Sample 3300004055

Overview

Basic Information
IMG/M Taxon OID	3300004055 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111376 \| Gp0101365 \| Ga0055480
Sample Name	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	984055726
Sequencing Scaffolds	62
Novel Protein Genes	67
Associated Families	59

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3
All Organisms → cellular organisms → Bacteria → Proteobacteria	9
All Organisms → cellular organisms → Bacteria	7
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2
Not Available	20
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1
All Organisms → cellular organisms → Bacteria → Acidobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas thermotolerans	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas → Pseudoxanthomonas sp. J31	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Balneatrichaceae → Balneatrix → Balneatrix alpica	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration
Type	Environmental
Taxonomy	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands → Natural And Restored Wetland Microbial Communities From The San Francisco Bay, California, Usa, That Impact Long-Term Carbon Sequestration

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	Unclassified
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Location Information
Location	USA: San Francisco Bay, California
Coordinates	Lat. (^o)	37.926434	Long. (^o)	-122.509186	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F004928	Metagenome / Metatranscriptome	418	Y
F005564	Metagenome / Metatranscriptome	396	Y
F005789	Metagenome / Metatranscriptome	390	Y
F005815	Metagenome / Metatranscriptome	389	Y
F008223	Metagenome / Metatranscriptome	337	Y
F008521	Metagenome / Metatranscriptome	332	Y
F008792	Metagenome / Metatranscriptome	328	Y
F009854	Metagenome / Metatranscriptome	312	Y
F010709	Metagenome / Metatranscriptome	300	Y
F012606	Metagenome / Metatranscriptome	279	Y
F016304	Metagenome / Metatranscriptome	248	Y
F016664	Metagenome / Metatranscriptome	245	Y
F018530	Metagenome / Metatranscriptome	234	Y
F020359	Metagenome / Metatranscriptome	224	Y
F021102	Metagenome / Metatranscriptome	220	Y
F025785	Metagenome / Metatranscriptome	200	Y
F029294	Metagenome	189	Y
F029446	Metagenome / Metatranscriptome	188	Y
F031074	Metagenome	183	Y
F032367	Metagenome / Metatranscriptome	180	Y
F033045	Metagenome / Metatranscriptome	178	Y
F041201	Metagenome / Metatranscriptome	160	Y
F041403	Metagenome / Metatranscriptome	160	Y
F043301	Metagenome	156	Y
F046383	Metagenome / Metatranscriptome	151	Y
F047517	Metagenome	149	Y
F053305	Metagenome / Metatranscriptome	141	Y
F054877	Metagenome / Metatranscriptome	139	Y
F055037	Metagenome / Metatranscriptome	139	Y
F055469	Metagenome / Metatranscriptome	138	Y
F057346	Metagenome / Metatranscriptome	136	Y
F065951	Metagenome	127	Y
F066178	Metagenome / Metatranscriptome	127	Y
F068850	Metagenome / Metatranscriptome	124	Y
F070135	Metagenome	123	Y
F071270	Metagenome / Metatranscriptome	122	Y
F074893	Metagenome / Metatranscriptome	119	Y
F074897	Metagenome / Metatranscriptome	119	Y
F076639	Metagenome	118	Y
F077315	Metagenome / Metatranscriptome	117	Y
F081350	Metagenome / Metatranscriptome	114	Y
F082711	Metagenome / Metatranscriptome	113	N
F082775	Metagenome / Metatranscriptome	113	Y
F085674	Metagenome / Metatranscriptome	111	Y
F085823	Metagenome / Metatranscriptome	111	Y
F088380	Metagenome / Metatranscriptome	109	Y
F090207	Metagenome / Metatranscriptome	108	Y
F090405	Metagenome / Metatranscriptome	108	Y
F090930	Metagenome / Metatranscriptome	108	Y
F092074	Metagenome	107	Y
F092940	Metagenome / Metatranscriptome	107	Y
F093437	Metagenome / Metatranscriptome	106	Y
F094484	Metagenome	106	Y
F097964	Metagenome / Metatranscriptome	104	Y
F098275	Metagenome / Metatranscriptome	104	Y
F101187	Metagenome / Metatranscriptome	102	Y
F105195	Metagenome	100	Y
F105216	Metagenome / Metatranscriptome	100	Y
F105747	Metagenome / Metatranscriptome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0055480_10002350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7571	Open in IMG/M
Ga0055480_10006310	All Organisms → cellular organisms → Bacteria → Proteobacteria	4650	Open in IMG/M
Ga0055480_10009657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3778	Open in IMG/M
Ga0055480_10022349	All Organisms → cellular organisms → Bacteria	2468	Open in IMG/M
Ga0055480_10026285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2271	Open in IMG/M
Ga0055480_10027800	All Organisms → cellular organisms → Bacteria → Proteobacteria	2205	Open in IMG/M
Ga0055480_10029787	Not Available	2128	Open in IMG/M
Ga0055480_10037843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium ADurb.BinA094	1885	Open in IMG/M
Ga0055480_10045446	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	1720	Open in IMG/M
Ga0055480_10046851	All Organisms → cellular organisms → Bacteria → Proteobacteria	1694	Open in IMG/M
Ga0055480_10050262	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1635	Open in IMG/M
Ga0055480_10055871	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
Ga0055480_10067674	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M
Ga0055480_10075284	All Organisms → cellular organisms → Bacteria → Proteobacteria	1331	Open in IMG/M
Ga0055480_10080561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1286	Open in IMG/M
Ga0055480_10092856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1198	Open in IMG/M
Ga0055480_10104800	All Organisms → cellular organisms → Bacteria → Proteobacteria	1126	Open in IMG/M
Ga0055480_10106317	All Organisms → cellular organisms → Bacteria → Proteobacteria	1118	Open in IMG/M
Ga0055480_10121780	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium	1043	Open in IMG/M
Ga0055480_10122374	Not Available	1040	Open in IMG/M
Ga0055480_10126492	Not Available	1022	Open in IMG/M
Ga0055480_10130438	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
Ga0055480_10133292	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → environmental samples → uncultured Woeseiaceae bacterium	996	Open in IMG/M
Ga0055480_10141939	Not Available	964	Open in IMG/M
Ga0055480_10153293	Not Available	928	Open in IMG/M
Ga0055480_10169812	Not Available	880	Open in IMG/M
Ga0055480_10172185	Not Available	874	Open in IMG/M
Ga0055480_10177396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	860	Open in IMG/M
Ga0055480_10178371	Not Available	858	Open in IMG/M
Ga0055480_10210267	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
Ga0055480_10214248	All Organisms → cellular organisms → Bacteria	778	Open in IMG/M
Ga0055480_10217134	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
Ga0055480_10222620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	763	Open in IMG/M
Ga0055480_10234308	All Organisms → cellular organisms → Bacteria → Proteobacteria	742	Open in IMG/M
Ga0055480_10238392	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
Ga0055480_10239544	Not Available	734	Open in IMG/M
Ga0055480_10254295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	711	Open in IMG/M
Ga0055480_10275772	Not Available	680	Open in IMG/M
Ga0055480_10288812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	663	Open in IMG/M
Ga0055480_10293139	All Organisms → cellular organisms → Bacteria → Acidobacteria	658	Open in IMG/M
Ga0055480_10299785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	650	Open in IMG/M
Ga0055480_10301327	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
Ga0055480_10301381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas thermotolerans	648	Open in IMG/M
Ga0055480_10302489	Not Available	647	Open in IMG/M
Ga0055480_10306910	Not Available	642	Open in IMG/M
Ga0055480_10316220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter → Methyloceanibacter methanicus	631	Open in IMG/M
Ga0055480_10320894	Not Available	626	Open in IMG/M
Ga0055480_10335459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	612	Open in IMG/M
Ga0055480_10339568	Not Available	608	Open in IMG/M
Ga0055480_10342363	All Organisms → cellular organisms → Bacteria → Proteobacteria	605	Open in IMG/M
Ga0055480_10344649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	603	Open in IMG/M
Ga0055480_10349933	Not Available	598	Open in IMG/M
Ga0055480_10355962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
Ga0055480_10362664	Not Available	586	Open in IMG/M
Ga0055480_10374188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Xanthomonadaceae → Pseudoxanthomonas → unclassified Pseudoxanthomonas → Pseudoxanthomonas sp. J31	576	Open in IMG/M
Ga0055480_10394832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Balneatrichaceae → Balneatrix → Balneatrix alpica	559	Open in IMG/M
Ga0055480_10395848	Not Available	558	Open in IMG/M
Ga0055480_10403545	All Organisms → cellular organisms → Bacteria → Acidobacteria	552	Open in IMG/M
Ga0055480_10404929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	551	Open in IMG/M
Ga0055480_10449306	Not Available	519	Open in IMG/M
Ga0055480_10470868	Not Available	505	Open in IMG/M
Ga0055480_10476024	Not Available	502	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0055480_10002350	Ga0055480_100023505	F074893	MISSRLEASADNGALTIRINGPMDLLLTSALREFCHDTGTAYRRYIVDFQDVSIVRDSGLALLLMLKRGLSHTGATLHVTNGTRDLMLRCLKLGIKPA*
Ga0055480_10006310	Ga0055480_100063101	F105747	VAIKGSAVRAEGNQSLRTLCASCGTSIPTEVGHAHPLDESVRRETWGLLGR
Ga0055480_10009657	Ga0055480_100096572	F005815	MTMKVTHLTTYWSIDEAATAIDFLDRLQDALWETYGEQITEMHREACDSRIQDINQCELGFDDDIPF*
Ga0055480_10022349	Ga0055480_100223491	F020359	EFWSKVLAAPKVKRILEKRGFDAEAFRRDYEADTSRGPRAPKRPSKQEMDAVEAFQRTGDFDALKESLGTRSTAVANTALRRVLQFKALGGVKTVRRRSGAVE*
Ga0055480_10026285	Ga0055480_100262852	F016304	VLVGFLLAADAFVVAALAIARPAGWLPPFVAFGLILLGLIWFQAWALRHRDDDG*
Ga0055480_10027800	Ga0055480_100278001	F029294	MSQETGETRDAIIEEDNKQIQDIVDANKNLREPYWIVVFAKPSKNCVDGKPTLIKHIKAYKTEPSSQVGMIAGKVDNAKGTIDWEINMPQRPFNFDALPGL
Ga0055480_10029787	Ga0055480_100297872	F005564	MHKLIIGLMVVFFLGDPSFQTLVRLGEMKTYMVAAAIALVSTPFVVSQIDG*
Ga0055480_10037843	Ga0055480_100378431	F081350	MSQLESEMRSGSSRREWPWLHACAIAVFAVASAGIAHADEDFSYGGEPIHPACIHALTMHQGDRAPVTTAVSLEGCASSARSKPKVHYEPGDLAVIEDDELLGGGTFGYRVINQLDNGIFGLIVRRVLPDGQERVSLAAVEIVVRPMIRQGKIVRVRQIELLGELWLPGMELTSFRSMGNRVHFAAGTGPNRIERDVDFTRLGNLRH*
Ga0055480_10045446	Ga0055480_100454461	F020359	EEFWSKVLAAPKVKRILEKRGFDPEAFRRDYEADSSRGPRTPRRPSKQQMDAVEAFQRTGDFEALKTSLGTESAAVANSALRRVVQFKALGGVKTVRRRAGSD*
Ga0055480_10046851	Ga0055480_100468511	F071270	ADAYSIAKKHLDAGIAEAAENNISINAYGQALIWKLLEFYRENGRSVSDIVSEVQYTLDNIDDDGTFHVSRN*
Ga0055480_10050262	Ga0055480_100502621	F008792	MERGKLTVMREGPEGPYYKLQAWEKGKNVSRYVSRDQAQAVQQALEGYHKFQKLTDQYAQAVIDQTRAELAAGSKKKIYNLLRKSSWPKTRKSGK*
Ga0055480_10055871	Ga0055480_100558712	F025785	VRPRRGRGKKSRKRPVAWGRWTLYSLGRVLQVTGLLITLVAATAFFGTSSTTAMLRMMLVGVLFFVPGWLLARRDPGA*
Ga0055480_10067674	Ga0055480_100676744	F005789	AAVRAGREEREQDAFTLTSSAIIRRMRGPIVDARIAYPEVLHVEIKDAAGELWQLATQDADWSPSDPAELVGHSVTDAGIDAETGELRCKLSDGSVLHVKPAEREAEDDPPNWELITPGGVVLEFGPGVRWQIGSADSRASWG*
Ga0055480_10075284	Ga0055480_100752842	F068850	MQAKRCTCPLFVAALLWALNASGQEQLEQETISIKGNQGLPKTLYIAPWKRVGTPLDSDELEGDIREDTEPVERDIFQHELELQRQGYSVD*
Ga0055480_10080561	Ga0055480_100805612	F032367	LARKRDTKQFRRACKDLAFTDEERYAARDALHAEKQAGRPRAHMSYGDLLAWLRQWKQANGD*
Ga0055480_10092856	Ga0055480_100928563	F098275	MAAQPKKRPLMAPGNEAEWTRINEEKREALTPPPGTPIGVLLRRGQHLSAQGAKLLRAVERADGDSRP*
Ga0055480_10104800	Ga0055480_101048002	F008223	MGLFGKLFSGNRRADDEIDTINGILQRFTTATLMGVDAEDIGRYPPKQYKVMAFHYGAIEYLASLYGLDENRMLGVFVSFINRNFNLPVTETGSITERLAGFHGDPEQRRYLEAGRAVFRRWHEENDRRAPLELGVMLKSA*
Ga0055480_10106317	Ga0055480_101063173	F008223	MNILEKLFHKRRPPYTPVAAATRVLERFATATSMGIDREDLGRYPAKQRKVMAFHFGAIECLAEAFALDETEMLAVFVVFLDRYFSLPVTETGSISERLQGFRDNPDECRYLEAGRDVFRRWHEHDERRAPLVLGEMLRTN*
Ga0055480_10121780	Ga0055480_101217802	F009854	MSEIETRAELFAALQELSEIVPDMRAGQLMAAVGEVCGDLHGRGLWDASDEELLEAVWQFRRNYESATVGQVTPGV*
Ga0055480_10122374	Ga0055480_101223742	F081350	ALAMHEGDEVPVITAVTLAGCTSSRRTRSKVHYEDDFATFEDDALLGGGSFGYRELARLENGIVGLIIRRVLPDGEEKVSMAAVKLVDRPMMRHGELVHMQQIELLGELWIPGMDVLSFRSMGNVVEFVAGTGPERVERKVDFTRLGKLRK*
Ga0055480_10126492	Ga0055480_101264922	F018530	TMQAFVQVVRDYTRDHSELNRLIAGQESNDRLVAWAVLDALSIFNGTPHLTNLSLEDLLARNQHALMLRLTVITLLESVGLLQTRNHLNYSNGGLNVGVNDKTPLILQWLQYYQASTNQMMARVKAALNIEGILGPSNSGVHSELWAVNSSYLAY*
Ga0055480_10130438	Ga0055480_101304381	F082775	MSEPDILYPAIFVFSMLLTGLLLTMWEFSRLQKRQQQKADRDEPVSDPGFRASRGNVRKVSHF*
Ga0055480_10133292	Ga0055480_101332921	F029446	MLLILVLMTGIVVGTLPGLFKLDKMFSITNIAVGIIGALAGALSGFGDLPLFLEYSFLNEITLMVAVSFLLVLIKVLIARKRIAP*
Ga0055480_10141939	Ga0055480_101419391	F008223	MRLFNRLFGKRPKPPSPGEQLAAVLHRFTTATIVGVDREDLGRYPAKQRKVMAFHYGAIRCLAREFELDETATLAVFVMFVDKYFNLPVSETGSISERLQGFQENPEERRYLLAGEDVFRRWHEQGDRRAPLELGEMLQA*
Ga0055480_10153293	Ga0055480_101532931	F054877	MKPHKNLRVLARFSPKTTDDLEPKLSKLVGTEAVFSYHRFVEENDTPYSEQWVLTTEDQRFGDYWIPECDLDILREKHSA*
Ga0055480_10169812	Ga0055480_101698121	F088380	MKIVFIVAAMFSILALASIVAQERGLSQIENSTVSVTTKAPDLLAMGPDPGGHTGATVTPETTKTGQPAVDRAREAASGSRTENSGPRINGAEESRK*
Ga0055480_10172185	Ga0055480_101721851	F012606	MTNLSNREITLTLTSTHLHKMVQDNLLKEDEISDDAKVATVVQKLLDDALGLPKEPWHAWDDWAKGLE*
Ga0055480_10177396	Ga0055480_101773961	F055037	GPVPDRITIWPMDDGRYGLDATFQGASGYERVERHAEGLKRDRVRHSLRQELDGGWTLRFGPLSAAEVGGALGAFVC*
Ga0055480_10178371	Ga0055480_101783711	F033045	MKTSELELPQHLYTEETSPCGAMTKLIVPDKLVSWAEEGRGDAIASLCYTVYERKLASISVWESDRILQLEDEWMVAGNDEDISGRKYVNVKHYHTTREDVVREAELKRARVKEQMTEHQTAIEELVQEARVIISNYVAQQDEGDMLPYLFGIVVIAAAGYALFS*YQQAENEPHF
Ga0055480_10186848	Ga0055480_101868482	F097964	HPLGARLIVPEVGILGRLVQFGEAPLRGFDVKDASSAVRATA*
Ga0055480_10198974	Ga0055480_101989741	F085674	MPGEAFLLNVSLIAVAVAGFSGVTATLTPPGGSWHPAMRIRHRAIMSTSFNVMFESLAPLIAFAMLDDARSAFVAASAVVAVYATGIVIWRGRQLLRAGGPRTRTLAVLFALGPTA
Ga0055480_10205224	Ga0055480_102052241	F101187	MTLIRSMNIDPDIVSKTQCELDYACISGKAVCNVELYEYRDVQLLRCRDERACAYRKNYQGLSICTCPVNRASA
Ga0055480_10210267	Ga0055480_102102671	F053305	MLKKPLSIVLVALFVFSFISVAALSAAEVKGKLVSANAETGEVVVQDDAGETKTLMADPKVVDLKMLKEGDMISVESDDSGAVQSIKISE*
Ga0055480_10214248	Ga0055480_102142482	F008223	KIIDRFATASTVGVDREDLARYPARQYMVMAFHYGAIDYLSQQHELDETQTLGLFVVFLNSYFSMPITETGSISERLQGFREKPDEHHFMEAGADAFRRWHEHDERRAPLELGELLKEA*
Ga0055480_10217134	Ga0055480_102171342	F082711	MKTTELEIKLDGRTFLGRVPSSVSKKRPELGPLIHIDDLGVFEGKVAQRIFAEKLRGPQSFRLCRSVCAMSMQAVADLLQVDRRTVQRWESKESPVPPWAMLLVTKMADERSKGRAVMRTWLTELADEEGRPTEIDLDVA*
Ga0055480_10222620	Ga0055480_102226202	F057346	MEAQGKRVGNWTPDGEVERARLRRDYLELAPAQRMKQVCDLSRFMSRVAEAGRRHRGA*
Ga0055480_10234308	Ga0055480_102343082	F016664	LKEARNAVEIVVHISESLEEGQRKNLVSALEKEDGIVSAEFCPLRYHLMLVRYDRNQYSSQDVLNAVDAQHLEARLIGPI*
Ga0055480_10238392	Ga0055480_102383921	F105216	YTPSKNYVKTSGIEMRMPRFPTLCCLAILAAACSDEAPEPWSAREMNELSEQFGHIAEAYAVVDVCIPMINADKEAKRRVISKIEVRHYSKLSQMNTEAELAKFLTHHRQSGGTDEQAAALDRIYRESHQAAAQLLTSLDSCVETVVDYANTILNTKVSTTP*
Ga0055480_10239544	Ga0055480_102395442	F070135	SGNYNLHIPLDSNGQYKLQVYADGFAPYIVQKDMTQLTNTIRLAKASECS*
Ga0055480_10254295	Ga0055480_102542952	F004928	MAQALHSIENEPDHTVEIIVHITESLGEQQRGDLIAALEGNGGITAAEFCPLRYHLLLVRYDRDLYSSKDVLERVTSQKVSGRLIGPV*
Ga0055480_10262348	Ga0055480_102623481	F021102	VTRHRESPIKRRNPSGKVVWLARYTGRDGKRRMAKPAWNRGKGTFERKADAQQAIDEAYGLADRPDTLGEYAETWTERHPRSERTNATNDHRIGRVLDVEIEGIALGDWPLRELRRRHTLALVDHMLRNEGRATTGVVNIVRALSAMAEDAITDEVCDLNPFKGVRIRAGPSRVSRRPVYVASVSC
Ga0055480_10275772	Ga0055480_102757721	F085823	LTADTDERTPVMPEPTPEHPEDAGIAEEIPELTAIEGARLLGNDARSRLRADGFDDAQIDEWAETFIAEEGSGTVEQFVAWIVRMEQSG*
Ga0055480_10288812	Ga0055480_102888121	F031074	MASAIRKLDIVVGEIVEIDGRRYEVVPDRMGGVTIEPPITPVAELEKRWGTMPASDEDFERLTAADPSDGEG*
Ga0055480_10293139	Ga0055480_102931391	F090207	MWQPTRFQWWLLLAVALFIVVAWPPRDDKSLAVKLVNWAVDPWDTLPVLPGPLPMRFGDDPNAVLVHDLETQRYDQLYRRGGWTRV
Ga0055480_10299785	Ga0055480_102997851	F092074	MHRTTTLFYVTCMLLVASLPASADETATLLCNFKHGQIEIVVNYTKETANGVTAIISDKEILWSPGGNKKGMAVINRYTGIMQLSKGPKEFYGNCNKKPE*
Ga0055480_10301327	Ga0055480_103013271	F093437	MAVALLTLALVGTLALAATAFLGYRIPADPAWVRQHFLMALGTTTLLVMAHSFIMFFLIATGVELKNMEKERGWGDSFRRQTVAMKGRVFPLMTLAIALVMANFILGAATHTRVLPPWFHEGL
Ga0055480_10301381	Ga0055480_103013811	F074893	MVSSQLNAVAGDGSLTISINGPMDLLLTRALREHCQDNGATYHRYIVDFRNVSIVRDSGLALLLMLKRWANRAGATLCVINGNRDLMRRCFSLGIGP
Ga0055480_10302489	Ga0055480_103024892	F041201	AEFKTGGILLYVEDFKRGTNKDIGPKDIFEMGSKYPDLRY*
Ga0055480_10306910	Ga0055480_103069101	F105195	MTVLLIWSLVDTQSPRIITSDKRVIDLLETDPAIWASYISEENKRRVLAAVQRWETAVTAGADATEAYGYAIGGFDIDFQTWLINEGESPYG*
Ga0055480_10316220	Ga0055480_103162201	F008521	MNTKHQKLTLRSEKNESASLLIWIISGLYLLAMVWLLLTKMGGYGEHDTQPWLVPAVVALSVCYGILMSLLWSNESV
Ga0055480_10320894	Ga0055480_103208942	F066178	VKGQEVGRWTCSRCGQSIVAAGPRASSYRGFGAFIGPCPWDCGAWINRSFREIRPGNVRAYRAAEWDVREHSALS*
Ga0055480_10335459	Ga0055480_103354592	F074897	EQLSGEALISPHVLSDELQEYVEELDSHSPNGEFYDLDVARRIASLCWKLLNALPAKPDERQHRLTQLAINYFVLAEDAQDDNHSLAGFEDDLQVVTAVIHELGLSHLLKE*
Ga0055480_10339568	Ga0055480_103395682	F090405	AMKSALAFVFAIGLLVPGIAASDPSDCGRLMYQITHFEDMVGRAEALGRDDWAEKTQRHVDLLETRLADRCPSFSARDEQQEAARQMALLLKIAATAAAKFFTLGMY*
Ga0055480_10342363	Ga0055480_103423632	F047517	MLKVLRQDPVLVGMVEVLTDAVRYVAIVLVVLMLLGQVVAALGS*
Ga0055480_10344649	Ga0055480_103446491	F094484	MKQLALALLISGGVLSVADAAHAEGRRMIIFTLYAADGTTDSTATTTVIDFTTQVACRAARDELRRNAKAPGFGLFATCVEP*
Ga0055480_10349933	Ga0055480_103499332	F055469	MLKRTVVIFAAAAFFGGAVPTQTAQAGDDIWDLMNPSWWADEVFDNNDDDWRYYRRHYYNPYWGAHYGGNRPQYVIVLPSETKEQYPEIDLPE*
Ga0055480_10355962	Ga0055480_103559621	F093437	LAVALLTLALVGTLALGVTGSIGYRVPADPAWVRSHFLMALGTTTLLVMAHSFIMFFLIATGVELKNMEKERGWGDGFRRRTVAMKGRVFPVMML
Ga0055480_10362664	Ga0055480_103626641	F076639	MKNAEAKSEPERAPIYWMHEAIVYLGLDRLGLARPDKAMYRLIAKGALHPKKISGHLAFDKKELDMLVVNGDQKRGRGRPRKHHSA*
Ga0055480_10374188	Ga0055480_103741881	F010709	KREEADRKREALLAAHAALVAQWDAEQQQVDQELAAAVQTVDGIRAEIDASRESAEGYYEAREAAIRNTQVHRIATTVEIVRGLLFGERPMSITTTAKERGDILTDQISMVRIWVYPVLAFIVAFLPTLMVEIGFSTVFEPEKQRPAHRLGFLGRRMHQLYTRAGRLKIRRYERLSREATAKLAARDNAVAE
Ga0055480_10394832	Ga0055480_103948321	F074893	MVSGSLQAIENNGALTIRITGPMDLLLTSALRDFCHGTGVVYRRYIVDLRDVSIVRDSGLALLLMLKRLASRTGATLHVINGSNDLMRRCLKLGISPY*
Ga0055480_10395848	Ga0055480_103958482	F065951	MPVYEQSYRSHEARAPIRQVRFWPILREGLRLLLARKALL
Ga0055480_10403545	Ga0055480_104035451	F043301	VIYDKVKAGRMLRVALDVAEGALDLAARPGGAPSLRAPIVAFEKRIRTHAAKGDMDAMYDEYLRVLQEGPIIGRLLDRVHQKSFESEFYRFVSIYWERD*
Ga0055480_10404929	Ga0055480_104049292	F090930	VTAGLPDRVVVLVGTDAVALGEVARGWASSGLRTAVFVGDVTDPDGRAALEEFVAELFPAEHG*
Ga0055480_10423550	Ga0055480_104235501	F046383	MKKYLSLFVAPLFVLTSQIALACEPGQTGCLGCNDDELPVCLQALVEDVCQSTGDPVNCDTTEIYDDLERSILISTNSHMSQVRATFMRSQKYLIRN*
Ga0055480_10449306	Ga0055480_104493061	F092940	LLMAVSSAALAITWGQEDPGGEYPNVASVRGIVEADNLARFSCSGSLLHVDEQKVVLLTAAHCTDGWTGEIAAGNLDSVGVSFDKNNVINDSFSDATYYVRGGVPISFLAKDSPFEKFDYGLVVFPADAKNHQGNTVADRWGSITPVQLPPDETYLSHLIKANRTSRDLLVF
Ga0055480_10470868	Ga0055480_104708681	F041403	VRGNRWRILVGSVALGAAALGLSGGFPTASASTNGPSGTAIVECSSGTVTQGDVQTSSLFVAKVSADALPDTPGGCTVQTG*
Ga0055480_10476024	Ga0055480_104760241	F077315	VKPDALPQAQATLERLEKQFATARTATAQELKTLRKEIATVRSSAQDCLQQAEPKIEILDSELAILQPAKPKVTQAKTAQETQPAEQPEAPVSPAIARQMQDLLSSKTSLEGRIAICKLLLLKSNYLESNVGDYLRSLQTRQLLARGPTLVSVLQANLDERKRWLDF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300004055: Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences