Sample 3300004065

Overview

Basic Information
IMG/M Taxon OID	3300004065 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101366 \| Ga0055481
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	1094989272
Sequencing Scaffolds	70
Novel Protein Genes	73
Associated Families	62

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	2
All Organisms → cellular organisms → Bacteria	12
All Organisms → cellular organisms → Bacteria → Proteobacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1
Not Available	27
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter phosphatis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Amphritea → Amphritea atlantica	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas tolaasii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus rhodnii	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	37.926434	Long. (^o)	-122.509186	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F000388	Metagenome / Metatranscriptome	1201	Y
F000926	Metagenome / Metatranscriptome	832	Y
F004928	Metagenome / Metatranscriptome	418	Y
F005815	Metagenome / Metatranscriptome	389	Y
F007779	Metagenome / Metatranscriptome	345	Y
F008223	Metagenome / Metatranscriptome	337	Y
F008792	Metagenome / Metatranscriptome	328	Y
F009540	Metagenome / Metatranscriptome	316	Y
F015115	Metagenome / Metatranscriptome	257	Y
F016146	Metagenome / Metatranscriptome	249	Y
F016664	Metagenome / Metatranscriptome	245	Y
F016971	Metagenome / Metatranscriptome	243	Y
F018371	Metagenome / Metatranscriptome	235	Y
F020359	Metagenome / Metatranscriptome	224	Y
F020776	Metagenome	222	Y
F021078	Metagenome	220	Y
F021358	Metagenome / Metatranscriptome	219	Y
F021634	Metagenome / Metatranscriptome	218	Y
F022487	Metagenome / Metatranscriptome	214	Y
F025449	Metagenome / Metatranscriptome	201	Y
F027211	Metagenome / Metatranscriptome	195	Y
F032367	Metagenome / Metatranscriptome	180	Y
F033045	Metagenome / Metatranscriptome	178	Y
F034408	Metagenome / Metatranscriptome	175	Y
F035819	Metagenome	171	Y
F035820	Metagenome / Metatranscriptome	171	Y
F036417	Metagenome / Metatranscriptome	170	Y
F038836	Metagenome / Metatranscriptome	165	Y
F039119	Metagenome / Metatranscriptome	164	Y
F039145	Metagenome / Metatranscriptome	164	Y
F040773	Metagenome	161	Y
F042975	Metagenome	157	Y
F044746	Metagenome / Metatranscriptome	154	Y
F045770	Metagenome / Metatranscriptome	152	Y
F051294	Metagenome / Metatranscriptome	144	Y
F051775	Metagenome	143	Y
F054652	Metagenome / Metatranscriptome	139	Y
F054878	Metagenome	139	N
F058645	Metagenome / Metatranscriptome	134	Y
F061237	Metagenome / Metatranscriptome	132	Y
F070135	Metagenome	123	Y
F070301	Metagenome / Metatranscriptome	123	Y
F071270	Metagenome / Metatranscriptome	122	Y
F074891	Metagenome / Metatranscriptome	119	Y
F076549	Metagenome / Metatranscriptome	118	Y
F077315	Metagenome / Metatranscriptome	117	Y
F077325	Metagenome	117	Y
F078289	Metagenome / Metatranscriptome	116	N
F081350	Metagenome / Metatranscriptome	114	Y
F085725	Metagenome	111	Y
F088925	Metagenome / Metatranscriptome	109	Y
F089875	Metagenome	108	Y
F091556	Metagenome / Metatranscriptome	107	Y
F093892	Metagenome	106	Y
F094484	Metagenome	106	Y
F101675	Metagenome / Metatranscriptome	102	N
F101965	Metagenome	102	Y
F102140	Metagenome	102	Y
F103948	Metagenome	101	Y
F104552	Metagenome / Metatranscriptome	100	Y
F105216	Metagenome / Metatranscriptome	100	Y
F105217	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0055481_10007963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4152	Open in IMG/M
Ga0055481_10010020	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	3747	Open in IMG/M
Ga0055481_10017325	All Organisms → cellular organisms → Bacteria	2904	Open in IMG/M
Ga0055481_10019133	All Organisms → cellular organisms → Bacteria → Proteobacteria	2770	Open in IMG/M
Ga0055481_10026930	All Organisms → cellular organisms → Bacteria	2357	Open in IMG/M
Ga0055481_10031014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2207	Open in IMG/M
Ga0055481_10034902	All Organisms → cellular organisms → Bacteria → Proteobacteria	2084	Open in IMG/M
Ga0055481_10049062	Not Available	1756	Open in IMG/M
Ga0055481_10090164	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1290	Open in IMG/M
Ga0055481_10090582	All Organisms → cellular organisms → Bacteria	1287	Open in IMG/M
Ga0055481_10105675	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
Ga0055481_10107208	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
Ga0055481_10109708	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1167	Open in IMG/M
Ga0055481_10111626	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
Ga0055481_10118159	All Organisms → cellular organisms → Bacteria	1123	Open in IMG/M
Ga0055481_10120169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1113	Open in IMG/M
Ga0055481_10120447	Not Available	1111	Open in IMG/M
Ga0055481_10139641	All Organisms → cellular organisms → Bacteria → Proteobacteria	1029	Open in IMG/M
Ga0055481_10139888	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
Ga0055481_10160881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Betaproteobacteria incertae sedis → Candidatus Accumulibacter → Candidatus Accumulibacter phosphatis	955	Open in IMG/M
Ga0055481_10165133	Not Available	941	Open in IMG/M
Ga0055481_10166498	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosopumilus	937	Open in IMG/M
Ga0055481_10171593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter marginalis	923	Open in IMG/M
Ga0055481_10176404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909	Open in IMG/M
Ga0055481_10176915	Not Available	908	Open in IMG/M
Ga0055481_10179384	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
Ga0055481_10179581	Not Available	900	Open in IMG/M
Ga0055481_10209588	Not Available	829	Open in IMG/M
Ga0055481_10224315	Not Available	799	Open in IMG/M
Ga0055481_10226093	Not Available	795	Open in IMG/M
Ga0055481_10229140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Oceanospirillaceae → Amphritea → Amphritea atlantica	790	Open in IMG/M
Ga0055481_10229381	Not Available	789	Open in IMG/M
Ga0055481_10230508	Not Available	787	Open in IMG/M
Ga0055481_10233705	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
Ga0055481_10233793	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
Ga0055481_10246005	Not Available	760	Open in IMG/M
Ga0055481_10252437	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	750	Open in IMG/M
Ga0055481_10254366	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	747	Open in IMG/M
Ga0055481_10262423	Not Available	734	Open in IMG/M
Ga0055481_10266581	All Organisms → cellular organisms → Bacteria → Proteobacteria	728	Open in IMG/M
Ga0055481_10268360	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	726	Open in IMG/M
Ga0055481_10283772	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	704	Open in IMG/M
Ga0055481_10284189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	703	Open in IMG/M
Ga0055481_10295633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	688	Open in IMG/M
Ga0055481_10297741	Not Available	686	Open in IMG/M
Ga0055481_10301611	Not Available	681	Open in IMG/M
Ga0055481_10313210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas fluorescens group → Pseudomonas tolaasii	667	Open in IMG/M
Ga0055481_10322187	Not Available	656	Open in IMG/M
Ga0055481_10322830	Not Available	656	Open in IMG/M
Ga0055481_10326237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	652	Open in IMG/M
Ga0055481_10353159	All Organisms → cellular organisms → Bacteria → Acidobacteria → Holophagae → unclassified Holophagae → Holophagae bacterium	624	Open in IMG/M
Ga0055481_10354106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
Ga0055481_10364144	Not Available	613	Open in IMG/M
Ga0055481_10364146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
Ga0055481_10399428	Not Available	583	Open in IMG/M
Ga0055481_10410141	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	574	Open in IMG/M
Ga0055481_10431211	Not Available	558	Open in IMG/M
Ga0055481_10440018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	552	Open in IMG/M
Ga0055481_10447999	Not Available	546	Open in IMG/M
Ga0055481_10458367	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	539	Open in IMG/M
Ga0055481_10462694	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
Ga0055481_10478177	Not Available	526	Open in IMG/M
Ga0055481_10493345	Not Available	516	Open in IMG/M
Ga0055481_10495599	Not Available	515	Open in IMG/M
Ga0055481_10496738	Not Available	514	Open in IMG/M
Ga0055481_10510342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus rhodnii	506	Open in IMG/M
Ga0055481_10515779	Not Available	503	Open in IMG/M
Ga0055481_10516230	Not Available	502	Open in IMG/M
Ga0055481_10518054	Not Available	501	Open in IMG/M
Ga0055481_10519564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	500	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0055481_10007963	Ga0055481_100079633	F025449	MSTEHHWNHVNFAIAPERLPLVEECIDALFGWRKFVAKPYLLGYQLTDDFYAAALYFRPVEAAGALTDALERLRGDDPALDEALAALRTADGDWADHTGFMTSSLDEWERRLARAESLARERPEFGIEVVDVLRPGDGRSQTEDLYQAFVRVGLLGPWRNTFEMQARRA*
Ga0055481_10010020	Ga0055481_100100206	F105217	MESGLNTNNEKNTLIDSLQYRLFYAEINLEKIPTAIPLDIFPKDKISNEIAIDGFLFYTNAALDLIFTEVNKKLGLGLSSNQTNPSEIMNALSKKDSPENIRILEEFEKYFQKPIHEEKIISDKEFNDGLNRYGYDVIGFHAEYETRGQIKYQHFWNRASSRLWEIRNQQNLESYDSLLKNAGKRGKDEPRNYLRVKLSEDNSPSVYWDSAHYENPKRYFSNILYLVKDFIDKILEVLKPRYSENSKIE*
Ga0055481_10017325	Ga0055481_100173253	F038836	MDEQGWTVDIDAVGDPADTDERYDDQLDAFERALEPYSAAVAGSEAHDRYGARFSLDTDSVNPIDVLEQGLDVFHDAAVAVDLPAWQGGRCEILTYEEDEATDTP*
Ga0055481_10019133	Ga0055481_100191332	F081350	MRSSKARRRSIGGWGSAILVQALVIAFAAGEAQAKAAFLYGGEPVHPACVQALAMHEGDEVPVITAVTLAGCTSSRRTRSKVHYEDDFATFEDDALLGGGSFGYRELARLENGIVGLIIRRVLPDGEEKVSMAAVKLVDRPMMRHGELVHMQQIELLGELWIPGMDVLSFRSMGNVVEFVAGTGPERVERKVDFTRLGKLRK*
Ga0055481_10026930	Ga0055481_100269303	F051294	LPPGTAVAFTEFRGVARTKFHLRVRDPGAPAMAIQVTNVAGMVAQMKAAGVNLISANGELVDFGNGIHNIFVEDPNGMNLELFERTDNPREAR*
Ga0055481_10031014	Ga0055481_100310145	F018371	MDYTNIIRPKRLTNMQEMEIHVGGPDGANRLFMYSGMAEVELCGGLPHPRWSLEVVCFDIGRTYDKSKGEEVIKILTSASLAGSRTDGVASFAGWEIFGAAGELDHEDHRVRMNIAAGARDTQAFLEQICFTVNVLAKV*
Ga0055481_10034902	Ga0055481_100349021	F016664	MDQAINRVQAARESSNVVEIVVHVSENLDDQQRRDLVAALEQEDGIVSAEFCPLRYHLMLVRYDRDRISSQDVLQAVGTQKIQARLIGPI*
Ga0055481_10049062	Ga0055481_100490623	F033045	MKISELELPQHLYTEETSSPCGAVTRLIAPDKLVSWAEEGRGDAIARLCHSVYERKLASIDTWESDRILQLEYEWMAAGNDEDMSGCKYVNVKHYPTTREDVAREAELKRASVKERMIEHQTAIEDLVQEAREFISAYVAQQEE
Ga0055481_10074792	Ga0055481_100747921	F102140	IKRSWKKSQARHPFEFDCMENPRQEDFENAYYVRERYRPTCMRVEGKGMELSRMVCRRPE
Ga0055481_10090164	Ga0055481_100901643	F088925	MQERKCSKCGSINVYKNTSNNWHQDGLVLQTIAEGSFNDLFQTEAFLCLNCRNLEIQVAETSTMYGKQKKLINTIQASNNWVKA*
Ga0055481_10090582	Ga0055481_100905821	F021634	MTTTRFSARKRFGTGTWAVAGSIALLACGGHQALAQESDPSAFFLEHDAVTPPLLFREAWQQPPHTGPLNDENRRITEAALTNPDLELTLYGTDARNIQVTQHNGIPDLWNGFTTSPVALTLK
Ga0055481_10105675	Ga0055481_101056752	F051775	MSFLLGKTLQVAGMLTLGVALVVYGFGEDDMNAELAWLIVGSVVFIIGYGLERRGGRGR*
Ga0055481_10107208	Ga0055481_101072081	F051294	ELRRLTATLPPGTMVSFTEFRGVPRTRFDPRVRDPGAPALALQVENIEGMLSQMKAAGVNVLSTDGELVDFGNGVHNIFVEDPNGINLELFERQ*
Ga0055481_10109708	Ga0055481_101097081	F078289	YGFNSLVRHEDIPKMRELGVSQEVIQYFISNQTSSVSSEDVIKMKQYGLKNDDIMSAIKSDLYRPEQKSTSMKEAELIAKLKESGMSDEAVLQFIQAVKSARRVDSDGNVTKQNTNESQRTQYPTEGATFPKPDNYGYDPINGRFLLLVNPQNQ*
Ga0055481_10111626	Ga0055481_101116262	F008223	MGFFAKLFGSTPRPPSPVEEVTRILERFATATSMGVDREDLARYPARQRQVMAFHFGAIEYLAREFQLDETQLLGVFVVFLDTYFIMPITETGSISERVQGFYDKPEESEYREAGADVCRRWHALNERRAPLQLGVMLQAS*
Ga0055481_10118159	Ga0055481_101181592	F054652	MRWGRVIVGGFVAELLVFAVVFPVLQLFGDRAFRVSIPVASAVMPFLLAIWVARRVTSRFALHGGLVGAVAAIVYMGVAWGQPQPLLYQISHVLKIVGGLAGGLVASRWKPGSRDARGAPDPE*
Ga0055481_10120169	Ga0055481_101201692	F027211	EGELMVRTYWLVPVFNEASGHLDLQPFARTDQVEACRPRAMWLPIVRCRA*
Ga0055481_10120447	Ga0055481_101204471	F039145	VTTLILLSACSQQGVQAPPELSAFIEALQENGMDGYLTLRGPVNEDMEYVAEYTIAKYSSTRIISLFKCKDAEKAAANLAEALKNTKLSGQASNGTFIMAATFYPPDEKAVEKIKALFLAHEFE*
Ga0055481_10139641	Ga0055481_101396412	F018371	MDYSNIIQPKRLTNMQEMEVHVNGPDGANRLFMYSGMAEVELCGGMPHPRWSLEVVCFDIGRRYDVENEAVINILANAALAGNRTDGVASFAGWQIFGAAGELDHEDCRIRMNIAAGARDTQAFLEQIAFHINVLARIRE*
Ga0055481_10139888	Ga0055481_101398881	F021358	DTSFAQHSGWALRAQAKYQVTPRWSLEPYYVRWSVADSPVNFMTATFTVNGITANQQLGFYEPFNTTDELGVKVGFSF*
Ga0055481_10160881	Ga0055481_101608811	F104552	MVICKASTLFLSRIACSQVCALLLLFGLLVPAQAAEVLKPDTLPQAQATLERLEQQLASARATTAQELKAFKKEIAKVRSSALDCVQQAEPEIESLDSQLAILQPAPPKDTQAKTAEEPQPAEQPEAPVSSAIARQLQDLQSRKASLEGRIANCKLLLLGSNNLDSKVDDYLRSLQTRQLLTRGPDLVSVLQANLDERERWLDFTRQLAVTSTGWDAIRPIHLAGAAAVGLLGFILGRIVPRR
Ga0055481_10165133	Ga0055481_101651331	F070135	DRNGQFKLQVYADGFAPTIQVFDEFSPVNIVRMARAVECQ*
Ga0055481_10166498	Ga0055481_101664981	F077325	MSGKGNWTEKDEATIMAIIVNMINQKEMLKDLGVKSELQKSFKIENTKEYVLGLFSGIVINLFANYWVGEHEAGLRPEDLSYLYHKISQSSELITKGLFE*
Ga0055481_10171593	Ga0055481_101715931	F007779	ACVLQGDGAMFEALLEKRAANRAYHRAYQKSVDDCLAVLFCGFPDDVLPALRQRVGNAGLVRRGEAEGTDARSCAVQLAVLLVRKLIALLSEQERQDLAQAFLLGDAANPTYKGFKSMFWAVERLDVSPALVSYLNTEVAGQLRGMSQQAIFGSWVEGQIGGVMSRLRERCLEEAEFNADLWQ*
Ga0055481_10176404	Ga0055481_101764041	F020776	MLFRTRGEDVGEELLSLYQQWLGAFEKALIATGDEEKKVAALTLTKIEARIAETPAEGPHGLVVKLGLHCFLTEHADAASEQFDSAYADLVRMTGHDPAAEI
Ga0055481_10176915	Ga0055481_101769152	F000388	MKVIKVTKEYFQTEDEKVYFFEPLEKEISVEDMQKIVDANEKIIKGLKDGTNTISE*
Ga0055481_10179384	Ga0055481_101793842	F004928	MEQAIHSIESEPAHTVEIVVHISEGLDELQRGNLVSVLNSNAGIVAAEFCPLRYHLMLVRYNKDLYSSQDVLDRVKSQNVTARLIGPI*
Ga0055481_10179581	Ga0055481_101795811	F081350	MKLRELQGRRARARGWVVLLVAWAVAVGSSEARADGTFVYADEPVHPGCVHALAMNQGDRIPVTTAVSLEGCAASERSKSKVRHEGDLLVIEDDALLGGGSFGYRVLNRLDNGIFGLAIRRVLPDGEERVSLAAVQMVPRAMIQNGTILNLMQLELLGELWVPDMQLTSFRSVGNSVHFVSGVGPDRVERNVDLTRLGRQRK*
Ga0055481_10209588	Ga0055481_102095881	F071270	MADAYSIAKKHLDAGIAEAAENNISINAYGQALIWKLLEFYRENGRSVSDIVSEVQYTLDNIDDDGTFHVSRN*
Ga0055481_10213064	Ga0055481_102130641	F103948	PARDAAPYLELELADLPPITKPRAEPKRLSTGQAPLEIARVGSGWLISCTGCGETSAPVQFRWQVLDQTVACRCE*
Ga0055481_10224315	Ga0055481_102243151	F076549	MRLLARLFAKVTYACTVCDAVQRIPLRRVHVFERFHGLRHGEPVLIHCPRCRQGVQCPSPYRSHTGHSITIDPHDPPENAFVHALY*
Ga0055481_10226093	Ga0055481_102260932	F034408	VPVTVDIPIQFSSSTVNAPPVEQSFENNLSQDTLIEKVSYGLFQQNSFPGSPFQPLYFAQLKQSGLVGVGVQLTVFGGPKYVVSDTFTDLGNLVDVFAMAWPNGWPLYKQSNVKVSAILTQTPVSVPFNVTLTFLGWQFLDKTIDDISDDDARARLRKLGFSVPDLSVLTHG*
Ga0055481_10229140	Ga0055481_102291401	F077315	MVICKASTLFLSRFACCQVWVLLPLLGLLIPAQAAEAVKPDALPQAQATLERLEKQFATAQKATAQELKTLKKEIATVRSSAQDCVQRAEPKIEILDSELTIFQPEKPKDTQKKTGEETQPAEQPEAPFSPAIARQLQDLQSRKASLEGRMAICKLMLLRSNDLESDVDAYLSSLQT
Ga0055481_10229381	Ga0055481_102293811	F091556	MDLFSLFIGFHPDDVFGRAISVDASELVIVFGTIAISMVIMVWFGNWWSR*
Ga0055481_10230508	Ga0055481_102305082	F093892	MIFLSKYQDNQLAEPVKIKTSPFRNLDRTCFLIDEVFTREKSIERKTYFCKPVV*
Ga0055481_10233705	Ga0055481_102337052	F077315	MVICKANTLFLSCIACSQVWALLLLLGLLVPAQAAEVLKPDTLPQAQATLERLEQQLATARTATAQELKAIKKEIATVRSIAQDCVQQAEPEIASLDSQLAILQPEPPKDTQAKTAEET
Ga0055481_10233793	Ga0055481_102337931	F039119	MFDSLLPASAEWQSRQLVVTPELLGLRSVGDCQQRALALGLTPLPRLPYRQEYWRLDILLQWSRNNGLDQLPKLGHGTHQHDR*
Ga0055481_10246005	Ga0055481_102460051	F033045	TRLIAPDKLISWAEEGGGDAIARLCHTVYEKRLAGIDAWERDRILQLEEEWMAAGNDDNVSGSKYVNVKHYHTTREDVVREAELKRASVKKRLIEHQTSIEDLVQEAREFMSAYVAQQDEGDMLPYLLGIVVLIAAGYALFN*
Ga0055481_10252437	Ga0055481_102524371	F000926	MARFQAGEPTGAAVAELETLVRTAIFKPANAVVGYLLQGAADRIDAAYQAKPGQVRKARVPIQVQCLFGTFELHRDYYYHSGKNQGHYPADAALGLEVGYTPG
Ga0055481_10252437	Ga0055481_102524372	F008792	MKPTSSTQLFEQIAQIKRMERGKLTVMREGPEGPYYKLQAWEKGKNVSRYVSRDQAQAVQQALEGYHKFQKLTDQYAQAVIDQTRAELAAGSKKKIYNLLRKSSWPKTRKSGK*
Ga0055481_10254366	Ga0055481_102543661	F021078	MEPKRDEVGIRLDDGLQERVAAYAGREGLTAGEAISALLYLGLEFAERQRTGLREDVEDLQRELRDLRQMVDVLGPAALGTQRILTHWAAQTGGLRVSEDELLAEGRMVAEEEWQGQLAERGLFSPGALAGKLEG*
Ga0055481_10262423	Ga0055481_102624231	F016971	MDKVVQLVSNKARNVVEIVVYVKKYLEEEQQNHVVCVLGKMDGIIETEFCPLRKHLVIAKYNKNIFSSQDVLKAFNSLNLEARLVGPI*
Ga0055481_10266581	Ga0055481_102665811	F085725	MNPLFILICLFITVVAIGLYLVFLGLHKHKRSPGLGLTHAGLALAGVVVLLLQIYTGPTDKLNNAAALFLLFAILGGGMVFALRQDNKPPPMVAVTIH
Ga0055481_10268360	Ga0055481_102683602	F008792	ERGKLTVMSQGPEGPHYKLQAWEKGKNVSRHVSRDQADAVQDALEGYHQFQHLTEQYAQGVIDQTRAELATHSKKKIYNLRRKSSWPKTRKSGK*
Ga0055481_10283772	Ga0055481_102837721	F101965	KGYDVYGGYLQGMLGANPRHEPQIGPDRPQSAQDRFLYEDGKLVYKAGMVFTLQMHIIDKQETRGLFLADTFAIRESGPQCLNKYPPQIVRV*
Ga0055481_10284189	Ga0055481_102841891	F004928	MEQAIHVINNEPDHTVEIVVHITETLGEKQREELVVALENNGGITTAEFCPLRYHLMLVRYDRGLYSSQDVLDRVKSQNVSARLIGPV
Ga0055481_10295633	Ga0055481_102956332	F016664	MVHALHSIGNEPANTVEIVVHVSENLGETRRRNLVAALENEDSIVSAEFCPLRYHLMLVRYSRDTASSQDVLASVKAHNYNARLIGPV
Ga0055481_10297741	Ga0055481_102977412	F076549	MRLLARLFAKVTHSCNVCGAVQRIPLRRVHVFERFHGLDHGEPVLIHCPRCRKGIQCPSPYRSHTGHPITIDPHDPSENAFVHAHY*
Ga0055481_10301611	Ga0055481_103016111	F045770	MADLTTDAYVKEYGTVSKEKWILDTSAAQTIYKGQPMILDISEDTVYVRGFVDATTVAADDIFIGFAAEGASVAIGAAETTEIEIYVWPTILGIPGSTFTDADVGDTMYMSDSKTLSATAADNPQVGKLHRVKDGFQYVQVISPQICTGA*
Ga0055481_10313210	Ga0055481_103132101	F061237	VPRRDTRRGKIVSMDTPEQHPPVEDGSTEEGPLVDRRAVARGALFGLCVLIAASVVEAILDRNVDNFNDTGWIYPLFVAILFGYGLGGWQAGRAAPEGGLTNGTLAGLGAFGLWIPVRIVIWLVRDEHKGLFTGHSPALRPGQLFGQIVIAAGLGMLGGFVGSRAAARARGTTP*
Ga0055481_10322187	Ga0055481_103221871	F105216	MPTLRSLTLCCFAILAAACSDKAPEPWKAAEMNRLSEQFGHIAEAYAVVDTCIPMIDADKDAKRRVISKIGVRHYSKLSQLNTEAELAKFIAYNRESGGTDEQAATLERIYRESHRAATQLLTSVDNC
Ga0055481_10322830	Ga0055481_103228301	F040773	*NGGDTLRDMYIGLGVFAVLAAVCVFAGAVAMKRRREYGDSEGEGEMGEAEFRKYEGFDE
Ga0055481_10326237	Ga0055481_103262371	F070301	MTVYVFTVEDPLGREVRLTENCYKFHILLEHPELSDVHQIAEAIESPARIAQDALASQRLVYYRTYQAQPQRWLKVVVEQGEVVTAYRVRRLKKGETIQWRQ*
Ga0055481_10353159	Ga0055481_103531592	F035820	RDELLAKLQSLTNFRAVRDPEAPNGWSIELDTFPGWKDVATW*
Ga0055481_10354106	Ga0055481_103541061	F022487	MPIRRSPNGAHHPRPQPGRDRPEQVVAINRNDRSQSIGTGGRNHPV
Ga0055481_10364144	Ga0055481_103641441	F074891	MSTVTHDVVLKPRARKKRNKGVAALRMLRRALARRKLEQMRDEELLREQIY
Ga0055481_10364146	Ga0055481_103641461	F015115	MRAELARVLPAAAIGLFLVAPAVGAQEGPPTRIADIRQETTDLSTRLVVECDGPMAYTYYSPDPLTLVVDIPEVDASSLPSRVEVGTREVESLRVTQMARADGRS
Ga0055481_10399428	Ga0055481_103994282	F009540	VSAVCGLPIPHCARGFLLEAEAGSGGGKLSLGLGARARVDDEEFRGTAAIGLRASLARTWGSPFGTEPGLTYLGPELDLSLLHVDLSLGVLWRVSGETGSSALFSWRVGLGL*
Ga0055481_10410141	Ga0055481_104101411	F036417	PLRRCIPTVIVRLATPDGEVAFRARWRSTPLELQRMILFRLRRGRPLWFEDEFGHDLCFRADAIHGAVVDGRTRLAGVK*
Ga0055481_10431211	Ga0055481_104312112	F032367	MSRKRDIKQFRQACKEAGLTVRERYEASEALHAEKRSGNVQRGMSYEELLAWLRQWRS*
Ga0055481_10440018	Ga0055481_104400181	F005815	MTMKVTRLTTYWTLDEAATAIDFLDRLRDALWETYGEQITTMHREAYDNRNQHIDQCEQGFDDDIPF*
Ga0055481_10447999	Ga0055481_104479991	F058645	RRNYRYYRNRLVPEEVFDDLLHQGLRAGVSYSSPRGLGASAGFGMSLKEPDPRHPELDIANAYSLNAGVRHADVFSSGFSVGLDAAGFSNGYTNGGLVTARVGRRLRGGHLLDLSLGRSFYHVKQTGLDRATQWLRLLGRAELGHRVYLQGDLEYDSGDDLKGPRAFLELGYLF*
Ga0055481_10458367	Ga0055481_104583671	F020359	MAAHKKSGKKSPEEFWSKVLAAPKVKRILEKRGFDPEAFRRDYEADTSRGPRSPKRPSKQEMDAVEAFQSSGDFEAFKTSLGTESAAVANSALRRVLQFKALGGVKTVRRRSGLVD*
Ga0055481_10462694	Ga0055481_104626941	F042975	GDAEKVRIVLEDRGFGRVSRDEIVRLARERGALDEARVLAEQYAAAARGDLMVFEPSSYRDALEALPGFILARDH*
Ga0055481_10478177	Ga0055481_104781771	F077315	IPAQAAEAVKPDALPQAQAILERLEKQFATARTATAQELKTLRKEIATVRSSAQDCLQQAEPKIEILDSELAILQPAKPKVTQAKTAQETQPAEQPEAPVSPAIARQMQDLLSSKTSLEGRIAICKLLLLKSNYLESNVGDYLRSLQTRQLLARGPTLVSVLQANLDERKRWLDF
Ga0055481_10493345	Ga0055481_104933451	F044746	IKGAMPKVQLVTDTDTTIQQARDEATAGTKPNPYEGLLSGTGLTASERWANKSPLLKQCVNIYEKASGTKVPGPDEEKVDSSGKKVQTDVAVVDFCGELFMFRDIAKKVGPKLTVKNWQKTVDKLGPIALVPDKYASLCKGKYAAEDSFRLVAYDSSIGASGDWKTLTPIK
Ga0055481_10495599	Ga0055481_104955991	F054878	MTDLLKKFSAAAETVKSNNRPVRACVYGAYREHLADINPDDLPDNIQIIYESVKDRLTSVQPKGDIGEDEAGYLAKDILHMADVVRTIYK
Ga0055481_10496738	Ga0055481_104967381	F081350	VTTAVSIEGCNSSDRSKSDVRFEDDFYVFEDDAVLGGGSFGYRELTQLDNGIIGLVIRRIEPNGSERVSLAAVTTATRPMIRHGRIVQLEQIELLGELWIPDMHAMSFRSVGNVVRFSAGTGPEKVEREVDLTRIGRMRK*
Ga0055481_10510342	Ga0055481_105103421	F035819	VKGHQRASEPRPRAPRHAARSVPPEAGNGAEAGRLCLVGVKVDTALRREIDAYAEAHGVSRSRAAGHYLEVGRETLREREGVPGGRADELLEAVDGLRAAVDLLGPPAFGMLRLLAHWAAHGGAVKVTEDELLAELRAVGADEWEQAVADAERDLQEPSL
Ga0055481_10515779	Ga0055481_105157791	F089875	MFPIWLILGTVMVLLGIFNKQFLRLLGLKPMSEVLTVANLKRSSRAIEQIGRWLVITLGLSFFVQGLGGTLPNEVSNKIFYSLLGLAGAMFLVIIGITIANWKAK*
Ga0055481_10516230	Ga0055481_105162301	F101675	MPRYYFHVVSPGNSVRDTHGVELAGLDAAHWHAMHLIYRLRAHSLDAVEDWVIEIGDESGAVPLVVLPSSVPKPPP
Ga0055481_10518054	Ga0055481_105180541	F016146	ALVLTDRPDEYTGKKGIVKQQIISVIDQEASQNRLAQPLEYALSEDEKPKYAGKLQDKMIKLGIHEIIPFGGRLRVRGQIVEVDGLK*
Ga0055481_10519564	Ga0055481_105195641	F094484	MKRLALAFLLSGLTVVAANTAQAEGRRMIVFALYGAAGTTGSTATTTVIDFTTQVACREARDELRRNAKAPGFGLFATCVEP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004065: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWC_D2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences