| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009337 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0117984 | Gp0126453 | Ga0103864 |
| Sample Name | Microbial communities of water from Amazon river, Brazil - RCM17 |
| Sequencing Status | Permanent Draft |
| Sequencing Center | University of Georgia |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 34079647 |
| Sequencing Scaffolds | 6 |
| Novel Protein Genes | 8 |
| Associated Families | 8 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 2 |
| Not Available | 1 |
| All Organisms → cellular organisms → Eukaryota → Sar | 1 |
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | freshwater river biome → river → river water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Amazon river | |||||||
| Coordinates | Lat. (o) | N/A | Long. (o) | N/A | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000237 | Metagenome / Metatranscriptome | 1498 | Y |
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F004323 | Metagenome / Metatranscriptome | 443 | Y |
| F013303 | Metagenome / Metatranscriptome | 272 | Y |
| F037987 | Metagenome / Metatranscriptome | 167 | Y |
| F040635 | Metagenome / Metatranscriptome | 161 | Y |
| F044442 | Metagenome / Metatranscriptome | 154 | Y |
| F058810 | Metagenome / Metatranscriptome | 134 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0103864_1001599 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | 994 | Open in IMG/M |
| Ga0103864_1002432 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 846 | Open in IMG/M |
| Ga0103864_1002760 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia | 808 | Open in IMG/M |
| Ga0103864_1003401 | Not Available | 739 | Open in IMG/M |
| Ga0103864_1006716 | All Organisms → cellular organisms → Eukaryota → Sar | 558 | Open in IMG/M |
| Ga0103864_1007189 | All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | 543 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0103864_1001599 | Ga0103864_10015992 | F013303 | AVEGDTAFKKSSDLGGSQEVTIKKSKWNGSFLGSVNELFN* |
| Ga0103864_1002432 | Ga0103864_10024322 | F004323 | MPLVGFRRREGRAAPAATFRSPVARDYLSRAFSDVFQAAAP |
| Ga0103864_1002534 | Ga0103864_10025341 | F037987 | PGSTLRSNRDKWGMGVRHALFPELTFGALFSEAVSFPTPFSTASGVFGLVAGPSGDFHLADFE* |
| Ga0103864_1002760 | Ga0103864_10027601 | F000344 | MRPRHPHAAESGVGKYTARESECVQACAAGKERVTNAHP |
| Ga0103864_1003401 | Ga0103864_10034012 | F058810 | MLSAINTSIDTIVSAKQQFVKTFVTNEAVAKPLNTYIDAQASFAKDVAQSSVEFFTTVGSAITGFDYKKAFAVK* |
| Ga0103864_1004243 | Ga0103864_10042431 | F000237 | YYLYLVKLHILFCHES*DTGSGENIYEDKSGTYIS*FYDAMLKEFQDA*Y*TLLVFMYFTEHHFNPSTVNYFFFER*NISELEEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*LAL*LVLLAILPITYNFYNSNNNYLPIIPMQSSLLQTGCFMLFMLSIYCASSMLPCGRYYYDPEGGYVGNP*VKFSYQYAYLYMA*IAHHLDLIEHYGYQYTQTYLRKT |
| Ga0103864_1006716 | Ga0103864_10067161 | F040635 | VRHEDIPEINNPKIRFPVLEGDKLMKEVLNGGYNVHPVPPPNSEIKERIRK |
| Ga0103864_1007189 | Ga0103864_10071891 | F044442 | GNFIMLKFSNLTLAQKRFVVAAIESNTAYKKNPQITLKECAAIYYTLRDTRTGAKNEKIGYPNWLFNKNKVERGVYQLPVPTATELSDYQKELDAKLNPVVKAKAKVAKLAKAKTVKVKSAPAKKAEVTEDAMESSRLQKIIDESAVDEDVEDFNQILRANGIEI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |