| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300006061 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0116717 | Gp0121246 | Ga0081201 |
| Sample Name | Microbial communities from petroleum pipeline sediment, Khambat, Gujarat, India |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Anand Agricultural University |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 33242648 |
| Sequencing Scaffolds | 7 |
| Novel Protein Genes | 7 |
| Associated Families | 5 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057 | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Microbial Communities From Petroleum Pipeline Sediment, Khambat, Gujarat, India |
| Type | Engineered |
| Taxonomy | Engineered → Industrial Production → Engineered Product → Unclassified → Unclassified → Petroleum Sediment → Microbial Communities From Petroleum Pipeline Sediment, Khambat, Gujarat, India |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | Unclassified |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Sediment (non-saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Khambat, Gujarat, India | |||||||
| Coordinates | Lat. (o) | 22.172778 | Long. (o) | 72.983333 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008775 | Metagenome / Metatranscriptome | 328 | Y |
| F068106 | Metagenome / Metatranscriptome | 125 | Y |
| F090845 | Metagenome | 108 | Y |
| F096016 | Metagenome | 105 | Y |
| F105852 | Metagenome | 100 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0081201_102261 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 2777 | Open in IMG/M |
| Ga0081201_103104 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057 | 2182 | Open in IMG/M |
| Ga0081201_105930 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas | 1322 | Open in IMG/M |
| Ga0081201_105944 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas | 1320 | Open in IMG/M |
| Ga0081201_108830 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057 | 983 | Open in IMG/M |
| Ga0081201_110649 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas | 866 | Open in IMG/M |
| Ga0081201_120589 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae | 565 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0081201_102261 | Ga0081201_1022614 | F008775 | MEHPRISSIHVHMNRILFRDLPAVAAVERQLRLHSLDRLLDDEVEELPHLIDDASLELFGITERDTFHWALPDAVHAQYGRAEWEAQFDLLGHYTRDPNAHWHAFDLDLRCEEGGRLHCLEVFGRQLVCALHGLHPQAVLVFAQPETAQAA* |
| Ga0081201_103104 | Ga0081201_1031041 | F090845 | PAASAIVLDTAMGLELIAARGEVASPDDPRLIEKLVLEDEESSVGTLLIGRRSDGNRYNRQEMDAIREIIPSLAEALRVARGRFSRESAMHQRMEEMAARLAQLEGGTPKPA* |
| Ga0081201_105930 | Ga0081201_1059302 | F096016 | MKWASALLLGAILGFVLPTGLDMRSGVWMHSWAGWGTVHPHVNSPGLLFSWPLFLGSAIALRLVFNWHTR* |
| Ga0081201_105944 | Ga0081201_1059442 | F068106 | MPMMTTVIAVALGLAPIPADGTVPFVGADTEKMIGRYSETVDDTGTTHLRGVNRRTGQLYHITVNPYGRVEGSVGDWTVSFNVKTST* |
| Ga0081201_108830 | Ga0081201_1088301 | F096016 | MKWASALLLGAILGFVLPTGLDMRSGVWMNSWAAWGTVHPHVNSPGLLFSWPLFAGSAIALRTVFQWHTR* |
| Ga0081201_110649 | Ga0081201_1106491 | F008775 | MEHLRISSIHVPMNRILFRDLPAVDAVERQLRLHALDRLLDDEVEELPHLIDDASLELFGITERDTFHWALPDEVRAQYGRAEWEAHFDVLGRYTRDPNAHWHGFGLDVRCPEGGRLHCLEVFGRQLVCAFHGLHPRASSPSPNARPPKRPRPHKETAARCPERRSFPFPV* |
| Ga0081201_120589 | Ga0081201_1205892 | F105852 | MAHDEEPLLANPPSAEAAYHVRDYERFTKLLKYGAIICFIIGFLVVLIIS* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |