Basic Information | |
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Family ID | F081360 |
Family Type | Metagenome |
Number of Sequences | 114 |
Average Sequence Length | 50 residues |
Representative Sequence | MGFLLFLAVVALGAIAWLLFRIDAKLQAIGDMIHDASRPEERRRLTD |
Number of Associated Samples | 23 |
Number of Associated Scaffolds | 114 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 85.96 % |
% of genes near scaffold ends (potentially truncated) | 17.54 % |
% of genes from short scaffolds (< 2000 bps) | 86.84 % |
Associated GOLD sequencing projects | 17 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.47 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (57.018 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface (58.772 % of family members) |
Environment Ontology (ENVO) | Unclassified (86.842 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) (58.772 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 57.33% β-sheet: 0.00% Coil/Unstructured: 42.67% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.47 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 114 Family Scaffolds |
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PF00903 | Glyoxalase | 3.51 |
PF01381 | HTH_3 | 3.51 |
PF00216 | Bac_DNA_binding | 3.51 |
PF01161 | PBP | 2.63 |
PF03009 | GDPD | 2.63 |
PF08238 | Sel1 | 1.75 |
PF00805 | Pentapeptide | 1.75 |
PF02353 | CMAS | 1.75 |
PF00294 | PfkB | 0.88 |
PF04392 | ABC_sub_bind | 0.88 |
PF13410 | GST_C_2 | 0.88 |
PF10276 | zf-CHCC | 0.88 |
PF12221 | HflK_N | 0.88 |
PF03480 | DctP | 0.88 |
PF03167 | UDG | 0.88 |
PF12327 | FtsZ_C | 0.88 |
PF13565 | HTH_32 | 0.88 |
PF13701 | DDE_Tnp_1_4 | 0.88 |
PF07045 | DUF1330 | 0.88 |
PF03737 | RraA-like | 0.88 |
PF02371 | Transposase_20 | 0.88 |
PF04087 | DUF389 | 0.88 |
PF00359 | PTS_EIIA_2 | 0.88 |
PF00872 | Transposase_mut | 0.88 |
PF07592 | DDE_Tnp_ISAZ013 | 0.88 |
PF01590 | GAF | 0.88 |
PF00313 | CSD | 0.88 |
PF09538 | FYDLN_acid | 0.88 |
PF13187 | Fer4_9 | 0.88 |
PF08541 | ACP_syn_III_C | 0.88 |
PF01058 | Oxidored_q6 | 0.88 |
PF12762 | DDE_Tnp_IS1595 | 0.88 |
PF05036 | SPOR | 0.88 |
PF08241 | Methyltransf_11 | 0.88 |
PF01527 | HTH_Tnp_1 | 0.88 |
COG ID | Name | Functional Category | % Frequency in 114 Family Scaffolds |
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COG0776 | Bacterial nucleoid DNA-binding protein IHF-alpha | Replication, recombination and repair [L] | 3.51 |
COG0584 | Glycerophosphoryl diester phosphodiesterase | Lipid transport and metabolism [I] | 2.63 |
COG1881 | Uncharacterized conserved protein, phosphatidylethanolamine-binding protein (PEBP) family | General function prediction only [R] | 2.63 |
COG1357 | Uncharacterized conserved protein YjbI, contains pentapeptide repeats | Function unknown [S] | 1.75 |
COG2226 | Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG | Coenzyme transport and metabolism [H] | 1.75 |
COG2227 | 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase | Coenzyme transport and metabolism [H] | 1.75 |
COG2230 | Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases | Lipid transport and metabolism [I] | 1.75 |
COG0377 | NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductase | Energy production and conversion [C] | 0.88 |
COG0684 | RNA degradosome component RraA (regulator of RNase E activity) | Translation, ribosomal structure and biogenesis [J] | 0.88 |
COG0692 | Uracil-DNA glycosylase | Replication, recombination and repair [L] | 0.88 |
COG1573 | Uracil-DNA glycosylase | Replication, recombination and repair [L] | 0.88 |
COG1740 | Ni,Fe-hydrogenase I small subunit | Energy production and conversion [C] | 0.88 |
COG1808 | Uncharacterized membrane protein AF0785, contains DUF389 domain | Function unknown [S] | 0.88 |
COG1941 | Coenzyme F420-reducing hydrogenase, gamma subunit | Energy production and conversion [C] | 0.88 |
COG2984 | ABC-type uncharacterized transport system, periplasmic component | General function prediction only [R] | 0.88 |
COG3260 | Ni,Fe-hydrogenase III small subunit | Energy production and conversion [C] | 0.88 |
COG3328 | Transposase (or an inactivated derivative) | Mobilome: prophages, transposons [X] | 0.88 |
COG3547 | Transposase | Mobilome: prophages, transposons [X] | 0.88 |
COG3663 | G:T/U-mismatch repair DNA glycosylase | Replication, recombination and repair [L] | 0.88 |
COG5470 | Uncharacterized conserved protein, DUF1330 family | Function unknown [S] | 0.88 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 57.02 % |
All Organisms | root | All Organisms | 42.98 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300005784|Ga0078431_104172 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1 | 1414 | Open in IMG/M |
3300006420|Ga0082248_10001843 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3105 | Open in IMG/M |
3300006465|Ga0082250_10004681 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2565 | Open in IMG/M |
3300006465|Ga0082250_10011658 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1744 | Open in IMG/M |
3300006465|Ga0082250_10020922 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1353 | Open in IMG/M |
3300006468|Ga0082251_10018293 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2437 | Open in IMG/M |
3300006468|Ga0082251_10038037 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales | 1759 | Open in IMG/M |
3300006468|Ga0082251_10200047 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 846 | Open in IMG/M |
3300006468|Ga0082251_10268072 | Not Available | 759 | Open in IMG/M |
3300008463|Ga0115335_111925 | All Organisms → cellular organisms → Bacteria | 1682 | Open in IMG/M |
3300008464|Ga0115336_137932 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1354 | Open in IMG/M |
3300009030|Ga0114950_10136935 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1966 | Open in IMG/M |
3300009030|Ga0114950_10321901 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 1245 | Open in IMG/M |
3300009030|Ga0114950_10346208 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1195 | Open in IMG/M |
3300009030|Ga0114950_10371357 | Not Available | 1149 | Open in IMG/M |
3300009030|Ga0114950_10453558 | Not Available | 1027 | Open in IMG/M |
3300009030|Ga0114950_10495016 | Not Available | 977 | Open in IMG/M |
3300009030|Ga0114950_10549588 | Not Available | 921 | Open in IMG/M |
3300009030|Ga0114950_10551263 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus → unclassified Methylosinus → Methylosinus sp. Ce-a6 | 919 | Open in IMG/M |
3300009030|Ga0114950_10571846 | Not Available | 900 | Open in IMG/M |
3300009030|Ga0114950_10631664 | Not Available | 851 | Open in IMG/M |
3300009030|Ga0114950_10663234 | Not Available | 827 | Open in IMG/M |
3300009030|Ga0114950_10896126 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 696 | Open in IMG/M |
3300009030|Ga0114950_11013476 | Not Available | 649 | Open in IMG/M |
3300009030|Ga0114950_11089172 | All Organisms → cellular organisms → Bacteria | 623 | Open in IMG/M |
3300009030|Ga0114950_11431502 | Not Available | 535 | Open in IMG/M |
3300009102|Ga0114948_10110923 | Not Available | 1850 | Open in IMG/M |
3300009102|Ga0114948_10136011 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1694 | Open in IMG/M |
3300009102|Ga0114948_10250962 | Not Available | 1288 | Open in IMG/M |
3300009102|Ga0114948_10262033 | Not Available | 1262 | Open in IMG/M |
3300009102|Ga0114948_10407110 | Not Available | 1024 | Open in IMG/M |
3300009102|Ga0114948_10713815 | Not Available | 777 | Open in IMG/M |
3300009102|Ga0114948_10742941 | Not Available | 762 | Open in IMG/M |
3300009102|Ga0114948_10825848 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 | 722 | Open in IMG/M |
3300009102|Ga0114948_10858334 | Not Available | 709 | Open in IMG/M |
3300009102|Ga0114948_10875305 | Not Available | 702 | Open in IMG/M |
3300009102|Ga0114948_10919926 | Not Available | 685 | Open in IMG/M |
3300009102|Ga0114948_11123325 | Not Available | 619 | Open in IMG/M |
3300009102|Ga0114948_11645356 | Not Available | 511 | Open in IMG/M |
3300009102|Ga0114948_11670543 | Not Available | 508 | Open in IMG/M |
3300009102|Ga0114948_11713456 | Not Available | 501 | Open in IMG/M |
3300009139|Ga0114949_10173202 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1702 | Open in IMG/M |
3300009139|Ga0114949_10342449 | Not Available | 1193 | Open in IMG/M |
3300009139|Ga0114949_10342770 | Not Available | 1192 | Open in IMG/M |
3300009139|Ga0114949_10446624 | Not Available | 1034 | Open in IMG/M |
3300009139|Ga0114949_10538827 | Not Available | 934 | Open in IMG/M |
3300009139|Ga0114949_11018055 | Not Available | 661 | Open in IMG/M |
3300009139|Ga0114949_11042200 | Not Available | 653 | Open in IMG/M |
3300009788|Ga0114923_10201298 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae | 1430 | Open in IMG/M |
3300009788|Ga0114923_10726185 | Not Available | 752 | Open in IMG/M |
3300009788|Ga0114923_10998270 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 642 | Open in IMG/M |
3300009788|Ga0114923_11207988 | Not Available | 586 | Open in IMG/M |
3300010933|Ga0137936_1022453 | Not Available | 711 | Open in IMG/M |
3300011112|Ga0114947_10133020 | Not Available | 1565 | Open in IMG/M |
3300011112|Ga0114947_10150075 | Not Available | 1487 | Open in IMG/M |
3300011112|Ga0114947_10192882 | Not Available | 1334 | Open in IMG/M |
3300011112|Ga0114947_10259304 | Not Available | 1170 | Open in IMG/M |
3300011112|Ga0114947_10612630 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 785 | Open in IMG/M |
3300011112|Ga0114947_10635599 | Not Available | 771 | Open in IMG/M |
3300011112|Ga0114947_10830763 | Not Available | 678 | Open in IMG/M |
3300011112|Ga0114947_11082860 | Not Available | 597 | Open in IMG/M |
3300011112|Ga0114947_11159665 | Not Available | 577 | Open in IMG/M |
3300011112|Ga0114947_11470918 | Not Available | 514 | Open in IMG/M |
3300020230|Ga0212167_1083790 | Not Available | 1126 | Open in IMG/M |
3300020230|Ga0212167_1166640 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 4112 | Open in IMG/M |
3300020230|Ga0212167_1228263 | Not Available | 1207 | Open in IMG/M |
3300020230|Ga0212167_1235230 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 2099 | Open in IMG/M |
3300020230|Ga0212167_1254933 | Not Available | 1190 | Open in IMG/M |
3300020230|Ga0212167_1260398 | Not Available | 1466 | Open in IMG/M |
3300020230|Ga0212167_1292193 | Not Available | 1975 | Open in IMG/M |
3300020230|Ga0212167_1304138 | Not Available | 1264 | Open in IMG/M |
3300020230|Ga0212167_1369200 | Not Available | 1042 | Open in IMG/M |
3300020231|Ga0212168_1002823 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium | 1594 | Open in IMG/M |
3300020231|Ga0212168_1010623 | All Organisms → Viruses → Predicted Viral | 1806 | Open in IMG/M |
3300020231|Ga0212168_1020155 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2170 | Open in IMG/M |
3300020231|Ga0212168_1043993 | Not Available | 2331 | Open in IMG/M |
3300020231|Ga0212168_1128980 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1531 | Open in IMG/M |
3300020231|Ga0212168_1412050 | Not Available | 1314 | Open in IMG/M |
3300020231|Ga0212168_1430376 | Not Available | 1220 | Open in IMG/M |
3300020234|Ga0212227_1003854 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae | 2265 | Open in IMG/M |
3300020234|Ga0212227_1016302 | All Organisms → cellular organisms → Bacteria | 4900 | Open in IMG/M |
3300020234|Ga0212227_1038085 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium | 1049 | Open in IMG/M |
3300020234|Ga0212227_1041211 | All Organisms → cellular organisms → Bacteria | 1673 | Open in IMG/M |
3300020234|Ga0212227_1072713 | Not Available | 1681 | Open in IMG/M |
3300020234|Ga0212227_1089075 | All Organisms → cellular organisms → Bacteria | 3930 | Open in IMG/M |
3300020234|Ga0212227_1175135 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2787 | Open in IMG/M |
3300020234|Ga0212227_1220283 | All Organisms → cellular organisms → Bacteria | 1250 | Open in IMG/M |
3300020234|Ga0212227_1316377 | Not Available | 1633 | Open in IMG/M |
3300020234|Ga0212227_1391344 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium | 1764 | Open in IMG/M |
3300020234|Ga0212227_1453225 | All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium W5-15b | 1064 | Open in IMG/M |
3300020235|Ga0212228_1032670 | All Organisms → cellular organisms → Bacteria | 1457 | Open in IMG/M |
3300020235|Ga0212228_1071592 | All Organisms → cellular organisms → Bacteria | 1285 | Open in IMG/M |
3300020235|Ga0212228_1389639 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2625 | Open in IMG/M |
3300020235|Ga0212228_1400113 | Not Available | 2141 | Open in IMG/M |
3300020235|Ga0212228_1401770 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 3449 | Open in IMG/M |
3300020423|Ga0211525_10045377 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 2113 | Open in IMG/M |
3300024058|Ga0209997_10112277 | All Organisms → cellular organisms → Bacteria | 1285 | Open in IMG/M |
3300024058|Ga0209997_10121792 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 1238 | Open in IMG/M |
3300024058|Ga0209997_10462718 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 621 | Open in IMG/M |
3300024058|Ga0209997_10591632 | Not Available | 537 | Open in IMG/M |
3300024058|Ga0209997_10619222 | Not Available | 522 | Open in IMG/M |
3300024060|Ga0209987_10200564 | Not Available | 1138 | Open in IMG/M |
3300024060|Ga0209987_10205289 | Not Available | 1123 | Open in IMG/M |
3300024060|Ga0209987_10433363 | Not Available | 713 | Open in IMG/M |
3300024060|Ga0209987_10612710 | Not Available | 569 | Open in IMG/M |
3300024060|Ga0209987_10732254 | All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_02_FULL_59_13 | 504 | Open in IMG/M |
3300024265|Ga0209976_10376155 | Not Available | 754 | Open in IMG/M |
3300024431|Ga0209988_10190546 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium MarineAlpha3_Bin4 | 1214 | Open in IMG/M |
3300024516|Ga0209980_10099545 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium | 1418 | Open in IMG/M |
3300024516|Ga0209980_10138945 | Not Available | 1158 | Open in IMG/M |
3300024516|Ga0209980_10179456 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum → Magnetospirillum gryphiswaldense | 988 | Open in IMG/M |
3300024516|Ga0209980_10354445 | Not Available | 640 | Open in IMG/M |
(restricted) 3300024521|Ga0255056_10325120 | Not Available | 699 | Open in IMG/M |
(restricted) 3300024521|Ga0255056_10645668 | Not Available | 502 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Deep Subsurface | Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface | 58.77% |
Sediment | Environmental → Aquatic → Marine → Oceanic → Sediment → Sediment | 34.21% |
Sediment | Environmental → Aquatic → Marine → Unclassified → Unclassified → Sediment | 1.75% |
Seawater | Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater | 1.75% |
Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 0.88% |
Marine Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment | 0.88% |
Sediment | Engineered → Bioremediation → Hydrocarbon → Unclassified → Unclassified → Sediment | 0.88% |
Sediment | Engineered → Biotransformation → Unclassified → Unclassified → Unclassified → Sediment | 0.88% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300005784 | Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IV | Environmental | Open in IMG/M |
3300006420 | Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IV | Environmental | Open in IMG/M |
3300006465 | Deep-sea sediment bacterial and archaeal communities from Fram Strait - Hausgarten IX | Environmental | Open in IMG/M |
3300006468 | Deep-sea sediment bacterial and archaeal communities from Fram Strait - Combined Assembly of Gp0119454, Gp0119453, Gp0119452, Gp0119451 | Environmental | Open in IMG/M |
3300008463 | Deep sea sediment microbial communities from the Gulf of Mexico ? control with no oil added | Engineered | Open in IMG/M |
3300008464 | Deep sea sediment microbial communities from the Gulf of Mexico ? treatment with crude oil and Corexit | Engineered | Open in IMG/M |
3300009030 | Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaG | Environmental | Open in IMG/M |
3300009102 | Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaG | Environmental | Open in IMG/M |
3300009139 | Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N074 metaG | Environmental | Open in IMG/M |
3300009788 | Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG | Environmental | Open in IMG/M |
3300010933 | Marine sediment microbial communities from North Pond, Atlantic Mid-Ocean Ridge - NP_1383E | Environmental | Open in IMG/M |
3300011112 | Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR02 metaG | Environmental | Open in IMG/M |
3300020230 | Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR02 | Environmental | Open in IMG/M |
3300020231 | Deep-sea sediment microbial communities from the Mariana Trench, Pacific Ocean - CR04 | Environmental | Open in IMG/M |
3300020234 | Deep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N074 | Environmental | Open in IMG/M |
3300020235 | Deep-sea sediment microbial communities from the Kermadec Trench, Pacific Ocean - N075 | Environmental | Open in IMG/M |
3300020423 | Marine microbial communities from Tara Oceans - TARA_B100000315 (ERX556027-ERR599062) | Environmental | Open in IMG/M |
3300024058 | Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaG (SPAdes) | Environmental | Open in IMG/M |
3300024060 | Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N074 metaG (SPAdes) | Environmental | Open in IMG/M |
3300024265 | Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00157 metaG (SPAdes) | Environmental | Open in IMG/M |
3300024431 | Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaG (SPAdes) | Environmental | Open in IMG/M |
3300024516 | Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR02 metaG (SPAdes) | Environmental | Open in IMG/M |
3300024521 (restricted) | Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_1 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0078431_1041722 | 3300005784 | Sediment | MGFLLLLAVVALGTIAWLLFRIDAKLQAIGDMIHDASKPEEQRRLTD* |
Ga0082248_100018432 | 3300006420 | Sediment | MGFLLLLAVVALGTIAWLLFRIDAKLQAIGDMIHDASRPEEQRRLAAEKHDET* |
Ga0082250_100046814 | 3300006465 | Sediment | MGFLLLLVVGGLGTIAWLLFRIDAKLQAIGDMIHDASRPEERRRLTD* |
Ga0082250_100116582 | 3300006465 | Sediment | MGFLLFLAVVALGVIAWLLFKIDAKLQAIGDMIHDASKSEEQRRLTDQA* |
Ga0082250_100209222 | 3300006465 | Sediment | MVDGKMGFLFFLAVVALGAIAWLLFRIDTKLQAIGNMIDNANSPEEPWRLTD* |
Ga0082251_100182933 | 3300006468 | Sediment | MGFLLFLAVIALGAMVWLLFKIDAKLQSIGDMINEASRPEVPRRLTD* |
Ga0082251_100380375 | 3300006468 | Sediment | MGFLFFLAVVALGVIAWLLFRIDTKLQAIGNMIHNANSPEEPWRLTD* |
Ga0082251_102000471 | 3300006468 | Sediment | MGLLLLLAVVALGAIAWLLFRIDAKLQAIGDMIHDASRPEEQRRLAAEKHDET* |
Ga0082251_102680723 | 3300006468 | Sediment | MGFLLLLVVGALGTIAWLLFRIDAKLQAIGDMIHDASKPEEKRRLTD* |
Ga0115335_1119251 | 3300008463 | Sediment | MELLLLLAVVALGTIAWLLFRIDAKLQAIGHMIHDASKPEDQRQLTD* |
Ga0115336_1379322 | 3300008464 | Sediment | MELLLLLAVVVLGTIAWLLFRIDAKLQAIGDMIHDASKPEKQRRLTD* |
Ga0114950_101369355 | 3300009030 | Deep Subsurface | MGILLLLAVVALGVIAWLLFRIDAKLQAIGNMIHDANKPEVQRLMTDENDFEKPPPSG* |
Ga0114950_103219011 | 3300009030 | Deep Subsurface | RRFRFRWEVGEMGFLLFLAVVALGAIAWLLFKIDAKLQAIGDMIHDASRPEERRRLTD* |
Ga0114950_103462082 | 3300009030 | Deep Subsurface | MGFLLLLVVVALGAIAWLLFRIDAKLQAIGNMIHDANKPEVQRLMTDKNDPEEPPPSG* |
Ga0114950_103713572 | 3300009030 | Deep Subsurface | MGFLLFLAVVALGAIAWLLFKIDAKLQAIGDMIHNASRPEERRRLTD* |
Ga0114950_104535582 | 3300009030 | Deep Subsurface | MGFLLFLAVVALGAIAWLLFRIDAKLQAIGDMIHDASRPEERRRLTD* |
Ga0114950_104950161 | 3300009030 | Deep Subsurface | MGFLLFLTVVALGAIAWLLFRIDTKLQAIGDMIHDASRPEERRRLTD* |
Ga0114950_105495882 | 3300009030 | Deep Subsurface | MGFLLLLAVVALGVIAWLLFKIDAKLQAIGDMIHDANRPEKRRRLTD* |
Ga0114950_105512631 | 3300009030 | Deep Subsurface | MGFLLFLAVVALGAITWFLFRIDTKLQEIGDMIHDAGKLEERRRRLTE* |
Ga0114950_105718462 | 3300009030 | Deep Subsurface | MGLLLFLAVAALGAIAWLLFRIDTKLQAIGNMIHDASRSEERRRLTD* |
Ga0114950_106316641 | 3300009030 | Deep Subsurface | MGFLLFLAVVALGAIAWLLFKIDAKLQAIGDMIHDANRPEERRRLTD* |
Ga0114950_106632342 | 3300009030 | Deep Subsurface | MGFLLLLTILGAIAWLLFRIDAKLQAIGDMIHNASRPEERGRLTDESQGEDTGGL* |
Ga0114950_108961262 | 3300009030 | Deep Subsurface | MGFLLLLAVVALGVIVWLLFKIDAKLQAIGDMMNDATKSEEPKRLNS* |
Ga0114950_110134761 | 3300009030 | Deep Subsurface | MGFLLFLAVVALGAIVWLLFRIDAKLQSIGDMLHDASRPEVPRRLTD* |
Ga0114950_110891721 | 3300009030 | Deep Subsurface | MAFLLFLAVVALGVIAWLLFKIDAKLQAIGDMIHDASRPEERRQLTD* |
Ga0114950_114315022 | 3300009030 | Deep Subsurface | LKDGEMGFLFFLEVVALGAMVWLLFKIDAKLQSIGDMIHDASKSEEPRRLTD* |
Ga0114948_101109232 | 3300009102 | Deep Subsurface | MGFLLFLTVVALGAIVWLLFKIDAKLQAIGDMIHDASRPEERRRLTD* |
Ga0114948_101360112 | 3300009102 | Deep Subsurface | MGFLLFLAVVALGAITWLLFRIDTKLQAIGNMIHDASRSEERRRLTD* |
Ga0114948_102509623 | 3300009102 | Deep Subsurface | MGFLLLLVVVALGAIAWLLFRIDAKLQAIGNMIHEANKPEVQRLMTDKNDLEEPPPSG* |
Ga0114948_102620332 | 3300009102 | Deep Subsurface | MGFLLLLVVVALGAIAWLLFRIDAKLQAIGDMIHDASRPEERRRLTDSDGSEEPPLPG* |
Ga0114948_104071101 | 3300009102 | Deep Subsurface | MGFLLLLVVGGLGTIAWLLFRIDAKLQAIGDMIHDASKSEEQRRLTD* |
Ga0114948_107138152 | 3300009102 | Deep Subsurface | MGFLLLLAVVALGVIAWLLFKIDAKLQAIGDMIHDANGPEKRRRLTD* |
Ga0114948_107429412 | 3300009102 | Deep Subsurface | MGFLLLLAVTALGVIAWLLFKIDAKLQAIGDMIQDASRPEEQRRLTD* |
Ga0114948_108258482 | 3300009102 | Deep Subsurface | MGFLLFLAVVALGAIVWLLFRIDAKLQSIGDMVHDASKSNEPRRLTD* |
Ga0114948_108583341 | 3300009102 | Deep Subsurface | MGFLLFLAVVALGAIAWLLFKIDAKLQAIGDMINDASKPEEQRRLTE* |
Ga0114948_108753051 | 3300009102 | Deep Subsurface | VGEMGFLLLLAVTALGVIAWLLFKIDAKLQAIGDMIQDASRPEEQRRLTD* |
Ga0114948_109199261 | 3300009102 | Deep Subsurface | MGFLLLLAVLGAIAWLLFRIDAKLQAIGDMIHNASRPEERGRLTDESQGEDTGGL* |
Ga0114948_111233252 | 3300009102 | Deep Subsurface | MGFLLFLVVVALGAIAWLLFRIDAKLQAIGDMIHDANRPEEQRLPTASEWLEAHKK* |
Ga0114948_116453562 | 3300009102 | Deep Subsurface | MGFLFFLEVVALGAMVWLLFKIDAKLQSIGDMIHDASKSEEPRRLTD* |
Ga0114948_116705431 | 3300009102 | Deep Subsurface | SDLEDGKMGFMLFLAVVALGAITWLLFKVDTKLQAIGDMINEASKPGEPRRLTD* |
Ga0114948_117134561 | 3300009102 | Deep Subsurface | MGFLLLLAVVALGVIVWLLFKIDAKLQAIGDMMNDATKSEEPRRLNS* |
Ga0114949_101732023 | 3300009139 | Deep Subsurface | MGFLLLLVVVALGAIAWLLFRIDAKLQAIGNMIHDANKPEVQRLMTDKNDPEVPPPSG* |
Ga0114949_103424493 | 3300009139 | Deep Subsurface | MGFLLLLAVVALGTIAWLLFKIDAKLQAIGDMIHDASKP |
Ga0114949_103427701 | 3300009139 | Deep Subsurface | MGFLLFLAVVALGAITWLLFRIDAKLQSIGDMIHDASRPEVPRRLTD* |
Ga0114949_104466242 | 3300009139 | Deep Subsurface | MGFLLLLVVVALGAIAWLLFRIDAKLQAIGDMIHDANRPEEQRLPTAREWLEAHKK* |
Ga0114949_105388271 | 3300009139 | Deep Subsurface | GRRRFRFRWEVGEMGFLLFLAVVALGAIAWLLFKIDAKLKAIGDMIDDASRPKERRRLTD |
Ga0114949_110180553 | 3300009139 | Deep Subsurface | MGFLLLLAVVALGVIAWLLFKIDAKLQAIGDMIQDASRPEEQRRLTD* |
Ga0114949_110422002 | 3300009139 | Deep Subsurface | MAFLLILAVVALGVIAWLLFKIDAKLQAIGDMIHDAGRPEERQQLTD* |
Ga0114923_102012982 | 3300009788 | Deep Subsurface | MGLLLLLAVVALGAIAWLLFRIDAKLQAIGDMIHDASRPEEQRRLAAEKRDET* |
Ga0114923_107261852 | 3300009788 | Deep Subsurface | MGLLLLLAVVALGVIAWLLFRIDAKLQAIGDMIHDASMPEEQRRLAAEKRERWRKSRGQS |
Ga0114923_109982701 | 3300009788 | Deep Subsurface | MGLLLLLAVVALVAIAWLLFRIDAKLQAIGDMIHDASRPEERGRLTDESQGEDTGGL* |
Ga0114923_112079882 | 3300009788 | Deep Subsurface | LTVVALGAIAWLLFRIDAKLQAIGDMIHDASRPEEQRRLAAEKGDEA* |
Ga0137936_10224533 | 3300010933 | Marine Sediment | FLLFLAVVALGAIAWLLFKIDAKLQAIGDMIHDASRPEEQRRLTD* |
Ga0114947_101330202 | 3300011112 | Deep Subsurface | MGFLFFLAVVALGAMAWLLYRIDTKLQAIGDMIHDASTPEEPRRLTD* |
Ga0114947_101500753 | 3300011112 | Deep Subsurface | MGFLFFLAVVALGAMVWLLFKIDAKLQSIGDMIHDAGKSEEPRRLTD* |
Ga0114947_101928823 | 3300011112 | Deep Subsurface | MGFLLLLAVVALGVIAWLLFKIDAKLQAIGDMIHDASRPEEQRRLTD* |
Ga0114947_102593042 | 3300011112 | Deep Subsurface | MGFLLLLAVVALGVIAWLLFKIDAKLQAIGDMIHNASRPEEQRRLTD* |
Ga0114947_106126301 | 3300011112 | Deep Subsurface | MGFLLFLVVVALGAIAWLLFRIDAKLQAIGNMIHEANKPEVQRLMTDKNDLEEPPPSG* |
Ga0114947_106355992 | 3300011112 | Deep Subsurface | MGFLLFLTVVALGVIAWLLYKIDAKLQAIGDMIHDASRPEERRQLTD* |
Ga0114947_108307632 | 3300011112 | Deep Subsurface | MGFLLFLAVVALGVIAWLLFKIDAKLQAIGDMIHDANRPKERRRLTD* |
Ga0114947_110828601 | 3300011112 | Deep Subsurface | MGFLLVLVVVALGVIAWLLFRIDAKLQAIGDMIHDANRPEEQRLLTAREWLEAHKK* |
Ga0114947_111596652 | 3300011112 | Deep Subsurface | MGFLLLLVVGALGTIAWLLFRIDAKLQAIGDMIHDASKPEEQRRLTD* |
Ga0114947_114709182 | 3300011112 | Deep Subsurface | MGVGEMGSLLLLVVALGAIAWLLFRIDAKLQAIGDMIHDASRPEERRRLTDRGTVPENPEPD* |
Ga0212167_10837901 | 3300020230 | Sediment | MGFLFFLAVVALGAMAWLLYRIDTKLQAIGDMIHDASTPEEPRRLTD |
Ga0212167_11666403 | 3300020230 | Sediment | MGFLLFLAVVALGAIAWLLFRIDAKLQAIGDMIHDASRPEERRRLTD |
Ga0212167_12282632 | 3300020230 | Sediment | MGFLFFLAVVALGAMVWLLFKIDAKLQSIGDMIHDAGKSEEPRRLTD |
Ga0212167_12352304 | 3300020230 | Sediment | MGFLLLLVVGALGTIAWLLFRIDAKLQAIGDMIHDASKPEEQRRLTD |
Ga0212167_12549333 | 3300020230 | Sediment | MGFLLLLAVVALGVIAWLLFKIDAKLQAIGDMIHDASRPEEQRRLTD |
Ga0212167_12603983 | 3300020230 | Sediment | MGFLLLLAVTALGVIAWLLFKIDAKLQAIGDMIQDASRPEAQRRLTD |
Ga0212167_12921932 | 3300020230 | Sediment | MGFLLFLAVVALGAIAWLLFKIDAKLQAIGDMIHNASRPEERRRLTD |
Ga0212167_13041381 | 3300020230 | Sediment | MGFLLFLTVVALGVIAWLLYKIDAKLQAIGDMIHDAS |
Ga0212167_13692002 | 3300020230 | Sediment | MGFLLFLTVVALGAIVWLLFKIDAKLQAIGDMIHDASRPEERRRLTD |
Ga0212168_10028232 | 3300020231 | Sediment | MGFLLFLAVVALGAITWLLFRIDTKLQAIGNMIHDASRSEERRRLTD |
Ga0212168_10106233 | 3300020231 | Sediment | MGFLLLLAVTALGVIAWLLFKIDAKLQAIGDMIQDASRPEEQRRLTD |
Ga0212168_10201551 | 3300020231 | Sediment | MGFLLFLAVVGLLGAIAWLLFRIDAKLQAIGDMIQNASRPKE |
Ga0212168_10439933 | 3300020231 | Sediment | MGFLLLLVVVALGAIAWLLFRIDAKLQAIGDMIHD |
Ga0212168_11289804 | 3300020231 | Sediment | MGFLLLLVVVALGAIAWLLFRIDAKLQAIGNMIHEANKPEVQRLMTDKNDLEEPPPSG |
Ga0212168_14120502 | 3300020231 | Sediment | MAFLLFLAVVALGVIAWLLFKIDAKLQAIGDMIHDASRPEERRQLTD |
Ga0212168_14303762 | 3300020231 | Sediment | MGFLLFLVVVALGAIAWLLFRIDAKLQAIGDMIHDANRPEEQRLPTASEWLEAHKK |
Ga0212227_10038542 | 3300020234 | Sediment | MGFLLFLAVIALGAITWFLFRIDTKLQEIGDMIHDAGKLEERRRRLTE |
Ga0212227_10163026 | 3300020234 | Sediment | MGILLLLAVVALGVIAWLLFRIDAKLQAIGNMIHDANKPEVQRLMTDENDFEKPPPSG |
Ga0212227_10380853 | 3300020234 | Sediment | MGFLLLLAVVALGVIAWLLFKIDAKLQAIGDMIHDANRPEKRRRLTD |
Ga0212227_10412112 | 3300020234 | Sediment | MAFLIFLAVVALGVIAWLLFKIDAKLQAIGDMIHDASRPEERRQLTD |
Ga0212227_10727133 | 3300020234 | Sediment | MGFLLFLAVVALGAITWLLFRIDAKLQSIGDMIHDASRPEVPRRLTD |
Ga0212227_10890754 | 3300020234 | Sediment | MGFLLLLIVVALGAIAWLLFKIDTKLQAIGNMIHDANRPEEQRLMTDKNDSEDPPLPG |
Ga0212227_11751351 | 3300020234 | Sediment | RRFRFRWEVGEMGFLLFLAVVALGAIAWLLFKIDAKLQAIGDMIHDASRPEERRRLTD |
Ga0212227_12202831 | 3300020234 | Sediment | MGFLLLLVVVALGAIAWLLFRIDAKLQAIGDMIHDASRPEERRRLTDSDGSEEPPLPG |
Ga0212227_13163775 | 3300020234 | Sediment | MGFLLLLAVVALGVIAWLLFKIDAKLQAIGDMIQDASRPEEQRRLTD |
Ga0212227_13913443 | 3300020234 | Sediment | MGFLLLLAVIALGVIAWLLFKIDAKLQAIGDMMNDATKSEEPRRLN |
Ga0212227_14532251 | 3300020234 | Sediment | MGFLLLLVVGALGTIAWLLFRIDAKLQAIGDMIHDASKSEEQRRLTD |
Ga0212228_10326704 | 3300020235 | Sediment | LLAVVALGVIAWLLFKIDAKLQAIGDMILDASKPERSDGG |
Ga0212228_10715921 | 3300020235 | Sediment | MGFLLFLAVVALGAIAWLLFKIDAKLQAIGDMIHDANRPEERRRLTD |
Ga0212228_13896394 | 3300020235 | Sediment | MGFLLLLVVVALGAIAWLLFRIDAKLQAIGNMIHDANKPEVQRLMTDKNDPEEPPPSG |
Ga0212228_14001135 | 3300020235 | Sediment | MGFLLLLAVTALGVIAWLLFKIDAKLQAIGDMIHDASRPEEQRRLTD |
Ga0212228_14017708 | 3300020235 | Sediment | MGFLLLLAVVALGVIAWLLFRIDAKLQAIGNMIHDANKPEVQRLMTDENDFEKPPPSG |
Ga0211525_100453774 | 3300020423 | Marine | MGFLLFLAVVALGVIAWLLFKIDAKLQAIGDMIHDVSKPEERKRLNPH |
Ga0209997_101122772 | 3300024058 | Deep Subsurface | MGFLLLLVVVALGAIAWLLFRIDAKLQAIGDMIHDASRPEERRRLTDSDGSEEPPLSG |
Ga0209997_101217921 | 3300024058 | Deep Subsurface | GSRRFRFRWEVGEMGFLFFLAVVALGAIAWLLFKIDAKLQAIGDMIHDASRPEERRRLTD |
Ga0209997_104627181 | 3300024058 | Deep Subsurface | MGFLLFLVVVALGAIAWLLFRIDAKLQAIGDMIHDANNPEVQR |
Ga0209997_105916321 | 3300024058 | Deep Subsurface | MGFLLFLAVVALGAIAWLLFKIDAKLQAIGDMINDASKPEEQRRLTE |
Ga0209997_106192221 | 3300024058 | Deep Subsurface | MAFLLFLAVVALGVIAWLLFKIDAKLRAIGDMIHDASRPEERRQLTD |
Ga0209987_102005644 | 3300024060 | Deep Subsurface | EVGEMGFLLLLAVTALGVIAWLLFKIDAKLQAIGDMIQDASRPEEQRRLTD |
Ga0209987_102052891 | 3300024060 | Deep Subsurface | MGFLLLLVVGGLGTIAWLLFRIDAKLQAIGDMIHDASKSEEQRRLTD |
Ga0209987_104333631 | 3300024060 | Deep Subsurface | MGFLLFLAVVALGAITWFLFRIDTKLQEIGDMIHDAGKLEERRRRLTE |
Ga0209987_106127102 | 3300024060 | Deep Subsurface | RRFRFRWEVGEMGFLLFLAVVALGAIAWLLFKIDAKLQAIGDMIHNASRPEERRRLTD |
Ga0209987_107322542 | 3300024060 | Deep Subsurface | MGFLLFLAVVALGAIVWLLFRIDAKLQSIGDMVHDASKSNEPRRLTD |
Ga0209976_103761551 | 3300024265 | Deep Subsurface | MGIFLLLTVVALGAIAWLLFRIDAKLQAIGDMIHDASRPEE |
Ga0209988_101905461 | 3300024431 | Deep Subsurface | MGFLLLLTILGAIAWLLFRIDAKLQAIGDMIHNASRPEERGRLTDESQGEDTGGL |
Ga0209980_100995454 | 3300024516 | Deep Subsurface | RWEVGEMGFLLFLAVVALGAIAWLLFKIDAKLQAIGDMIHDASRPEERRRLTD |
Ga0209980_101389452 | 3300024516 | Deep Subsurface | MGFLFFLAVVALGAIAWLLFRIDTKLQAIGNMIHNANSPEEPWRLTD |
Ga0209980_101794563 | 3300024516 | Deep Subsurface | MAFLLFLAVVALGVIAWLLFKIDAKLRAIGDMIHDASRPEERR |
Ga0209980_103544451 | 3300024516 | Deep Subsurface | MGFLLLLAVVALGVIAWLLFKIDAKLQAIGDMIHDANRPKERRRLTD |
(restricted) Ga0255056_103251203 | 3300024521 | Seawater | VGEIGFLLFLAVVALGAIAWLLFKIDAKLQAIGDMIHDASRPEERRRLTD |
(restricted) Ga0255056_106456681 | 3300024521 | Seawater | MGFLLLLAVVALCTIAWLLFRIDAKLQAIGEMIHDASKPEEQRRLTD |
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