|Ga0139250_1010646All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales2037Open in IMG/M
3300010968|Ga0139250_1097331All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis7107Open in IMG/M
3300010968|Ga0139250_1101047All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2703Open in IMG/M
3300010968|Ga0139250_1181993All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1050Open in IMG/M
3300010969|Ga0139246_1055789All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales809Open in IMG/M
3300010969|Ga0139246_1099564All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1057Open in IMG/M
3300010969|Ga0139246_1122267All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus4476Open in IMG/M
3300010969|Ga0139246_1125948All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1363Open in IMG/M
3300011013|Ga0114934_10004506All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis8512Open in IMG/M
3300011261|Ga0151661_1013956All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2799Open in IMG/M
3300013101|Ga0164313_11454620All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales552Open in IMG/M
3300014297|Ga0075306_1123609Not Available516Open in IMG/M
3300020230|Ga0212167_1141223All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis5466Open in IMG/M
3300021958|Ga0222718_10096596All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1750Open in IMG/M
3300021958|Ga0222718_10131211All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1437Open in IMG/M
3300022201|Ga0224503_10002644All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis5245Open in IMG/M
3300022201|Ga0224503_10017094All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2089Open in IMG/M
3300022201|Ga0224503_10030065Not Available1605Open in IMG/M
3300022202|Ga0224498_10184079Not Available617Open in IMG/M
3300022209|Ga0224497_10001170All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus17038Open in IMG/M
3300022209|Ga0224497_10001774All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus13356Open in IMG/M
3300022209|Ga0224497_10139171All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales968Open in IMG/M
3300022217|Ga0224514_10005625All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis3842Open in IMG/M
3300022220|Ga0224513_10403263Not Available552Open in IMG/M
3300022308|Ga0224504_10140917All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales988Open in IMG/M
(restricted) 3300024059|Ga0255040_10257356All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales724Open in IMG/M
(restricted) 3300024062|Ga0255039_10043767All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales1678Open in IMG/M
(restricted) 3300024261|Ga0233439_10119950Not Available1309Open in IMG/M
3300024344|Ga0209992_10000832All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis37771Open in IMG/M
3300024344|Ga0209992_10002503All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis16662Open in IMG/M
3300024344|Ga0209992_10410188All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Nitrosopumilus maritimus533Open in IMG/M
3300025005|Ga0210005_1001215All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis17087Open in IMG/M
3300025883|Ga0209456_10004039Not Available6685Open in IMG/M
3300025883|Ga0209456_10058324All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis1732Open in IMG/M
3300025883|Ga0209456_10062459All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1668Open in IMG/M
3300025883|Ga0209456_10068628All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus1584Open in IMG/M
3300025883|Ga0209456_10136282Not Available1070Open in IMG/M
3300025895|Ga0209567_10587121Not Available540Open in IMG/M
3300027758|Ga0209379_10252870Not Available598Open in IMG/M
3300027845|Ga0209271_10001708All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus7834Open in IMG/M
3300027967|Ga0209272_10128813All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis899Open in IMG/M
3300028535|Ga0257111_1111339Not Available858Open in IMG/M
3300028598|Ga0265306_10401670Not Available745Open in IMG/M
3300028599|Ga0265309_10483828Not Available822Open in IMG/M
3300028599|Ga0265309_10868815Not Available619Open in IMG/M
3300028599|Ga0265309_11304217Not Available507Open in IMG/M
3300028600|Ga0265303_10364485All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis1142Open in IMG/M
3300031566|Ga0307378_10636389All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis929Open in IMG/M
3300032260|Ga0316192_10490191All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales837Open in IMG/M
3300032277|Ga0316202_10038586All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus → Candidatus Nitrosopumilus sediminis2268Open in IMG/M
3300032277|Ga0316202_10186722All Organisms → cellular organisms → Archaea962Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Hydrothermal Chimney Microbial MatEnvironmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Chimney Microbial Mat17.00%
Marine SedimentEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment11.00%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment10.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface8.00%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine7.00%
SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment7.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine5.00%
SedimentEnvironmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment5.00%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface4.00%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)3.00%
SedimentEnvironmental → Aquatic → Marine → Oceanic → Sediment → Sediment2.00%
Microbial MatEnvironmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat2.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine2.00%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water2.00%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment2.00%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater2.00%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater1.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.00%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine1.00%
Deep SubsurfaceEnvironmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface1.00%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.00%
MarineEnvironmental → Aquatic → Marine → Coastal → Sediment → Marine1.00%
Worm BurrowEnvironmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow1.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.00%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment1.00%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands1.00%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil1.00%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000119Marine microbial communities from chronically polluted sediments in Antarctica -King George Island site S1 sample ANT 01_9.5mEnvironmentalOpen in IMG/M
3300000792Marine microbial communities from chronically polluted sediments in the Baltic Sea - site KBA sample SWE 02_21mEnvironmentalOpen in IMG/M
3300001270Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY91Host-AssociatedOpen in IMG/M
3300001271Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY90Host-AssociatedOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300002242Marine sediment microbial communities from Kolumbo Volcano mats, Greece - white/grey matEnvironmentalOpen in IMG/M
3300003595Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI074_LV_200m_DNAEnvironmentalOpen in IMG/M
3300004113Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (version 2)EnvironmentalOpen in IMG/M
3300005590Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2EnvironmentalOpen in IMG/M
3300005601Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.1EnvironmentalOpen in IMG/M
3300005612Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2EnvironmentalOpen in IMG/M
3300005824Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.180_BBCEnvironmentalOpen in IMG/M
3300005825Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.184_BBBEnvironmentalOpen in IMG/M
3300006467Coastal sediment microbial communities from Rhode Island, USA: Combined Assembly of Gp0121717, Gp0123912, Gp0123935EnvironmentalOpen in IMG/M
3300006468Deep-sea sediment bacterial and archaeal communities from Fram Strait - Combined Assembly of Gp0119454, Gp0119453, Gp0119452, Gp0119451EnvironmentalOpen in IMG/M
3300006900Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_AEnvironmentalOpen in IMG/M
3300008470Sediment core microbial communities from Adelie Basin, Antarctica. Combined Assembly of Gp0136540, Gp0136562, Gp0136563EnvironmentalOpen in IMG/M
3300009102Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaGEnvironmentalOpen in IMG/M
3300009481Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaGEnvironmentalOpen in IMG/M
3300009515Microbial community of beach aquifer sediment core from Cape Shores, Lewes, Delaware, USA - CF-2EnvironmentalOpen in IMG/M
3300009702Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV14_V59a metaGEnvironmentalOpen in IMG/M
3300010392Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385EnvironmentalOpen in IMG/M
3300010430Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samplesEnvironmentalOpen in IMG/M
3300010967Microbial communities from the inside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.inEnvironmentalOpen in IMG/M
3300010968Microbial communities from the middle layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.midEnvironmentalOpen in IMG/M
3300010969Microbial communities from the outside layer of the microbial mat covering an inactive hydrothermal chimney from the Kolumbo submarine volcano, Santorini, Greece - V16_c.outEnvironmentalOpen in IMG/M
3300011013Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaGEnvironmentalOpen in IMG/M
3300011261Marine sediment microbial communities from Japan Sea near Toyama Prefecture, Japan - 2015_4, 0.02EnvironmentalOpen in IMG/M
3300013101Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay4, Core 4569-4, 0-3 cmEnvironmentalOpen in IMG/M
3300014297Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLC_D1EnvironmentalOpen in IMG/M
3300020230Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR02EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300022201Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_21EnvironmentalOpen in IMG/M
3300022202Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_21EnvironmentalOpen in IMG/M
3300022209Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_13EnvironmentalOpen in IMG/M
3300022217Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_24EnvironmentalOpen in IMG/M
3300022220Sediment microbial communities from San Francisco Bay, California, United States - SF_May12_sed_USGS_21EnvironmentalOpen in IMG/M
3300022308Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24EnvironmentalOpen in IMG/M
3300024059 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_2EnvironmentalOpen in IMG/M
3300024062 (restricted)Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1EnvironmentalOpen in IMG/M
3300024261 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_123_September2016_100_MGEnvironmentalOpen in IMG/M
3300024344Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025005Groundwater microbial communities from aquifer in Utah, USA - Crystal Geyser 4/9/14 0.2 um filter (SPAdes)EnvironmentalOpen in IMG/M
3300025883Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_11 (SPAdes)EnvironmentalOpen in IMG/M
3300025895Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (SPAdes)EnvironmentalOpen in IMG/M
3300027758Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.1 (SPAdes)EnvironmentalOpen in IMG/M
3300027845Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 (SPAdes)EnvironmentalOpen in IMG/M
3300027967Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdDd00.2 (SPAdes)EnvironmentalOpen in IMG/M
3300028535Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_500mEnvironmentalOpen in IMG/M
3300028598Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160420 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300028599Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160524 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300028600Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)EnvironmentalOpen in IMG/M
3300031566Soil microbial communities from Risofladan, Vaasa, Finland - UN-1EnvironmentalOpen in IMG/M
3300032260Coastal sediment microbial communities from Maine, United States - Merrow Island worm burrowEnvironmentalOpen in IMG/M
3300032277Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotiteEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
KGI_S1_ANT01_95mDRAFT_1007435823300000119MarineMLFHDEELDEEELNKFFAKFDSKTIELIQQEYQND*
BS_KBA_SWE02_21mDRAFT_1013845433300000792MarineMLYHDEELDEEELNKCFAKFDSRTIELILKEYRDD*
BBAY91_1015474513300001270Macroalgal SurfaceMLFHDEELDVEELYKCFEKLDPKTLELIKLEYDTV*
BBAY90_1000827723300001271Macroalgal SurfaceMLFHDEELDEEELNKIFAQFDSKTIELIRKEYAND*
BBAY90_1007143023300001271Macroalgal SurfaceLSVTTSRMLFHDEELDEEELNKCFKKLTPETLKLLQKEYAHD*
BBAY90_1010390533300001271Macroalgal SurfaceMLFHDEELDVEELYKCFEKLDPKTLELIKLEYDAV*
KVRMV2_10019022223300002231Marine SedimentMLFHDEELTEEELHKCFAKLDSKTIELIQKEYEND*
KVWGV2_1001921423300002242Marine SedimentMLFHDEXLDEEELNKCFAKFDSKTIELIQKEYTNDRQSEISK*
JGI26263J51726_100414933300003595MarineMNVSFKFIIVMLYHDEELDEEELNKCFAKFDSKTIELILQEYKND*
Ga0065183_1045382413300004113Pelagic MarineLIIVMLYHDEELDEEELNKCFAKFDSKTIELILQEYKND*
Ga0070727_1041979233300005590Marine SedimentLKFEFTIVMLFHDEELDEEELHKCFEKLDPHTIELIRLEYNND*
Ga0070722_1000114033300005601Marine SedimentVLFHDEELDEEELNKCFAKFDSKTIELIQKEYKDD*
Ga0070722_1002108243300005601Marine SedimentMLFHDEELDEEELNKCFAKFDSKTIELIQKEYKND*
Ga0070722_1007947523300005601Marine SedimentMLFHDEELDAEELHKCFEKLDPKTLELIKLEYDTV*
Ga0070723_1003017233300005612Marine SedimentLMIVMLYHDEELDEEELNKCFAKFDSKTIELILQEYKND*
Ga0070723_1032852313300005612Marine SedimentMLFHDEELDVEELHKCFEKLDPKTLELIKLEYDTV*
Ga0074474_1021942163300005824Sediment (Intertidal)MLFHDEELDEEALRTCFEKLDPETIELIKLEYEHD*
Ga0074476_121837913300005825Sediment (Intertidal)IGSMLFHDEELDEEALRTCFEKLDPETIELIKLEYEHD*
Ga0074476_144217543300005825Sediment (Intertidal)MLFHDEELDEEELNKCFAKFDSKTIELIQQEYKDD*
Ga0099972_1094044733300006467MarineMLFHDEELDEEELNKCFAKFDSKTIELIQKEYKDD*
Ga0082251_1010577033300006468SedimentMLFHDEELDEEEFKKYLEKLDPETIKLIKEDINEL
Ga0066376_1048496043300006900MarineMLFHDEELDEEEFKKYLEKLDPETIELIKEDLNEL*
Ga0115371_1050129833300008470SedimentMLFHDEELDKEELTRCFEKLTPETIELLQIEYKND*
Ga0115371_1062615223300008470SedimentMLFHDEELDEEELHKCFEKLTPETIELLQLEYKND*
Ga0115371_1103113033300008470SedimentMLFHDEELDEEELHKCFEKLNPETIELLQLEYKND*
Ga0115371_1108108323300008470SedimentMLYHDEELDEEELNKCFAKFDSKTIELIKQEYKND*
Ga0115371_1129212013300008470SedimentMLFHDEELDEEELTKCFEKLDLKTIELIQQEYQND*
Ga0114948_1067996023300009102Deep SubsurfaceMLFHDEELDEEELKKYFDKLDSKTIELINQEYEK*
Ga0114932_1003447313300009481Deep SubsurfaceMNTKDQIRIDMLFHDEELDEEELNKCFAKFDSKTIELIQKEYTND*
Ga0114932_1004489433300009481Deep SubsurfaceMLFHDEELDEEELNKCFEKLSPDTIELIKQEYETA*
Ga0129286_1009093113300009515SedimentMLYHDEELDEEELNKCFAKFDSKTIELIQQEYKND*
Ga0129286_1018339513300009515SedimentMLYHDEELNEEQLKQCFEKFDSKTIELIKQEYGHD*
Ga0114931_1057546213300009702Deep SubsurfaceMLFHDEDLDEEELNKCFAKFDSKTIELIQKEYTND*
Ga0114931_1081140813300009702Deep SubsurfaceMLFHDEELDEEELNKYFAKFDSKTIELIQKEYTNDR*
Ga0118731_10136305923300010392MarineMLFHDEELDAEELHKCFEKLDPKTLELIKLEYDAV*
Ga0118731_10258461833300010392MarineMLFHDEELDEEELTRCFEKLTPETIELLQIEYKND*
Ga0118731_10587062643300010392MarineMLFHDEELDEEELRQCFEKLDPNTIELIRLEYKND*
Ga0118731_11164446933300010392MarineMLFHDEELDAEELHKCFKKLDPKTLELIKLEYDVV*
Ga0118733_10234371723300010430Marine SedimentMLFHDEELNEEDLHKCFKKLDPETIELITQEYNDD*
Ga0118733_10316586313300010430Marine SedimentMLFHDEELNVEELHKCFEKLDPKTLELIKLEYDTV*
Ga0139247_103028223300010967Hydrothermal Chimney Microbial MatMLFHDEELDEEELNKCFAKFDSKTIELIQKEYTND*
Ga0139247_103256313300010967Hydrothermal Chimney Microbial MatMLFHDEELDEEELNKCFAKFDSKTIELIQKEYTNDR*
Ga0139247_106984223300010967Hydrothermal Chimney Microbial MatMLFHDEELDEEELNKCFAKFDSKTIELIQQEYKND*
Ga0139247_112038873300010967Hydrothermal Chimney Microbial MatMLFHDEEXDEEELNKCFAKFDSKTIELIQKEYTND*
Ga0139247_112038923300010967Hydrothermal Chimney Microbial MatMLFHDEELDEEELNKCFAKFDSKTIELIQKEYTTDR*
Ga0139247_112039033300010967Hydrothermal Chimney Microbial MatMLVHDEELDEEELNKYFAKFDSKTIELIQKEYTNDR*
Ga0139247_112146453300010967Hydrothermal Chimney Microbial MatMLFHDEDLDEEELNKCFEKFDSKTIELIQKEYTND*
Ga0139247_112258123300010967Hydrothermal Chimney Microbial MatMLFHDEELDEEELXKCFAKFDSKTIELIQKEYTND*
Ga0139250_100935843300010968Hydrothermal Chimney Microbial MatMXFHDEELDEEELNKCFAKFDSKTIELIQQEYKND*
Ga0139250_101064623300010968Hydrothermal Chimney Microbial MatMLFHDXELDEEELNKCFAKFDSKTIELIQKEYTND*
Ga0139250_109733163300010968Hydrothermal Chimney Microbial MatMLFHDEDLDEEELNKCFAKFDSKTIELIQKEXTND*
Ga0139250_110104723300010968Hydrothermal Chimney Microbial MatMLFNDEELDEEELXKYFAKFDSKTIXLIQKEYTND*
Ga0139250_118199323300010968Hydrothermal Chimney Microbial MatMLFHDEDLAEEELNKYFAKFDSKTIELIQKEYTNDR*
Ga0139246_105578923300010969Hydrothermal Chimney Microbial MatMLFHDEELDEEELNKCFAKFDSKTIELIXKEXTND*
Ga0139246_109956423300010969Hydrothermal Chimney Microbial MatMLFHDXELDXEELNKYFAKFDSKTIELIQKEYTNDR*
Ga0139246_112226793300010969Hydrothermal Chimney Microbial MatMLFHDEDLDEEEXNKCFAKXDSKTIELIQKEYXNDR*
Ga0139246_112594833300010969Hydrothermal Chimney Microbial MatMLFHDEELDEEELNKYFAKFDSKTIELIQKEYTND*
Ga0114934_1000450673300011013Deep SubsurfaceMLFHDEELDEEELNKCFAKLTPETIELLQKEYQND*
Ga0151661_101395643300011261MarineMLYHDEELDEEELNKCFAKFDSKTIELIQKEYKID*
Ga0164313_1145462023300013101Marine SedimentMLYHDEELDEEELNKCFAKFDSKTIELILQEYKND*
Ga0075306_112360933300014297Natural And Restored WetlandsMDDMLFHDEELDEEALRICFEKLDPKTIELIKLEYEND*
Ga0212167_114122383300020230SedimentMLFHDEELNEEELIKCFEKLDSKTIELIKEEYAHD
Ga0222718_1009659623300021958Estuarine WaterMLFHDEELDEEELNKCFAKFDSKTIELIQQEYKND
Ga0222718_1013121133300021958Estuarine WaterMLFHDEELDEEELNKCFAKFDSKTIELIQKEYKND
Ga0224503_1000264423300022201SedimentMLFHDEELDAEELHKCFEKLDPKILELIKLEYDAV
Ga0224503_1001709423300022201SedimentMLFHDEEMDVEELHKCFEKLDPKTLELIKLEYDTV
Ga0224503_1003006523300022201SedimentMLFHDEELDAEELHKCFEKLDPKTLELIKLEYDAV
Ga0224498_1018407913300022202SedimentMLFHDEELDVEELRKCFEKLDPKTLELIKLEYDAV
Ga0224497_10001170183300022209SedimentMLFHDEELDAEELHKCFEKLDPKTLELIELEYDAV
Ga0224497_1000177453300022209SedimentMLFHDEELDEKDLQKFFEKLDSKTIDQIKKLYEDTD
Ga0224497_1013917113300022209SedimentMLYHDEELDEEELNKCFAKFDSKTIELIQQEYKDD
Ga0224514_1000562523300022217SedimentMLFHDEEMDMEELHKCFEKLDPKTLELIKLEYDAV
Ga0224513_1040326313300022220SedimentMLFHDEELDAEELHKCFEKLDPKILELIKPEYDTV
Ga0224504_1014091723300022308SedimentMLFHDEEMDMEELHKCFEKLDPKTLELIKLEYDTV
(restricted) Ga0255040_1025735623300024059SeawaterMLFHDEELDEDELHKCFEKLTPETIELLQLEYKND
(restricted) Ga0255039_1004376723300024062SeawaterMLFHDEELDEEELHKCFEKLTPETIELLQLEYKND
(restricted) Ga0233439_1011995033300024261SeawaterMNVSFKFIIVMLYHDEELDEEELNKCFAKFDSKTIELILQEYKND
Ga0209992_1000083243300024344Deep SubsurfaceMNTKDQIRIDMLFHDEELDEEELNKCFAKFDSKTIELIQKEYTND
Ga0209992_10002503163300024344Deep SubsurfaceMLFHDEELDEEELNKCFAKLTPETIELLQKEYQND
Ga0209992_1041018823300024344Deep SubsurfaceMLFHDEELDEEELNKCFEKLSPDTIELIKQEYETA
Ga0210005_1001215153300025005GroundwaterMLYHDEELDEDALRICFEKLDPETIELIKLEYEND
Ga0209456_10004039103300025883Pelagic MarineMLFHDEELDEEELYEYLKKLDSKTIELMRQEYDND
Ga0209456_1005832423300025883Pelagic MarineMLFHDEELDMEELHKCFEKLDPKTLELIKLEYDTV
Ga0209456_1006245933300025883Pelagic MarineMLFHDEELDEEELHKCFEKLDPKTLELIKLEYDTV
Ga0209456_1006862823300025883Pelagic MarineMLFHDEELDVEELHKCFEKLDPKTLELIKLEYDTV
Ga0209456_1013628213300025883Pelagic MarineMLFHDEELDIEELHKCFEKLDPKTLELIKLEYDTV
Ga0209567_1058712133300025895Pelagic MarineMLYHDEELDEEELNKCFAKFDSRTIELIQQEYKND
Ga0209379_1025287033300027758Marine SedimentMLFHDEELDEEELNKCFAKFDSKTIELIQKEYKDD
Ga0209271_10001708103300027845Marine SedimentVLFHDEELDEEELNKCFAKFDSKTIELIQKEYKDD
Ga0209272_1012881323300027967Marine SedimentMLFHDEELDAEELHKCFEKLDPKTLELIKLEYDTV
Ga0257111_111133913300028535MarineMLFHDEELDEEELNKLFAKFDSKTIELIQQEYKND
Ga0265306_1040167023300028598SedimentMLFHDEELDVEELHKCFEKLDPKTLELIKLEYDIV
Ga0265309_1048382833300028599SedimentMLYHDEELDEEELNKCFAKFDSKTIELIQQEYKND
Ga0265309_1086881513300028599SedimentMLFHDEELDAEEIRKCFEKLDPKTLELIKLEYDTA
Ga0265309_1130421713300028599SedimentMLFHDEELSDEELSKCFKKLAPETLEMIRMECASD
Ga0265303_1036448523300028600SedimentMLFHDEELNKEELHKCFKKLDPETIELITQEYNDD
Ga0307378_1063638923300031566SoilMLFHDEELDEEELNKCFSKFDSKTIELIQQEYKDN
Ga0316192_1049019123300032260Worm BurrowMLFHDEELDAEELYKCFEKLDPKTLELIKLEYDAV
Ga0316202_1003858623300032277Microbial MatMLFHDEELDEEELFKCFKKLTPETLELIKMEYSCD
Ga0316202_1018672223300032277Microbial MatMLYHDEELDEEELNKCFAKFDSKTIELIQQEYTND

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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