Sample 3300004074

Overview

Basic Information
IMG/M Taxon OID	3300004074 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101403 \| Ga0055518
Sample Name	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqA_D1
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	655948080
Sequencing Scaffolds	57
Novel Protein Genes	60
Associated Families	55

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	4
All Organisms → cellular organisms → Bacteria → Proteobacteria	3
Not Available	12
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	2
All Organisms → cellular organisms → Bacteria	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	3
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Candidatus Magnetoglobus → Candidatus Magnetoglobus multicellularis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus sonorensis	1
All Organisms → cellular organisms → Archaea	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GM33	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria → Candidatus Peribacteria → Candidatus Peribacterales → Candidatus Peribacteraceae → unclassified Candidatus Peribacteraceae → Candidatus Peribacteraceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Balneatrichaceae → Balneatrix → Balneatrix alpica	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	38.131752	Long. (^o)	-122.266335	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F001115	Metagenome / Metatranscriptome	774	Y
F002477	Metagenome / Metatranscriptome	555	Y
F005564	Metagenome / Metatranscriptome	396	Y
F007249	Metagenome / Metatranscriptome	355	Y
F008627	Metagenome / Metatranscriptome	330	Y
F015245	Metagenome / Metatranscriptome	256	Y
F016664	Metagenome / Metatranscriptome	245	Y
F017375	Metagenome	241	Y
F018371	Metagenome / Metatranscriptome	235	Y
F020359	Metagenome / Metatranscriptome	224	Y
F023385	Metagenome / Metatranscriptome	210	Y
F023904	Metagenome / Metatranscriptome	208	Y
F024904	Metagenome	204	Y
F025176	Metagenome	203	Y
F025254	Metagenome / Metatranscriptome	202	Y
F026412	Metagenome	198	Y
F029294	Metagenome	189	Y
F030371	Metagenome / Metatranscriptome	185	Y
F035989	Metagenome	171	Y
F036770	Metagenome / Metatranscriptome	169	Y
F038919	Metagenome / Metatranscriptome	165	Y
F039145	Metagenome / Metatranscriptome	164	Y
F045163	Metagenome / Metatranscriptome	153	Y
F045186	Metagenome / Metatranscriptome	153	Y
F046228	Metagenome / Metatranscriptome	151	Y
F047210	Metagenome	150	Y
F048676	Metagenome / Metatranscriptome	148	Y
F050967	Metagenome / Metatranscriptome	144	Y
F052687	Metagenome	142	Y
F053305	Metagenome / Metatranscriptome	141	Y
F054044	Metagenome / Metatranscriptome	140	Y
F055469	Metagenome / Metatranscriptome	138	Y
F060099	Metagenome	133	Y
F061357	Metagenome / Metatranscriptome	132	Y
F061999	Metagenome / Metatranscriptome	131	Y
F062887	Metagenome / Metatranscriptome	130	Y
F068992	Metagenome / Metatranscriptome	124	Y
F070125	Metagenome / Metatranscriptome	123	N
F074891	Metagenome / Metatranscriptome	119	Y
F074893	Metagenome / Metatranscriptome	119	Y
F077325	Metagenome	117	Y
F078289	Metagenome / Metatranscriptome	116	N
F080179	Metagenome	115	Y
F082716	Metagenome	113	Y
F082775	Metagenome / Metatranscriptome	113	Y
F084255	Metagenome / Metatranscriptome	112	Y
F087912	Metagenome	110	Y
F090405	Metagenome / Metatranscriptome	108	Y
F093897	Metagenome	106	Y
F100461	Metagenome / Metatranscriptome	102	N
F103291	Metagenome	101	Y
F105198	Metagenome / Metatranscriptome	100	Y
F105200	Metagenome / Metatranscriptome	100	Y
F105202	Metagenome	100	Y
F105217	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0055518_10000606	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Ignavibacteriae → Ignavibacteria → Ignavibacteriales	3813	Open in IMG/M
Ga0055518_10001132	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	3227	Open in IMG/M
Ga0055518_10004200	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2166	Open in IMG/M
Ga0055518_10004702	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	2081	Open in IMG/M
Ga0055518_10005384	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1991	Open in IMG/M
Ga0055518_10006672	All Organisms → cellular organisms → Bacteria → Proteobacteria	1856	Open in IMG/M
Ga0055518_10008162	Not Available	1729	Open in IMG/M
Ga0055518_10011971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	1511	Open in IMG/M
Ga0055518_10012127	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1505	Open in IMG/M
Ga0055518_10012643	Not Available	1483	Open in IMG/M
Ga0055518_10013276	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
Ga0055518_10013321	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8	1455	Open in IMG/M
Ga0055518_10016767	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	1337	Open in IMG/M
Ga0055518_10022942	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	1193	Open in IMG/M
Ga0055518_10026427	Not Available	1133	Open in IMG/M
Ga0055518_10028567	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
Ga0055518_10030687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1072	Open in IMG/M
Ga0055518_10033135	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	1043	Open in IMG/M
Ga0055518_10038370	Not Available	989	Open in IMG/M
Ga0055518_10047121	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	915	Open in IMG/M
Ga0055518_10066665	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	804	Open in IMG/M
Ga0055518_10082943	Not Available	740	Open in IMG/M
Ga0055518_10087306	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
Ga0055518_10089784	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	718	Open in IMG/M
Ga0055518_10092771	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Sandaracinaceae → Sandaracinus → Sandaracinus amylolyticus	709	Open in IMG/M
Ga0055518_10097553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	695	Open in IMG/M
Ga0055518_10098647	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	692	Open in IMG/M
Ga0055518_10099894	Not Available	689	Open in IMG/M
Ga0055518_10116138	Not Available	649	Open in IMG/M
Ga0055518_10117181	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	647	Open in IMG/M
Ga0055518_10126252	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
Ga0055518_10127303	All Organisms → cellular organisms → Bacteria → Proteobacteria	627	Open in IMG/M
Ga0055518_10128582	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Candidatus Magnetoglobus → Candidatus Magnetoglobus multicellularis	624	Open in IMG/M
Ga0055518_10129280	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
Ga0055518_10136466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	610	Open in IMG/M
Ga0055518_10136475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus sonorensis	610	Open in IMG/M
Ga0055518_10137764	Not Available	608	Open in IMG/M
Ga0055518_10138179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	607	Open in IMG/M
Ga0055518_10139073	All Organisms → cellular organisms → Archaea	606	Open in IMG/M
Ga0055518_10139178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. GM33	605	Open in IMG/M
Ga0055518_10139550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → unclassified Xanthomonadales → Xanthomonadales bacterium	605	Open in IMG/M
Ga0055518_10144088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium leguminosarum	597	Open in IMG/M
Ga0055518_10144494	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
Ga0055518_10154051	Not Available	582	Open in IMG/M
Ga0055518_10158589	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Peregrinibacteria → Candidatus Peribacteria → Candidatus Peribacterales → Candidatus Peribacteraceae → unclassified Candidatus Peribacteraceae → Candidatus Peribacteraceae bacterium	575	Open in IMG/M
Ga0055518_10161131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Balneatrichaceae → Balneatrix → Balneatrix alpica	572	Open in IMG/M
Ga0055518_10166311	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon	565	Open in IMG/M
Ga0055518_10166591	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
Ga0055518_10180519	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	546	Open in IMG/M
Ga0055518_10188385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	537	Open in IMG/M
Ga0055518_10191954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
Ga0055518_10194085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	530	Open in IMG/M
Ga0055518_10197795	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	526	Open in IMG/M
Ga0055518_10198185	Not Available	526	Open in IMG/M
Ga0055518_10211396	Not Available	512	Open in IMG/M
Ga0055518_10217604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	505	Open in IMG/M
Ga0055518_10222177	Not Available	501	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0055518_10000606	Ga0055518_100006062	F052687	MLETVIRKSIETMVKFLTIVLLLTALGGGTYYLLSMETVEDVKVMGKLQISEQYGSYVMASQSKDANYYAVVEGKVKNNMKKPIKNVFIKYVIAGKETSATIFDLAPGQELHFNTSGVATTGSSPEYDFVGIYYD*
Ga0055518_10001132	Ga0055518_100011324	F103291	MEMFGLSPVFATILIVSMGVILQNFLGWLKSKEDYDIKNALASTIIAFIVGITIIGPQIEAIQDQMLSELSELTIFASLIASIAGFDVLTKNVFKIANSKIHLQNKPI*
Ga0055518_10004200	Ga0055518_100042002	F090405	MKAALAFVFAIGLLVPGIAASDPSDCGRLMYQINHFEGMADRAEALGRDDWAEKTQRHVDVLETRLANRCPAFSARDEQQEAARQMALLLKMAATAAAKFFTMGMY*
Ga0055518_10004702	Ga0055518_100047022	F080179	MAVAAKSVTSTRPVDIRVRFEPGLGMALYASVAPGEVGSVTVARNLGRGRVMLRYRGFTLMTQGAPDWRDGESFSVVVKEVGPPLLLASTNRTAKDDQRVTTVDSAVVPGGGESAEAGR*
Ga0055518_10005384	Ga0055518_100053841	F077325	MSDKGNWTEKDEVAIHAIIVNMLNQKQMFQDLGKTTILPNSFNIKNSNEYILGLFTGIVINLFANYWVGEHESGLSPEDLSYLYYKISLFREEIVSGLFD*
Ga0055518_10006672	Ga0055518_100066722	F020359	MAVSKRTGGRKGAEEFWSKVLAAPKVKRILEKRGFSPEAFQRDYEADTSRGPRTPKRPSRSQIDAVEAFQRSGDFEALKRALSTESSAVANSTLRRVVQFTALGGVKTVRRQSGM*
Ga0055518_10008162	Ga0055518_100081623	F062887	MPVKQCSGGHKFGNKGKCYKGKGSKAKAARQGRAIKASQAKRGK*
Ga0055518_10011971	Ga0055518_100119713	F084255	MESSRRYLLQAEIEYWHEMLKLNKNRVSRNRQEEMRHCLKKAVRALNTSARSEFRVAA*
Ga0055518_10012127	Ga0055518_100121271	F025254	MEESVREMVFLIVEQLKAYVDGDEDALLELTQVLDSGRHDADVVNQAFELIFRALEPYAREDFSEDPTTPRRSVRVPTGSERALLDAPGYQYLYGLIEQGRISPEQFEEIMSRVREDTSFLDTEASAKELATTVLIRWFDDEHGVEFDPSNPAWVH*
Ga0055518_10012643	Ga0055518_100126432	F053305	MLKKSVSMGLMALFVFSFIAVATVSADETQKITGTVMSVNVETGEVIVKDDAGEMKSLMADPKAEGAVDLKMLKEGDPVSVESDSNGVIKSLKAGE*
Ga0055518_10013276	Ga0055518_100132761	F061999	RGILRGLEPKKIDVQMLHRNPPRLGEMLGEDDWFDKLGPKGRDYTRAAYMARLHAFTEQCRQRILRGGPPRPTR*
Ga0055518_10013321	Ga0055518_100133211	F055469	MLKRTVVILAAAAFFWGTVPTQTAQARDDIWDLMNPSWWADKMFDNDDDWRHYRHYAYNPYWGGPYAQRPRVIVIQPPETEAQNPDTRPPE*
Ga0055518_10016767	Ga0055518_100167674	F024904	MVEPAQIVSNPAVECLRCGKLFGPNQIFHLKEDPRRPYLRCQHCGAKNEIRAEERFCIRLIGIIPEPAASRPGA*
Ga0055518_10020261	Ga0055518_100202612	F105200	MKPVQGRHRRRNVPDSFERKLGQLLEYSDAPHAEAFTMNVMRSVRREQRRRKIILWSFGLVGALFGLSGALMLTGPVSELLTVSLQMPVMKTMQVTLFVVGATAFYLWFMNDDFSLGS*
Ga0055518_10022942	Ga0055518_100229422	F054044	MISKYYSNSDIFSVPADRLGISHTVGLLVLVFALTALILLFVDSSFRSAPDQEECLQLVRALGLNSLSLAPSGRPLRNPGAIDPSIDLRFGPKFGRLPIDGADLF*
Ga0055518_10026427	Ga0055518_100264272	F018371	MDYSNIIKPKRLTDMQEMEVYVNGPEGANRLFMHSGMAEVEIRGGLPHPRWTLEVVCFELGRTYDLSEESIIKINASAALAGGRMDGVASFAGWQVFGAAGELDNESRRVRMNIAAGARDTQAFLEQISFQINILARVKE*
Ga0055518_10028567	Ga0055518_100285671	F020359	MAARQSRRHKTPDEFWSKVLAAPKVKRILERRGVSPDDFQRDYEADNSRGARTPKRPTRGQIDAVEAFQKSGDFEAFKRALSTNSSAVANSALRRVVQFKAMGGSKTIRRRGGAENA*
Ga0055518_10030687	Ga0055518_100306871	F005564	MEPLKQWLVTEYDMNKIFFVLMIIFFAGDPGMESLSWLGDMKIYVVTAAVALCSMPFIASQLDG*
Ga0055518_10033135	Ga0055518_100331352	F082716	MISKKDIRLMPFTFIIAPILLISLTFVVVTAYYDVIEEKEFIAGLSCPELMIYTDKQTIESKLYFGNENYLIYAEERLHNMC*
Ga0055518_10038370	Ga0055518_100383701	F050967	MNTGKDKAMGKPPIRKDYFESECGCRRWYESVPGGPVEELEEVVEYCETHDIESGSA
Ga0055518_10047121	Ga0055518_100471212	F015245	VGEECKRLFKEVPESNRLIEIMFGYHPKASAAHGIADPMHWELISKMPWAGLGTPRKHPKFRHMDGSVFNGQLYIDDRLVVDKHGMLDRSLLHHPEVLEVAAEFGDPYQVLAPVSHEAHGSNTAW*
Ga0055518_10066665	Ga0055518_100666652	F061357	MADPESLEQRLALLEGVTFSPADLEAIATEIEDNLRVVVELEDFAKDTPWISHQAQPVGRKS*
Ga0055518_10082943	Ga0055518_100829431	F039145	MKYFLMSLLLPLILLAGCSQEGVQAPLELSAFIEELQENGVDGSLTIRGPVNEDMQYVAEYALAKYTSTRIISLFKCKDAEKAAANLEEALKNPKLSGQASNGTFIMAATFYPPDAEAVEKIKALFLAHEFR*
Ga0055518_10087306	Ga0055518_100873061	F035989	MRGCGQRHTMTPEDIHHLRKIGRAAAGGTDYFGSFAEVRGAHYRRGYDGELFYILGAEVIEAVHRATGDTQRLPWTDLDGRAVNRPGKDTLDTIEDL
Ga0055518_10089784	Ga0055518_100897842	F045163	VDKTTAALIREREEAVANARLTQDAARHVQSLEDLAEIFLRADSYLPALQNLEECLHAAERLGLDSERIAALEIKAAQVHIEKGDAASALRHLARARARTVAEASPE
Ga0055518_10092771	Ga0055518_100927711	F105202	SISALKPEEYSGEIDKYNKIIQSDLHLDIQQRAHLYLASLYFSPMNPKRDYGLALEHLETYALFDPDFANAVDPRLLLAAIIEIERFSALAEAQTKEIQALSQELDILKRQSAAFRGSRQDIQSANLKLQKRIGQLQKKVRNLETSNAKLNKTIEMLSTLDSRLKEKRINFIKTDSIEEK
Ga0055518_10097553	Ga0055518_100975532	F016664	MDQAVHQIPPQSVTTHTVEVVVHLSDQMNDQQRHNLVVALENAQGIVSAEFCILRNHLMLVRYDRDQSSSQDVLKEFENQKVNAKLIGPI*
Ga0055518_10098647	Ga0055518_100986471	F023904	MEFTIIDADAHHLDGPAYKNYLPEKFRARSGPYFPSFGWDIFLNGTTGRKPANPAEYCKDLDVEKIGDAVAYPSNALSIGLV
Ga0055518_10099894	Ga0055518_100998941	F025176	MPGGRGGVVFPLTLVAVGVLLLLKEFGYLKYPILKYWPVLLIVWGVGMIWA
Ga0055518_10116138	Ga0055518_101161381	F029294	IEEDNKQIADIVDANKHLREPYWIVVFAKPSKNCVDGKPTLIKHIKAYKTEPSSQVGMIAGKVDNAKGTIDWEVNMPQRPFNFDALPGLGAKACDELVVETTTIPGAYVTQ*
Ga0055518_10117181	Ga0055518_101171811	F023385	LRLIFQQRRKTGQLDLESVELALRASLHRAGSAALSELLSFPAPDREQRRLPCACGGQVHYRELRSKRVLTVLGEVEVSRPYYLCPHCSQGQFPADRE
Ga0055518_10126252	Ga0055518_101262521	F068992	VGVFGSDLALLRWPRGLALTLLDTLPVAKRAFTRAMLFGLG*
Ga0055518_10127303	Ga0055518_101273031	F105198	SAYFAWGIGQQTCIDFVTAKAEYDHARDRRTHLAQLNWIKGFITGINWSRNSDIAKDLSIETVDEWIDAYCRANTDKTIAEASAELVVHLEKQGQASE*
Ga0055518_10128582	Ga0055518_101285821	F078289	MKTAVSIFILIIVVFPLYGFNSLVRHEDIPKMRELGISQEVIQYIISNQTSSVSSEDVIKMKQSGLNNNDIMSAIKSDLYRPEQKSTSMKEVELIAKLKESGMSDEAVLQFIQTVKSTRRVDSDGNVTKQYTNESQRTQYPTTGATFPKLDNYGYDPSNGRFLFFIKPQNQE*
Ga0055518_10129280	Ga0055518_101292801	F038919	FELPSGSGKQANPYRWKIQDIGAPQFQLQVSELDALLERTAEAGYRILSIGAKPIQRPFGRFVFVTDADGVLVEFVEPRTSQ*
Ga0055518_10136466	Ga0055518_101364661	F082775	MSEPDILYPAIFVFSMLLIGLLLTMWEFSRLYKRQQQKEENDKRFTGLDSRVYRENVRNVSH
Ga0055518_10136475	Ga0055518_101364751	F046228	MKRIRSVLSPMITAAGLVALSGVGLAQSPSDSHREASARAHEIMSSAPCPLPRVTKEKITEDQGRDLAQAFADKNMNGFKVVRPLGYGGGYTTMCYQTANAAPARPLVLYSVEYSVDVKNAAGEMRNLCVDQYGTVSEFCSDSGGMAGAIGPMGPMGPAGPTGAQGPAG
Ga0055518_10137764	Ga0055518_101377642	F045186	MNSPIGMCSTKSNPMKKAKQVSSMCGPGMNPDQRKANGLLQKAYKQQDSLRGMSGM*
Ga0055518_10138179	Ga0055518_101381792	F074891	PPRGQEMSAVTHDIVRKPRAGKKRKQGIAALRMLRRALARRKLEQMRDEELLREQIYDVFEDKSGPG*
Ga0055518_10139073	Ga0055518_101390731	F105217	RLFYAEINLEKIPTFIPLDIFPKDKIASEIAIDGFLFYANAALDLVFVEINKKLELELSPNQINPENIMSNLNNKNSNDAKTILEEFQKYFQKPIHEEKIISDKEFNNGLNRYGFDVIGFHAEYEARGQVKYQHFWNRASSRLWEIRNQQDLESYDSLLKNAGKRGKDEPRNYLRVKLADDNRPSVYWDSAHYENPKRYFTN
Ga0055518_10139178	Ga0055518_101391781	F007249	MAKKIREFMTHREPSEHIWMERDESALIGTVRMGKRTVPHIRPFELVRNTPLSGNRARVTVFEGDALQVATEHVAGRESQFTRAADYDIVYLQFCGRSKIESEGGVIEMEPGEIALVPSAISHRTIGMDDCLRMRVATQEAVTEGVDPEKPTTQNKF
Ga0055518_10139550	Ga0055518_101395502	F084255	EYLPRQNAAPDWAKDMESSRRYLLQAEIEYWHEMLQLNKNRVSRIRQEEMRNCLKKALRALNSSMASDFSVAA*
Ga0055518_10144088	Ga0055518_101440881	F047210	VLKLIVAILLLLPAFAQAQKLEQLVAEAKKEGEVTLVASTRTFGGKKGFAELETLFAKRYGFKAKLNLSGGPSFPQMAARVITEQKAGSKSSTDLYLGSDGTFADMHEAKALEKINWAGIFPWVTKEMEITPQESLLVYSSFHGIIYNSNAIPKDKAPKGYEDLIDPALSPTWAGKMAIPSY
Ga0055518_10144494	Ga0055518_101444942	F017375	HEVARYVSTYHKLDLQLAEKALTSQMLGYSKDGTKPRAAVEKEIEIYREALKVAKAFTPDDLEDMSWLRKAQGRSS*
Ga0055518_10154051	Ga0055518_101540511	F070125	MTSAEDKRRWIEALHAYRDDSERLFGLVASLANLLDRTLVVETMESVLGVTAVHEGDCVIFDDFAIRFGSDDRVKSVFRTIDGTGSGG*
Ga0055518_10158589	Ga0055518_101585891	F030371	MASFGCDTPETISDIASKDEQRLVGTIAKALAANSPYLNVIKGGTFPAGVSDEIRSSVQMQAAPGDSYAVPTFVCDTDLCGQIGHQDLTDTIEYVTRLESFRGRGPNVCVKKGYAAFKGSYTMAEDSLRKNVVQYINADVRAQLTIRSASKFVANANYDFDSLFTGG
Ga0055518_10161131	Ga0055518_101611311	F074893	MMATSGLQAFADNGALTIRITGPMDLLLTSALREFCHGTGNVYRRYIVDLRDVSIVRDSGLALLLMLKRLVSRTGATLHVINGNTDLMRRCLRLGISPA*
Ga0055518_10166311	Ga0055518_101663111	F093897	MKPGFYISMGIAIAGLIVGFVLLNDIQQEKESKNIWIQKIPTQCNDVWEREHQEFYDLNPELLNSNKEKSKEILETIIKNHYEKAGISILDLNLELDVIDEIRCESCDCLGSDRVSIKIPKNQFELISQSEGWKPLE*
Ga0055518_10166591	Ga0055518_101665911	F087912	MIRPEYKKILFDQRGAAVILWSFFAISIPIYLVIARQLLGNPKLGTNPTIAEPARLIFWILTLVDLGYYVYWRRKHLTDQGIRRDARQTKLFRALEEFNGVDEQSAAYVVSTYVTRKVVIFAIIEAIAVYGFVLAF
Ga0055518_10180519	Ga0055518_101805191	F001115	MKNDLQNLTEDISRLYDDITQKTQSLGQIDSIARLYDELQTQLQGISTEEVEMLQAQIKSTLEQMVGISKSLAVIKTLKVTLNGHDDLSEQYKKIPNGKDVRRAMEDR*
Ga0055518_10188385	Ga0055518_101883851	F026412	GFLVTALALVPTLLNLLHVPDRVTWPLSSAAAASILTFVLVIQFRRRRMIELGRFPPWVTAIYGVSIVAVAGLWLNVAGFPFSPSVGPYAVALTWALCVFGFIFVRTIALFLHRAPQP*
Ga0055518_10191954	Ga0055518_101919542	F060099	MGLTDDQRDDAAKALRAAQEAIEYTVKGVKGLEEAATLRGRIDEIELYLKRAKMALKFI*
Ga0055518_10194085	Ga0055518_101940851	F002477	IMAEPATGFLFAALVPAGNPSDVSYVVPLLDKVQGAIQRVTTTPKRQVHSVAGDLGINDATLRHTLHARGILTVGIPQTVEPLDPTPSPEASRAILTAASLTGKRTVHQVQGACTAGYSRPVVESYIASLLARGAGQLRYKGLAGAGVQLGMTVLAQNGATLVRIREQRLTKRAQK
Ga0055518_10197795	Ga0055518_101977951	F048676	MSFRYSRLCETASDAVDVVKLQIPQGFKFLKFRMPEYLKNMIQLTILKI*
Ga0055518_10198185	Ga0055518_101981852	F005564	IESPKRQLVMENDMNRIFIALMIIFFVGDPGMETMAWLGDMKYYVIAAAISLCSMPFIVSQLDG*
Ga0055518_10203490	Ga0055518_102034901	F100461	MRFGKVALLITIAAATLHCSGNPPVSEPGQEALNAPSAVFIRSIDHAATPSGTQVVLHGNFPFNFTSYQPDSRTLVVELLDVKVDGLSDEIDIDTPQVEGIVVSNVNSIDGGSIAKFEFQNVLAGRHAIHIDGNDLVVDFPSLSDVDNM
Ga0055518_10208829	Ga0055518_102088291	F036770	DWLGRVRGQQGRISRQAVVSQALYSVSSYKTWADKARGAFDKDK*
Ga0055518_10211396	Ga0055518_102113961	F084255	SRRYLLQAEIEYWHEMLKLNKNRVSRDRQEEMRNCLKQALRALNSQLVPEFRAAA*
Ga0055518_10217604	Ga0055518_102176041	F074891	MSAVTHDVVLKRKPRKKRNKGEAALRSLRRALARRKLELMREDEILHEQIYDVFEEEAGKKA*
Ga0055518_10222177	Ga0055518_102221771	F008627	MMCRFLNADFELALRCPVDKCNHNVRFQAYPQLRDHALEVIACDAAGDADRLTCGKNCRALIESGHYWQSIYPESAIYSRNL*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004074: Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - White_ThreeSqA_D1

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences