Sample 3300008464

Overview

Basic Information
IMG/M Taxon OID	3300008464 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0118500 \| Gp0136536 \| Ga0115336
Sample Name	Deep sea sediment microbial communities from the Gulf of Mexico ? treatment with crude oil and Corexit
Sequencing Status	Permanent Draft
Sequencing Center	University of Texas, Austin
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	132614316
Sequencing Scaffolds	19
Novel Protein Genes	19
Associated Families	14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	6
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Deep Sea Sediment Microbial Communities From The Gulf Of Mexico
Type	Engineered
Taxonomy	Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Sediment → Deep Sea Sediment Microbial Communities From The Gulf Of Mexico

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Sediment (saline)

Location Information
Location	Gulf of Mexico
Coordinates	Lat. (^o)	27.0	Long. (^o)	-88.0	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F006941	Metagenome / Metatranscriptome	361	Y
F019802	Metagenome / Metatranscriptome	227	Y
F029446	Metagenome / Metatranscriptome	188	Y
F030933	Metagenome / Metatranscriptome	184	Y
F055778	Metagenome / Metatranscriptome	138	Y
F074897	Metagenome / Metatranscriptome	119	Y
F074900	Metagenome	119	Y
F081360	Metagenome	114	Y
F087217	Metagenome	110	Y
F087249	Metagenome / Metatranscriptome	110	Y
F092086	Metagenome	107	Y
F095628	Metagenome	105	Y
F101189	Metagenome	102	Y
F105207	Metagenome	100	Y

Family

Category

Number of Sequences

3D Structure?

F006941

Metagenome / Metatranscriptome

361

F019802

Metagenome / Metatranscriptome

227

F029446

Metagenome / Metatranscriptome

188

F030933

Metagenome / Metatranscriptome

184

F055778

Metagenome / Metatranscriptome

138

F074897

Metagenome / Metatranscriptome

119

F074900

Metagenome

119

F081360

Metagenome

114

F087217

Metagenome

110

F087249

Metagenome / Metatranscriptome

110

F092086

Metagenome

107

F095628

Metagenome

105

F101189

Metagenome

102

F105207

Metagenome

100

Scaffold	Taxonomy	Length	IMG/M Link
Ga0115336_104413	All Organisms → cellular organisms → Bacteria	3543	Open in IMG/M
Ga0115336_109668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2498	Open in IMG/M
Ga0115336_110162	Not Available	2443	Open in IMG/M
Ga0115336_112560	Not Available	2218	Open in IMG/M
Ga0115336_113452	Not Available	2151	Open in IMG/M
Ga0115336_117525	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	1911	Open in IMG/M
Ga0115336_119707	Not Available	1814	Open in IMG/M
Ga0115336_123155	Not Available	1688	Open in IMG/M
Ga0115336_127613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	1563	Open in IMG/M
Ga0115336_128303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1546	Open in IMG/M
Ga0115336_137186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1366	Open in IMG/M
Ga0115336_137932	All Organisms → cellular organisms → Bacteria → Proteobacteria	1354	Open in IMG/M
Ga0115336_138285	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
Ga0115336_142987	Not Available	1278	Open in IMG/M
Ga0115336_143744	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	1268	Open in IMG/M
Ga0115336_157550	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
Ga0115336_165294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1059	Open in IMG/M
Ga0115336_167645	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
Ga0115336_170636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	1021	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0115336_104413

All Organisms → cellular organisms → Bacteria

3543

Open in IMG/M

Ga0115336_109668

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria

2498

Open in IMG/M

Ga0115336_110162

Not Available

2443

Open in IMG/M

Ga0115336_112560

Not Available

2218

Open in IMG/M

Ga0115336_113452

Not Available

2151

Open in IMG/M

Ga0115336_117525

All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus

1911

Open in IMG/M

Ga0115336_119707

Not Available

1814

Open in IMG/M

Ga0115336_123155

Not Available

1688

Open in IMG/M

Ga0115336_127613

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium

1563

Open in IMG/M

Ga0115336_128303

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

1546

Open in IMG/M

Ga0115336_137186

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium

1366

Open in IMG/M

Ga0115336_137932

All Organisms → cellular organisms → Bacteria → Proteobacteria

1354

Open in IMG/M

Ga0115336_138285

All Organisms → cellular organisms → Bacteria

1348

Open in IMG/M

Ga0115336_142987

Not Available

1278

Open in IMG/M

Ga0115336_143744

All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium

1268

Open in IMG/M

Ga0115336_157550

All Organisms → cellular organisms → Bacteria

1121

Open in IMG/M

Ga0115336_165294

All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria

1059

Open in IMG/M

Ga0115336_167645

All Organisms → cellular organisms → Bacteria

1042

Open in IMG/M

Ga0115336_170636

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium

1021

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0115336_104413	Ga0115336_1044131	F092086	MYNSAVRLEESTVSKYVVSLLAVIALSACSGPEDVLENIGDVSVPDQLTGCVARNDDGGCNKAVCVADEESDCKSFVKACEKHDHIVDVRDGHETCERREAAPDS*
Ga0115336_109668	Ga0115336_1096686	F030933	MNGDIESQELQRKRARAVKTAWVLGFIAVAIFATFIGSAVIGR*
Ga0115336_110162	Ga0115336_1101621	F029446	MLIIFILVTGIVVGILPGLLRLDKMFSITNIVVGFAGALIGAFLGFGDAPIFLKYPFLNEITLMVSVSFLFVVIKLSVTRKRTVP*
Ga0115336_112560	Ga0115336_1125603	F029446	MLILLILVTGIVIGMLPGIFKLDKMFSITNIVVALVGALMGAFLGFGDAPLFLKYPFLHEKSLMVAVSFLFVIIKVSITRKRNFS*
Ga0115336_113452	Ga0115336_1134522	F101189	MTDLVEIAKERQARLAAEFGRLDDFIRMAEALVKNSQSKSSKVSDTEDEKAAGGNGAEAEREDLSVRKLKAKELMLKSHTSHNEPALDRREHFKFRERA*
Ga0115336_117525	Ga0115336_1175252	F055778	MLSNVDLPEPELPTIKTTSPCSIESDTLSRALTLFSPSP*
Ga0115336_119707	Ga0115336_1197072	F019802	MGVVDAAGFRGSRQSAFELMGLNLKLFDSMFGSQSTVAPPLPTAVDFIASLPEAAPIFTTTYSPLFPGIARLLDATEILAFLSSHHSLPIDMKPAIPRFIKNVVGRIGT*
Ga0115336_123155	Ga0115336_1231552	F101189	MTDVVEIAKERQARLAAEIGKLDDFIRMAEALVKQSLSKSSKASDTEDEKAAGGNGAEAEREDLSVRELKAEELARKSRATHNEPAPDRRGFFRASETT*
Ga0115336_127613	Ga0115336_1276134	F029446	MLIIFILVTGIVVGILPGLLRLDKVFSITNIVVGFAGALVGAFLGFGDAPIFLKYPFLNEMTLMVSVSFLFVVIKVSVTRKRIVP*
Ga0115336_128303	Ga0115336_1283031	F074897	VTTIDTQFPQLDPNTRRIAEQLAREALVSAQVLSDELQQYVEELDAHSSSDEFFDHDVAKRIAALCWKLLDALPAEPDEKQHRLTQLAINYFVLAEDAQDDNYSMAGFEDDLQVV
Ga0115336_137186	Ga0115336_1371862	F074897	MTIELQFSQFDPNTRRIAEQLAREALVSVQVLSDELQQYVEQLDAHSSNADFIDHDVAMRIAALCWKLLDALPAEPDERQHRLTQLAINYFVLAEDAQDDNYSMVGFEDDLQVVTAVIHELGLTHLLEN*
Ga0115336_137932	Ga0115336_1379322	F081360	MELLLLLAVVVLGTIAWLLFRIDAKLQAIGDMIHDASKPEKQRRLTD*
Ga0115336_138285	Ga0115336_1382852	F087217	MLRLSSLIIAAASLAIAFLAVPGTVRAAGLPEGLTIEVIAEYPSMTPGVEKVLFRKLVLKPGVSWSLTVPAQSMCQATKGEAKLVDHTSGETLVLKTGDRWFTSPGHKVTLSNPGTVDHEHLFYTMVPTK*
Ga0115336_142987	Ga0115336_1429872	F074900	MAARIVNMANFSEEEMLCATVEEARATLSAMVERFELQGYNVDEQHSPDEDYLYPQYAVSDDSDGWIGTYTILPR*
Ga0115336_143744	Ga0115336_1437441	F006941	LNQTLQKVMRGFGRQCRGQGKVFVKLVRQTERKLLELGDSIELWSQKAKALLCQDTHLSEAQRERLLRDLESASDAHRQIAKQSQRLTQGKKLSQFKIVNAYDPTIAPIIKGKSNCPAQFGRKTGILSDPACGYIFANRVPKGNPSDPSYVLPMLDKVQQAIDLVT
Ga0115336_157550	Ga0115336_1575501	F095628	YMYLRDFCFCIRNPSAALAMKYGSEPFYDSWASSYAYKMRI*
Ga0115336_165294	Ga0115336_1652941	F087249	MQDTDELTTEAIRERMDAHIAAASESAEIDPANIGLIDDLAAKFLDSLTPKEMGFLMYDNPQPLSLQEVDSDIREKYRAKYGTKNLKRGQFFRLESGTITFFTHEHNLKFKVDN*
Ga0115336_167645	Ga0115336_1676452	F105207	MLLGKGHKFLENGRYQEALEKALKAKSLKLEEQFEWLCHSIEGRSRYHLGDKENALSSLRRAQEILASKLEKEKESTPLRNIMNDITRYIEKIQRGDP*
Ga0115336_170636	Ga0115336_1706362	F074900	MAAKIVNLANPNEDETLCATLEEAEQTLAAMVERFKSQGYRVDVQHLSNEDYPQYAVYDRNDAWIGTYTIFLQ*

Scaffold ID

Protein ID

Family

Sequence

Ga0115336_104413

Ga0115336_1044131

F092086

MYNSAVRLEESTVSKYVVSLLAVIALSACSGPEDVLENIGDVSVPDQLTGCVARNDDGGCNKAVCVADEESDCKSFVKACEKHDHIVDVRDGHETCERREAAPDS*

Ga0115336_109668

Ga0115336_1096686

F030933

MNGDIESQELQRKRARAVKTAWVLGFIAVAIFATFIGSAVIGR*

Ga0115336_110162

Ga0115336_1101621

F029446

MLIIFILVTGIVVGILPGLLRLDKMFSITNIVVGFAGALIGAFLGFGDAPIFLKYPFLNEITLMVSVSFLFVVIKLSVTRKRTVP*

Ga0115336_112560

Ga0115336_1125603

F029446

MLILLILVTGIVIGMLPGIFKLDKMFSITNIVVALVGALMGAFLGFGDAPLFLKYPFLHEKSLMVAVSFLFVIIKVSITRKRNFS*

Ga0115336_113452

Ga0115336_1134522

F101189

MTDLVEIAKERQARLAAEFGRLDDFIRMAEALVKNSQSKSSKVSDTEDEKAAGGNGAEAEREDLSVRKLKAKELMLKSHTSHNEPALDRREHFKFRERA*

Ga0115336_117525

Ga0115336_1175252

F055778

MLSNVDLPEPELPTIKTTSPCSIESDTLSRALTLFSPSP*

Ga0115336_119707

Ga0115336_1197072

F019802

MGVVDAAGFRGSRQSAFELMGLNLKLFDSMFGSQSTVAPPLPTAVDFIASLPEAAPIFTTTYSPLFPGIARLLDATEILAFLSSHHSLPIDMKPAIPRFIKNVVGRIGT*

Ga0115336_123155

Ga0115336_1231552

F101189

MTDVVEIAKERQARLAAEIGKLDDFIRMAEALVKQSLSKSSKASDTEDEKAAGGNGAEAEREDLSVRELKAEELARKSRATHNEPAPDRRGFFRASETT*

Ga0115336_127613

Ga0115336_1276134

F029446

MLIIFILVTGIVVGILPGLLRLDKVFSITNIVVGFAGALVGAFLGFGDAPIFLKYPFLNEMTLMVSVSFLFVVIKVSVTRKRIVP*

Ga0115336_128303

Ga0115336_1283031

F074897

VTTIDTQFPQLDPNTRRIAEQLAREALVSAQVLSDELQQYVEELDAHSSSDEFFDHDVAKRIAALCWKLLDALPAEPDEKQHRLTQLAINYFVLAEDAQDDNYSMAGFEDDLQVV

Ga0115336_137186

Ga0115336_1371862

F074897

MTIELQFSQFDPNTRRIAEQLAREALVSVQVLSDELQQYVEQLDAHSSNADFIDHDVAMRIAALCWKLLDALPAEPDERQHRLTQLAINYFVLAEDAQDDNYSMVGFEDDLQVVTAVIHELGLTHLLEN*

Ga0115336_137932

Ga0115336_1379322

F081360

MELLLLLAVVVLGTIAWLLFRIDAKLQAIGDMIHDASKPEKQRRLTD*

Ga0115336_138285

Ga0115336_1382852

F087217

MLRLSSLIIAAASLAIAFLAVPGTVRAAGLPEGLTIEVIAEYPSMTPGVEKVLFRKLVLKPGVSWSLTVPAQSMCQATKGEAKLVDHTSGETLVLKTGDRWFTSPGHKVTLSNPGTVDHEHLFYTMVPTK*

Ga0115336_142987

Ga0115336_1429872

F074900

MAARIVNMANFSEEEMLCATVEEARATLSAMVERFELQGYNVDEQHSPDEDYLYPQYAVSDDSDGWIGTYTILPR*

Ga0115336_143744

Ga0115336_1437441

F006941

LNQTLQKVMRGFGRQCRGQGKVFVKLVRQTERKLLELGDSIELWSQKAKALLCQDTHLSEAQRERLLRDLESASDAHRQIAKQSQRLTQGKKLSQFKIVNAYDPTIAPIIKGKSNCPAQFGRKTGILSDPACGYIFANRVPKGNPSDPSYVLPMLDKVQQAIDLVT

Ga0115336_157550

Ga0115336_1575501

F095628

YMYLRDFCFCIRNPSAALAMKYGSEPFYDSWASSYAYKMRI*

Ga0115336_165294

Ga0115336_1652941

F087249

MQDTDELTTEAIRERMDAHIAAASESAEIDPANIGLIDDLAAKFLDSLTPKEMGFLMYDNPQPLSLQEVDSDIREKYRAKYGTKNLKRGQFFRLESGTITFFTHEHNLKFKVDN*

Ga0115336_167645

Ga0115336_1676452

F105207

MLLGKGHKFLENGRYQEALEKALKAKSLKLEEQFEWLCHSIEGRSRYHLGDKENALSSLRRAQEILASKLEKEKESTPLRNIMNDITRYIEKIQRGDP*

Ga0115336_170636

Ga0115336_1706362

F074900

MAAKIVNLANPNEDETLCATLEEAEQTLAAMVERFKSQGYRVDVQHLSNEDYPQYAVYDRNDAWIGTYTIFLQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008464: Deep sea sediment microbial communities from the Gulf of Mexico ? treatment with crude oil and Corexit

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences