Metagenome / Metatranscriptome Family F066178

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F066178
Family Type	Metagenome / Metatranscriptome
Number of Sequences	127
Average Sequence Length	74 residues
Representative Sequence	VDEEVGRWPCGKCGHTIVAVGHRTKAFKGTGAFIGPCPWGCGAWITRAFRLIKPGQVKACRADEWDARMATA
Number of Associated Samples	103
Number of Associated Scaffolds	127

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	86.51 %
% of genes near scaffold ends (potentially truncated)	20.47 %
% of genes from short scaffolds (< 2000 bps)	81.89 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.83

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.142 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (11.811 % of family members)
Environment Ontology (ENVO)	Unclassified (30.709 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.882 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.00% β-sheet: 33.00% Coil/Unstructured: 57.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.83
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.83
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.34.10.1: Cap-Gly domain	d1ixda1	1ixd	0.54
b.34.10.1: Cap-Gly domain	d2e3ha1	2e3h	0.51
b.34.10.0: Cap-Gly domain	d6fc5a1	6fc5	0.51
d.3.1.3: Cysteine proteinases	d1tl9a_	1tl9	0.5
b.34.10.1: Cap-Gly domain	d1whma1	1whm	0.5

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 127 Family Scaffolds
PF01192	RNA_pol_Rpb6	13.39
PF00270	DEAD	8.66
PF01627	Hpt	2.36
PF00118	Cpn60_TCP1	2.36
PF00563	EAL	2.36
PF00989	PAS	1.57
PF03795	YCII	1.57
PF12680	SnoaL_2	1.57
PF02954	HTH_8	1.57
PF12704	MacB_PCD	1.57
PF11329	DUF3131	1.57
PF06439	3keto-disac_hyd	1.57
PF00571	CBS	0.79
PF00155	Aminotran_1_2	0.79
PF00395	SLH	0.79
PF13472	Lipase_GDSL_2	0.79
PF01546	Peptidase_M20	0.79
PF13646	HEAT_2	0.79
PF13545	HTH_Crp_2	0.79
PF00011	HSP20	0.79
PF00271	Helicase_C	0.79
PF08327	AHSA1	0.79
PF13581	HATPase_c_2	0.79
PF01408	GFO_IDH_MocA	0.79
PF00076	RRM_1	0.79
PF01261	AP_endonuc_2	0.79
PF03840	SecG	0.79
PF11604	CusF_Ec	0.79
PF02518	HATPase_c	0.79
PF08241	Methyltransf_11	0.79
PF13231	PMT_2	0.79
PF13188	PAS_8	0.79
PF05960	DUF885	0.79
PF12867	DinB_2	0.79
PF03786	UxuA	0.79
PF00072	Response_reg	0.79
PF00106	adh_short	0.79
PF13564	DoxX_2	0.79
PF13432	TPR_16	0.79
PF00400	WD40	0.79

COG ID	Name	Functional Category	% Frequency in 127 Family Scaffolds
COG1758	DNA-directed RNA polymerase, subunit K/omega	Transcription [K]	13.39
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	2.36
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	2.36
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	2.36
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	2.36
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	2.36
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.57
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.79
COG1312	D-mannonate dehydratase	Carbohydrate transport and metabolism [G]	0.79
COG1314	Protein translocase subunit SecG	Intracellular trafficking, secretion, and vesicular transport [U]	0.79
COG4805	Uncharacterized conserved protein, DUF885 family	Function unknown [S]	0.79

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.14 %
Unclassified	root	N/A	33.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.14 %
Unclassified	root	N/A	33.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.14 %
Unclassified	root	N/A	33.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	33.07 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.36 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	16.54 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.36 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.57 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.79 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.54 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.57 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.57 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.79 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.54 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.57 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.79 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.54 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.79 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	0.79 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.79 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.54 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	0.79 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.79 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.79 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.54 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.79 %
unclassified Ktedonobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter	0.79 %
Stigmatella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella	0.79 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.54 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Ktedonobacter sp. SOSP1-85	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. SOSP1-85	0.79 %
Stigmatella aurantiaca	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	0.79 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.79 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.86 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	16.54 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.57 %
Stigmatella aurantiaca DW4/3-1	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca → Stigmatella aurantiaca DW4/3-1	0.79 %
Ktedonobacter sp. SOSP1-85	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. SOSP1-85	0.79 %
Luteitalea sp.	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	0.79 %
Myxococcales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	0.79 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.79 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.79 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101258134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300002917\|JGI25616J43925_10071168	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → unclassified Ktedonobacter → Ktedonobacter sp. SOSP1-85	1469	Open in IMG/M
3300004055\|Ga0055480_10320894	Not Available	626	Open in IMG/M
3300004067\|Ga0055485_10221689	Not Available	545	Open in IMG/M
3300004463\|Ga0063356_101058994	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300004463\|Ga0063356_104307046	All Organisms → cellular organisms → Bacteria → Acidobacteria	612	Open in IMG/M
3300004480\|Ga0062592_100330161	Not Available	1173	Open in IMG/M
3300004480\|Ga0062592_102104302	Not Available	560	Open in IMG/M
3300005171\|Ga0066677_10188618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1149	Open in IMG/M
3300005294\|Ga0065705_10543025	Not Available	744	Open in IMG/M
3300005334\|Ga0068869_100542523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	976	Open in IMG/M
3300005340\|Ga0070689_100608765	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300005343\|Ga0070687_100248469	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300005355\|Ga0070671_101009974	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300005365\|Ga0070688_101628497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300005406\|Ga0070703_10035203	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1532	Open in IMG/M
3300005438\|Ga0070701_10605065	Not Available	726	Open in IMG/M
3300005445\|Ga0070708_101414387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300005466\|Ga0070685_11250795	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300005467\|Ga0070706_100049732	All Organisms → cellular organisms → Bacteria	3868	Open in IMG/M
3300005471\|Ga0070698_100039483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4858	Open in IMG/M
3300005471\|Ga0070698_101586029	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300005518\|Ga0070699_100294817	All Organisms → cellular organisms → Bacteria	1454	Open in IMG/M
3300005536\|Ga0070697_100060309	All Organisms → cellular organisms → Bacteria → Acidobacteria	3092	Open in IMG/M
3300005536\|Ga0070697_100357622	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300005536\|Ga0070697_100450463	Not Available	1121	Open in IMG/M
3300005545\|Ga0070695_100005820	All Organisms → cellular organisms → Bacteria → Proteobacteria	7267	Open in IMG/M
3300005553\|Ga0066695_10615157	Not Available	649	Open in IMG/M
3300005833\|Ga0074472_10026434	Not Available	663	Open in IMG/M
3300006163\|Ga0070715_10679897	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	612	Open in IMG/M
3300006844\|Ga0075428_100106303	All Organisms → cellular organisms → Bacteria → Acidobacteria	3059	Open in IMG/M
3300006844\|Ga0075428_100877785	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	952	Open in IMG/M
3300006844\|Ga0075428_102488220	Not Available	530	Open in IMG/M
3300006845\|Ga0075421_100167999	All Organisms → cellular organisms → Bacteria	2735	Open in IMG/M
3300006845\|Ga0075421_100422516	All Organisms → cellular organisms → Bacteria	1597	Open in IMG/M
3300006845\|Ga0075421_101495148	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300006847\|Ga0075431_100669471	Not Available	1017	Open in IMG/M
3300006854\|Ga0075425_100882848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300006880\|Ga0075429_100478004	All Organisms → cellular organisms → Bacteria	1092	Open in IMG/M
3300006880\|Ga0075429_100828101	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300006918\|Ga0079216_10336081	Not Available	914	Open in IMG/M
3300009012\|Ga0066710_101411635	All Organisms → cellular organisms → Bacteria → Acidobacteria	1079	Open in IMG/M
3300009038\|Ga0099829_10718771	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	830	Open in IMG/M
3300009085\|Ga0105103_10460615	Not Available	710	Open in IMG/M
3300009100\|Ga0075418_10354207	Not Available	1567	Open in IMG/M
3300009111\|Ga0115026_10029271	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium	2816	Open in IMG/M
3300009147\|Ga0114129_11752740	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300009147\|Ga0114129_12799661	Not Available	580	Open in IMG/M
3300009177\|Ga0105248_10578242	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300009506\|Ga0118657_12176493	Not Available	636	Open in IMG/M
3300010397\|Ga0134124_10161278	All Organisms → cellular organisms → Bacteria	2008	Open in IMG/M
3300010397\|Ga0134124_11352236	All Organisms → cellular organisms → Bacteria → Acidobacteria	737	Open in IMG/M
3300010400\|Ga0134122_10603154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1015	Open in IMG/M
3300010401\|Ga0134121_10218827	Not Available	1654	Open in IMG/M
3300010401\|Ga0134121_10414277	Not Available	1221	Open in IMG/M
3300011120\|Ga0150983_13987581	Not Available	849	Open in IMG/M
3300011340\|Ga0151652_13651220	Not Available	869	Open in IMG/M
3300012204\|Ga0137374_10000048	All Organisms → cellular organisms → Bacteria	87436	Open in IMG/M
3300012207\|Ga0137381_11731026	Not Available	515	Open in IMG/M
3300012350\|Ga0137372_10047596	All Organisms → cellular organisms → Bacteria	3810	Open in IMG/M
3300012355\|Ga0137369_10030360	All Organisms → cellular organisms → Bacteria	4960	Open in IMG/M
3300012360\|Ga0137375_10894593	Not Available	706	Open in IMG/M
3300012363\|Ga0137390_11751907	Not Available	554	Open in IMG/M
3300012685\|Ga0137397_10228971	All Organisms → cellular organisms → Bacteria → Acidobacteria	1384	Open in IMG/M
3300012922\|Ga0137394_10870395	All Organisms → cellular organisms → Bacteria → Acidobacteria	753	Open in IMG/M
3300012922\|Ga0137394_11044259	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300014968\|Ga0157379_10524772	Not Available	1100	Open in IMG/M
3300014968\|Ga0157379_11413606	All Organisms → cellular organisms → Bacteria → Acidobacteria	675	Open in IMG/M
3300015200\|Ga0173480_10996135	Not Available	552	Open in IMG/M
3300018031\|Ga0184634_10196011	Not Available	919	Open in IMG/M
3300018051\|Ga0184620_10151780	All Organisms → cellular organisms → Bacteria → Acidobacteria	749	Open in IMG/M
3300018052\|Ga0184638_1199582	Not Available	704	Open in IMG/M
3300018053\|Ga0184626_10028804	All Organisms → cellular organisms → Bacteria → Acidobacteria	2286	Open in IMG/M
3300018054\|Ga0184621_10300540	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	566	Open in IMG/M
3300018059\|Ga0184615_10046307	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp.	2418	Open in IMG/M
3300018063\|Ga0184637_10050335	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	2541	Open in IMG/M
3300018063\|Ga0184637_10308597	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300018074\|Ga0184640_10533612	Not Available	513	Open in IMG/M
3300018075\|Ga0184632_10262563	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	753	Open in IMG/M
3300018084\|Ga0184629_10436230	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300020001\|Ga0193731_1100525	All Organisms → cellular organisms → Bacteria → Acidobacteria	745	Open in IMG/M
3300020581\|Ga0210399_10000081	All Organisms → cellular organisms → Bacteria	68640	Open in IMG/M
3300020581\|Ga0210399_10774803	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300021081\|Ga0210379_10151558	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca → Stigmatella aurantiaca DW4/3-1	986	Open in IMG/M
3300021090\|Ga0210377_10003733	All Organisms → cellular organisms → Bacteria	13017	Open in IMG/M
3300021559\|Ga0210409_10010566	All Organisms → cellular organisms → Bacteria	9291	Open in IMG/M
3300022756\|Ga0222622_10128859	All Organisms → cellular organisms → Bacteria	1602	Open in IMG/M
3300022756\|Ga0222622_10145374	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300025165\|Ga0209108_10550741	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300025885\|Ga0207653_10110435	All Organisms → cellular organisms → Bacteria → Acidobacteria	981	Open in IMG/M
3300025910\|Ga0207684_10599982	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	940	Open in IMG/M
3300025918\|Ga0207662_10230007	All Organisms → cellular organisms → Bacteria	1211	Open in IMG/M
3300025936\|Ga0207670_10056995	All Organisms → cellular organisms → Bacteria	2648	Open in IMG/M
3300025936\|Ga0207670_10105507	All Organisms → cellular organisms → Bacteria	2020	Open in IMG/M
3300025936\|Ga0207670_10806899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	782	Open in IMG/M
3300025942\|Ga0207689_10555612	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	964	Open in IMG/M
3300026535\|Ga0256867_10119354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1005	Open in IMG/M
3300027877\|Ga0209293_10362212	Not Available	746	Open in IMG/M
3300027909\|Ga0209382_10067814	All Organisms → cellular organisms → Bacteria	4220	Open in IMG/M
3300027909\|Ga0209382_10453816	Not Available	1419	Open in IMG/M
3300028819\|Ga0307296_10098451	All Organisms → cellular organisms → Bacteria	1566	Open in IMG/M
3300028819\|Ga0307296_10265354	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300028870\|Ga0302254_10273929	Not Available	623	Open in IMG/M
3300030606\|Ga0299906_10066676	All Organisms → cellular organisms → Bacteria	2869	Open in IMG/M
3300030619\|Ga0268386_10010496	All Organisms → cellular organisms → Bacteria	7139	Open in IMG/M
3300031093\|Ga0308197_10165046	All Organisms → cellular organisms → Bacteria → Acidobacteria	724	Open in IMG/M
3300031170\|Ga0307498_10466268	All Organisms → cellular organisms → Bacteria → Acidobacteria	510	Open in IMG/M
3300031366\|Ga0307506_10352641	All Organisms → cellular organisms → Bacteria → Acidobacteria	590	Open in IMG/M
3300031562\|Ga0310886_10313314	All Organisms → cellular organisms → Bacteria → Acidobacteria	901	Open in IMG/M
3300031720\|Ga0307469_12144632	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300031911\|Ga0307412_11325349	Not Available	649	Open in IMG/M
3300031918\|Ga0311367_11031070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	823	Open in IMG/M
3300031965\|Ga0326597_10401080	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300031965\|Ga0326597_10451886	Not Available	1413	Open in IMG/M
3300032126\|Ga0307415_101757302	Not Available	599	Open in IMG/M
3300032251\|Ga0316198_10225665	Not Available	1077	Open in IMG/M
3300033414\|Ga0316619_10492484	Not Available	996	Open in IMG/M
3300033416\|Ga0316622_100754746	Not Available	1128	Open in IMG/M
3300033433\|Ga0326726_10303207	Not Available	1499	Open in IMG/M
3300033493\|Ga0316631_10409686	Not Available	561	Open in IMG/M
3300033513\|Ga0316628_102876527	All Organisms → cellular organisms → Bacteria → Acidobacteria	632	Open in IMG/M
3300033551\|Ga0247830_10478249	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300033813\|Ga0364928_0039036	Not Available	1015	Open in IMG/M
3300034176\|Ga0364931_0167279	Not Available	712	Open in IMG/M
3300034178\|Ga0364934_0059536	All Organisms → cellular organisms → Bacteria	1417	Open in IMG/M
3300034178\|Ga0364934_0253721	Not Available	666	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.53%
Host-Associated	Host-Associated	20.47%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.63%
Plants	Host-Associated → Plants	20.47%
Aquatic	Environmental → Aquatic	18.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.32%
Sediment	Environmental → Aquatic → Sediment	11.02%
Freshwater	Environmental → Aquatic → Freshwater	4.72%
Marine	Environmental → Aquatic → Marine	3.15%
Floodplain	Environmental → Terrestrial → Floodplain	3.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.15%
Peat	Environmental → Terrestrial → Peat	2.36%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.07%
Loam	Environmental → Terrestrial → Soil → Loam	18.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.02%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.15%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	3.15%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.15%
Sediment	Environmental → Aquatic → Freshwater → Sediment	3.94%
Wetlands	Environmental → Aquatic → Marine → Wetlands	2.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.36%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.57%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.79%
Coastal	Environmental → Aquatic → Marine → Coastal	0.79%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	22.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	17.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.02%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.15%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.15%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.15%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	3.15%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.15%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	3.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.36%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.36%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.57%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.57%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.79%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.79%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.79%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.79%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.81%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.45%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	8.66%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.87%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	6.30%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.15%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	3.15%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.36%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.57%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.57%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.57%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.57%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.57%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.57%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.57%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.57%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.57%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.57%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.79%
Wetland	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Wetland	0.79%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	0.79%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	0.79%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.79%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.79%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.79%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.79%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.79%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.79%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.79%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004055	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Muzzi_PWB_D2	Environmental	Open in IMG/M
3300004067	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011340	Combined Assembly of Wetland Metatranscriptomes	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300020001	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028870	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_4	Environmental	Open in IMG/M
3300030606	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032251	Coastal sediment microbial communities from Oude Bieten Haven, Netherlands - site A anoxic	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033493	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D3_A	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M
3300034176	Sediment microbial communities from East River floodplain, Colorado, United States - 21_j17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1012581342	3300000364	Soil	VDEEVGRWACNKCGHAIVAVGHRTKAFKGTGAFIGACPWGCGAWISRAFRLIKPGQVKACRADEWDARVATA*
JGI25616J43925_100711683	3300002917	Grasslands Soil	MAAQEVGRWTCEKCGNIVVAAGLRVASFLGIGAFMGPCPWECGAWITRGFRSIRPGQVRAFRADDWDQRAQSA*
Ga0055480_103208942	3300004055	Natural And Restored Wetlands	VKGQEVGRWTCSRCGQSIVAAGPRASSYRGFGAFIGPCPWDCGAWINRSFREIRPGNVRAYRAAEWDVREHSALS*
Ga0055485_102216892	3300004067	Natural And Restored Wetlands	VAEEEVGRWSCDKCGRMIVAAGQRSRTFRGIGAFTGACPWECGAWINRGFRGIKPGQVRAYRGDEWEQRPLGAPAG*
Ga0063356_1010589942	3300004463	Arabidopsis Thaliana Rhizosphere	MAEQEVGRWKCEKCGSTIVAAGTRTASFKGVGAFSGECPWLCGAWVNRGFRSIKPGAVRAYRADEWDGRGVGAHGN*
Ga0063356_1043070462	3300004463	Arabidopsis Thaliana Rhizosphere	VDEEVGRWTCDKCGGAIVACGHRTRAFKGTGAFIGPCPWGCGAWISRAFRLIKPGQVKAVRADDWDARGATA*
Ga0062592_1003301611	3300004480	Soil	MAEQEVGRWQCEKCGSTIVAAGTRTKAFKGVGAFTGECPWACGAWVNRGFRSIKPGAVRAYRADQWDQRPLGA*
Ga0062592_1021043022	3300004480	Soil	MADKEVGRWSCDKCGSAIVAVGHVTASFKGVGAFTGTCPWECGAWINRGFRSVKPGGVRAYRADEWDQRSLGA*
Ga0066677_101886181	3300005171	Soil	VDEQEVGRWACMKCARPIVAVGHRAKAFKGTGAFIGHCPWDCGAWISRAFRLVKPGQVRACRADEWD
Ga0065705_105430251	3300005294	Switchgrass Rhizosphere	MANQEVGRWACLKCGKTIVATGQPSPKFKGTGGFSGPCPWDCGAYINRGFRSIKPGEVRVCRADEWDQRSSAS*
Ga0068869_1005425232	3300005334	Miscanthus Rhizosphere	VDEEVGRWPCSKCGHDVVAVGERTKAFKGTGAFIGPCPWGCGAWLSRAFRLIKPGQVKACRADEWDVRVATA*
Ga0070689_1006087651	3300005340	Switchgrass Rhizosphere	RSFVDEEVGRWPCSKCGHDVVAVGERTKAFKGTGAFIGPCPWGCGAWLSRAFRLIKPGQVKACRADEWDGRVAAA*
Ga0070687_1002484691	3300005343	Switchgrass Rhizosphere	RSFVDEEVGRWACGKCGHAIVAVGQRTKAFKGTGAFMGPCPWGCGAWITRAFRLIKPGQVKACRADEWDVRVATA*
Ga0070671_1010099742	3300005355	Switchgrass Rhizosphere	VDEEVGRWPCGKCGHTIVAVGHRTKAFKGTGAFTGSCPWGCGAWITRAFRLIKPGQVKACRADEWDGRVAAA*
Ga0070688_1016284972	3300005365	Switchgrass Rhizosphere	VDEEVGRWPCSKCGHDVVAVGERTKAFKGTGAFIGPCPWGCGAWLSRAFRLIKPGQVKACRADEWDGRVAAA*
Ga0070703_100352031	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VDEEVGRWTCDKCGHSIVAVGHRTKAYKGTGAFMGPCPWSCGAWITRAFRLIKPGQVKACRADEWDARSVTA*
Ga0070701_106050652	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	LREHMANQEVGRWACLKCGRTIVATGQLSPKFKGTGGFSGPCPWDCGAYINRGFRSIKPGQVRVCRADEWDQRPSAS*
Ga0070708_1014143871	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VDEEVGRWVCLKCGKPIVAVGPRDARFKGTGAFIGSCPWECGAWITRAFRSVKPGRVRACRADEWDGRTL
Ga0070685_112507951	3300005466	Switchgrass Rhizosphere	VDEEVGRWPCGKCGHTIVAVGHRTKAFKGTGAFIGPCPWGCGAWITRAFRLIKPGQVKACRADEWDVRVATA*
Ga0070706_1000497325	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VDEEVGRWVCLKCGKPIVAVGPRDARFKGTGAFIGSCPWECGAWITRAFRSVKPGRVRACRADEWDGRTLAI*
Ga0070698_1000394835	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VDEEVGRWVCIKCGKPIVAVGPRDARFKGTGAFIGSCPWECGAWITRAFRSVKPGRVRACRADEWDGRTLAI*
Ga0070698_1015860291	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VDEEVGRWTCDKCGRSIVAVGHRTKAYKGTGAFMGPCPWSCGAWITRAFRLIRPGQVKACRADEWDARSVTA*
Ga0070699_1002948172	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VDEEVGRWTCNKCGHSIVAVGHRTKAYKGTGAFMGPCPWSCGAWITRAFRLIKPGQVKACRADEWDARSVTA*
Ga0070697_1000603093	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VDEEVGRWTCDKCGHSIVAVGHRTKAYKGTGAFMGPCPWSCGAWITRAFRLIKPGQVKACRADEWDARIVTA*
Ga0070697_1003576221	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	CGKPIVAVGPRDARFKGTGAFIGSCPWECGAWITRAFRSVKPGRVRACRADEWDGRTLAI
Ga0070697_1004504631	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAEQEVGRWKCEKCGSTIVAVGRRTAAFKGVGAFTGSCPWECGAWVNRGFRSIKPGAVRAYRADQWDQRAVGA*
Ga0070695_1000058201	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MANQEVGRWACLKCGKTIVATGQPSPKFKGTGGFSGPCPWDCGAYINRGFRSIKPGEVRVCRADEWDQRPSAS*
Ga0066695_106151571	3300005553	Soil	VADQEVGRWTCQKCGNVIVAAGVRTPSFPGIGALTGSCPWECGAWISRGFRFIKPGQVRAYRASEWDEKAPASAAAGGP*
Ga0074472_100264342	3300005833	Sediment (Intertidal)	VAAEEVGRWSCEKCGQSCVAVGTKTKTFKGTGAFIGPCPWGCGAWMNRAFRFIKPGAVTGYRSDEWDQMSVGKG*
Ga0070715_106798973	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VDEEVGRWACGKCGRGIVAVGQRTKAFKGTGAFIGACPWGCGAWLSRAFRLIKPGQVKACRADEWDARVATA
Ga0075428_1001063032	3300006844	Populus Rhizosphere	MADQEVGRWTCSKCGHLIVAAGSRSGGFPGIGAFSGPCPWECGVWINRGFRKIRTGQVKVFRAAEWDQRELFGMGAA*
Ga0075428_1008777852	3300006844	Populus Rhizosphere	VDEEVGRWACDKCARSIVACGRRTRAFKGTGAFIGPCPWGCGAWITRAFRLIKPGEVKAVRADEWDARGATA*
Ga0075428_1024882201	3300006844	Populus Rhizosphere	MAAEEVGRWNCEQCGKTVVAAGERVASFAGRGAFVGPCPWDCGAWINRGFRSIRPGQVTAFRAAEWDERAKNP*
Ga0075421_1001679992	3300006845	Populus Rhizosphere	MADQEVGRWTCSKCEHLIVAAGSRSGGFPGIGAFSGPCPWECGAWINRGFRKIRTGQVKVFRAAEWDQRELFGMGAA*
Ga0075421_1004225163	3300006845	Populus Rhizosphere	VDEEVGRWTCDKCGHSIVAVGHRTKAYKGTGAFMGPCPWSCGAWITRAFRLIKPGQVRACRADEWDARSVTA*
Ga0075421_1014951481	3300006845	Populus Rhizosphere	MSNHEVGRWACGKCGKTIVATGPRSTRYKGSGSFSGPCPWDCGAYINRSFRSIRPGDVNVCRADEWDRQALAG*
Ga0075431_1006694711	3300006847	Populus Rhizosphere	MAAQEVGRWNCEKCGRSVVAAGQRVASFVGIGAFMGPCPWDCGAWINRGFRSIRPGQVTAYRAAEWDERVKNP*
Ga0075425_1008828483	3300006854	Populus Rhizosphere	VDEEVGRWPCGKCGHTIVAVGHRTKAFKGTGAFIGPCPWGCGAWITRAFRLIKPGQVKACRADEWDARMATA*
Ga0075429_1004780042	3300006880	Populus Rhizosphere	VDEEVGRWACDKCGRPIVACGRRTRAFKGTGAFIGPCPWGCGAWITRAFRLIKPGEVKAVRADEWDARGATA*
Ga0075429_1008281011	3300006880	Populus Rhizosphere	MSNHEVGRWVCGKCGQAIVATGPRSTRFKGSGSFSGPCPWDCGAYINRSFRSIRPGDVNVCRADEWDRRALAG*
Ga0079216_103360811	3300006918	Agricultural Soil	MANQEVGRWICDKCRRTIVAAGPRAKSFVGFGAFAGQCPWDCGAWIHRGFRFVRPGQVQAFRADEWDQRPLSA*
Ga0066710_1014116352	3300009012	Grasslands Soil	VADQEVGRWTCQKCGNVIVAAGVRTPSFPGIGAFTGSCPWECGAGISRGFRFIKPGQVRAYRASEWDEKAPASAAAGGP
Ga0099829_107187711	3300009038	Vadose Zone Soil	VDEEVGRWPCIKCGKAIVAIGPREKRFKGTGAFIGTCPWDCGAWISRAFRMVQPGRVRACRADEWDTRPA*
Ga0105103_104606152	3300009085	Freshwater Sediment	MGDEEVGRWRCDKCGQPIVAAGRRAASYLGVGAYTGHCPWGCGARINRGFRWIKPGEVHAFRADEWDQRPLST*
Ga0075418_103542072	3300009100	Populus Rhizosphere	MVDQEVGRWKCEKCDRAIVAAGPRTSTFMGTGAFSGRCPWECGAWINRAFRSVKPGQVRAYRADEWDGRPLGLSVLRLPPPSDRTPTRA*
Ga0115026_100292714	3300009111	Wetland	VADQEVGRWVCQKCGGTIVAAGVRESSFRGIGAFMGPCPWDCGAWINRGFRWIRPGQVSAYRAEEWDGKAMASATWP*
Ga0114129_117527402	3300009147	Populus Rhizosphere	VSDQEVGRWKCEKCGQTIVAAGRRSKAFKGTGAFTGQCPWECGAWVNRAFRSIKPGQVRAYRADEWDARALGGPGPP*
Ga0114129_127996612	3300009147	Populus Rhizosphere	MSNQEVGRWQCAKCGKTIVATGPRSKMFKASAAFSGPCPWDCGAYINRGFRSVQPGEVRLCRGD
Ga0105248_105782423	3300009177	Switchgrass Rhizosphere	MAEQEVGRWQCEKCGSTIVAAGTRTKAFKGVGAFTGEGPWACGAWVNRGFRSIKPGAVRAYRADQWDQRPLGA*
Ga0118657_121764932	3300009506	Mangrove Sediment	MSDREVGRWTCSKCGQPIVAAGRLVRTFPGIGAYIGPCPWDCGAWLNRGFRWIRPGQVKVYRADEWDALVVASGGDSVRA*
Ga0134124_101612782	3300010397	Terrestrial Soil	MAEQEVGRWQCEKCGRTIVAAGTRTRAFKGVGAFTGECPWACGAWVNRGFRSIKPGAVRAYRADQWDQRPLGA*
Ga0134124_113522363	3300010397	Terrestrial Soil	CSKCGHDVVAVGERTKAFKGTGAFIGPCPWGCGAWLSRAFRLIKPGQVKACRADEWDVRVATA*
Ga0134122_106031542	3300010400	Terrestrial Soil	VSDQEVGRWRCDKCGQSVVAAGQRSATFKGTGAFTGPCPWDCGAWINRAFRLIKPGHVAAYRADEWDQRSLAATATAG*
Ga0134121_102188272	3300010401	Terrestrial Soil	MADIEVGRWKCDKCGRTIVAVGHRTPLFKGVGAFTGPCPWECGAWVNRGFRLIKPGGVRAHRADEWDAREGATTG*
Ga0134121_104142772	3300010401	Terrestrial Soil	MAEQEVGRWQCEKCGSTIVAAGTRTKAFKGVGAFTGECPRACGAWVNRGFRSIKPGAVRAYRADQWDQRPLGA*
Ga0150983_139875812	3300011120	Forest Soil	MSGKEIGRFACGKCGREIVAAGNSSKAFQGIGAFIGPCPWECGAFINRGFRFVRPGGVHAYRAEEWDAAQAPG*
Ga0151652_136512203	3300011340	Wetland	VADQEVGRWPCDKCQQPIVAVGVRQKSFRGIGAYMGPCPWGCGAWITRGFRWIQPGNVRVLRAHEWDERLGLTG*
Ga0137374_100000484	3300012204	Vadose Zone Soil	MAQEVGRWPCEKCGNIVVAAGRRKASFLGIGAFVGPCPWDCGAWITRGFRSIQPGQVEAFRGEEWDRRPPSPLV*
Ga0137381_117310261	3300012207	Vadose Zone Soil	VADQEVGRWTCDKCGHTVVAAGLRVLSFVGIGAFTGPCPWDCGAWINRGFRSIKPGQVRAYRADEWDQLARTS*
Ga0137372_100475965	3300012350	Vadose Zone Soil	VDEEVGRWACEKCGRSIVAVGPRTRAFKGTGAFMGNCPWDCGAWITRAFRMIQPGRVRVCRAEEWDGRTLSA*
Ga0137369_100303603	3300012355	Vadose Zone Soil	MHERWRMAQEVGRWPCEKCGNIVVAAGRRKASFLGIGAFVGPCPWDCGAWITRGFRSIQPGQVEAFRGEEWDRRPPSPLV*
Ga0137375_108945932	3300012360	Vadose Zone Soil	MEIQEVGRWRCAKCQQTIVATGQRSPSFKGSGGFSGPCPWDCGAYINRGFRSIKPGQVQVCRGNEWDQRPQSS*
Ga0137390_117519072	3300012363	Vadose Zone Soil	MAQEVGRWPCEKCGNVVVAAGQRVTSFPGIGAFMGPCPWECGAWITRGFRSILPGQVQAFRGEEWDQRTLSPLV*
Ga0137397_102289713	3300012685	Vadose Zone Soil	VDEEVGRFTCEKCGHSIVAVGHRMKAYKGTGAFMGPCPWSCGAWITRAFRLIKPGQVKACRADEWDARSVTA*
Ga0137394_108703952	3300012922	Vadose Zone Soil	VDEEVGRWACEKCGHSIVAVGHRTKAYKGTGAFMGPCPWSCGAWITRAFRMIKPGQVKACRAEEWDSRVATA*
Ga0137394_110442592	3300012922	Vadose Zone Soil	VDEEVGRFTCEKCGHSIVAAGHRMKAYKGTGAFMGPCPWSCGAWITRAFRLIKPGQVKACRADEWDARSVTA*
Ga0157379_105247721	3300014968	Switchgrass Rhizosphere	MADIEVGRWKCEKCGRMIVAVGHRTPLFKGVGAFTGPCPWECGAWVNRGFRLIKPGGVRAHRADEWDARDAAASG*
Ga0157379_114136063	3300014968	Switchgrass Rhizosphere	CSKCGHDVVAVGERTKAFKGTGAFIGQCPWGCGAWLSRAFRLIKPGQVKACRADEWDGRVAAA*
Ga0173480_109961351	3300015200	Soil	MAEQEIGRWQCEKCGSTIVAAGTRTKAFKGVGAFTGECPWACGAWVNRGFRSIKPGAVRAYRADQWDQRPLGA*
Ga0184634_101960111	3300018031	Groundwater Sediment	MPADTEVGRWACEKCGRTVVAAGESARAFKGSGAYNGPCPWDCGAWINRSFRLIRPGDVRAFRADEWDGRATA
Ga0184620_101517802	3300018051	Groundwater Sediment	VDEEVGRWPCSKCGHDVVAVGQRTKAFKGTGAFIGACPWGCGAWLSRAFRLIKPGQVKACRADEWDARMATA
Ga0184638_11995821	3300018052	Groundwater Sediment	VADKEVGRWTCDKCGHAVVAAGWRVPSFMGIGAFNGPCPWECGAWINRGFRSIKPGRVSVYRA
Ga0184626_100288042	3300018053	Groundwater Sediment	VADKEVGRWTCDKCGHAVVAAGWRVPSFMGIGAFNGPCPWECGAWINRGFRSIKPGRVSVYRADEWDVLVSGSSRLGATPA
Ga0184621_103005402	3300018054	Groundwater Sediment	VDEEVGRWTCDKCGHSIVAVGHRTKAYKGTGAFMGPCPWSCGAWITRAFRLIRPGQVKACRADEWDARSVT
Ga0184615_100463075	3300018059	Groundwater Sediment	VAVQEIGRWSCEKCGQTCVAVGQKTKSFRGVGAFIGACPWGCGAWISRGFRFIKPGAVKALRSDEWEQLSSGQNQNA
Ga0184637_100503352	3300018063	Groundwater Sediment	VAEQEVGRFTCDKCGKPVVAAGRRIATFKGIGAFNGPCPWECGAWINRGFRWIKPGQAKAYRADEWDQRPQTP
Ga0184637_103085972	3300018063	Groundwater Sediment	VSDQEVGRWQCDKCGKTVVAAGQRVKSFHGTGAFSGPCPWDCGAWITRAFRWIRPGQVKAFRSEEWDQRAHAYSGTL
Ga0184640_105336122	3300018074	Groundwater Sediment	VGEQEVGRWSCSKCGNEIVAAGPRAATFRGTGAFTGSCPWDCGASINRAFRLIRPGQVAVHRAEEWDRRHRVIHSVVQIGG
Ga0184632_102625632	3300018075	Groundwater Sediment	MPADQEVGRWACEKCGRAVVAAGERARAFTGSGAYNGPCPWDCGAWISRSFRRIRPGGVQAFRADEWDRRATA
Ga0184629_104362301	3300018084	Groundwater Sediment	MSVREVGRWKCDKCGRMIVAAGPVTLQFRGVGAFTGPCPWDCGAWVNRGFRSIKPGQVLAYRADDWDQRAVPCEGAEPGAV
Ga0193731_11005252	3300020001	Soil	VDEEVGRFTCEKCGHSIVAVGHRMKAYKGTGAFMGPCPWSCGAWITRAFRLIKPGQVKACRADEWDARSVTA
Ga0210399_1000008146	3300020581	Soil	MAAQEVGRWTCEKCGNVVVAAGLRVASFLGIGAFMGPCPWECGAWITRGFRSIRPGQVKAFRAAEWDQRA
Ga0210399_107748031	3300020581	Soil	MAAQEVGRWTCEKCGNVVVAAGLRMASFAGIGAFMGPCPWECGAWITRGFRSIRPGQVKAFRAADWDQRALRALEPFQPSTT
Ga0210379_101515582	3300021081	Groundwater Sediment	LADREVGRWKCEKCGKTIVATGPRTTHFKGVGAFTGQCPWECGAWVNRGFRWVRPGDVRAHRADEWDARAFAS
Ga0210377_100037338	3300021090	Groundwater Sediment	VAAEEVGRWSCEKCGESCVAVGTKSKTFKGTGAFIGPCPWGCGAWMNRAFRFIKPGAVTVYRSDEWDQMSSRNTPS
Ga0210409_100105663	3300021559	Soil	MRSWRMAAQEVGRWTCEKCGNVVVAAGLRMASFAGIGAFMGPCPWECGAWITRGFRSIRPGQVKAFRAADWDQRALRALEPFQPSTT
Ga0222622_101288592	3300022756	Groundwater Sediment	VDEEVGRWTCDKCGHSIVAVGHRTKAYKGTGAFMGPCPWSCGAWITRAFRLIKPGQVKACRADEWDSRSVTA
Ga0222622_101453743	3300022756	Groundwater Sediment	MADQEVGRWSCDKCRSTIVAVGTRSATYKGVGAFTGTCPWECGARVNRGFRAVKPGGVRAYRADEWDQRSLGT
Ga0209108_105507411	3300025165	Soil	WACDKCGRIVVAFGPRAAGFRGIGAYMGPCPWDCGAWMNRSFRQVKPGQVRVLRGDEWDQKTSAAHQQ
Ga0207653_101104352	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	VDEEVGRWTCDKCGHSIVAVGHRTKAYKGTGAFMGPCPWSCGAWITRAFRLIKPGQVKACRADEWDARSVTA
Ga0207684_105999822	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VDEEVGRWVCLKCGKPIVAVGPRDARFKGTGAFIGSCPWECGAWITRAFRSVKPGRVRACRADEWDGRTLAI
Ga0207662_102300073	3300025918	Switchgrass Rhizosphere	VDLSLTGGWLPIAVEVVAVGERTKAFKGTGAFIGPCPWGCGAWLSRAFRLIKPGQVKACRADEWDGRVAAA
Ga0207670_100569954	3300025936	Switchgrass Rhizosphere	MAEQEVGRWQCEKCGSTIVAAGTRTKAFKGVGAFTGECPWACGAWVNRGFRSIKPGAVRAYRADQWDQRPLGA
Ga0207670_101055072	3300025936	Switchgrass Rhizosphere	VDEEVGRWPCSKCGHDVVAVGERTKAFKGTGAFIGPCPWGCGAWLSRAFRLIKPGQVKACRADEWDGRVAAA
Ga0207670_108068991	3300025936	Switchgrass Rhizosphere	VDEEVGRWPCGKCGHTIVAVGHRTKAFKGTGAFIGPCPWGCGAWITRAFRLIKPGQVKACRADEWDAQVATA
Ga0207689_105556121	3300025942	Miscanthus Rhizosphere	VDEEVGRWPCSKCGHDVVAVGERTKAFKGTGAFIGPCPWGCGAWLSRAFRLIKPGQVKACRADEWDVRVATA
Ga0207651_102064384	3300025960	Switchgrass Rhizosphere	CGSTIVAAGTRTKAFKGVGAFTGECPWACGAWVNRGFRSIKPGAVRAYRADQWDQRPLGA
Ga0256867_101193542	3300026535	Soil	VARSSSALRMEGDVVTDQEVGRWTCDRCGKTVVAVGRRLMAFRGIGAFMGPCPWDCGAWINRGFRCIKPGEVKAFRAEEWDQRPLGP
Ga0209293_103622122	3300027877	Wetland	VADQEVGRWVCQKCGGTIVAAGVRESSFRGIGAFMGPCPWDCGAWINRGFRWIRPGQVSAYRAEEWDGRAM
Ga0209382_100678143	3300027909	Populus Rhizosphere	VDEEVGRWACDKCARSIVACGRRTRAFKGTGAFIGPCPWGCGAWITRAFRLIKPGEVKAVRADEWDARGATA
Ga0209382_104538162	3300027909	Populus Rhizosphere	MADQEVGRWTCSKCEHLIVAAGSRSGGFPGIGAFSGPCPWECGAWINRGFRKIRTGQVKVFRAAEWDQRELFGMGAA
Ga0307296_100984512	3300028819	Soil	VDEEVGRWTCDKCGHSIVAVGHRTKAYKGSGAFMGPCPWSCGAWITRAFRLIKPGQVKACRADEWDARSVTA
Ga0307296_102653543	3300028819	Soil	VDEEVGRWPCSKCGHDVVAVGQRTKAFKGTGAFIGSCPWGCGAWLTRAFRLIKPGQVKACRADEWDV
Ga0302254_102739291	3300028870	Fen	RIEPSRPSEVASQEVGRWRCDKCSQTIVAAGQRLKSFEGIGAYMGPCPWGCGAWITRGFRWIRPGDVAVFRDQEWDRRPA
Ga0299906_100666761	3300030606	Soil	VEGQEIGRWVCQKCGNAIVAAGPRARSFRGIGAFIGPCPWDCGAWINRGFREIRPGQVRAYRAEEWDTRKPADTAWP
Ga0268386_100104963	3300030619	Soil	MEGDVVTDQEVGRWTCDRCGKTVVAVGRRLMAFRGIGAFMGPCPWDCGAWINRGFRCIKPGEVKAFRAEEWDQRPLGP
Ga0308197_101650463	3300031093	Soil	SHVDEEVGRWTCDKCGHSIVAVGHRTKAYKGTGAFMGPCPWSCGAWITRAFRLIKPGQVKACRADEWDARSVTA
Ga0307498_104662682	3300031170	Soil	EVGRWACGKCGHAIVAVGHRTKAFKGTGAFIGACPWGCGAWISRAFRLIKPGQVKACRADEWDARVATA
Ga0307506_103526412	3300031366	Soil	VDDEVGRWACTKCGHAIVAVGQRTKEFKGTGAFIGACPWGCGAWLSRAFRLIKPGQVKACRADEWDARVATTA
Ga0310886_103133141	3300031562	Soil	GAMADQEVGRWACVKCGKTIVAAGQRSPQFKGTGVFAGPCPWDCGAYIDRGFRSIRPGQVRVCRADEWDQRPSAS
Ga0307469_121446322	3300031720	Hardwood Forest Soil	VDEEVGRWACNKCGHDIVAVGQRTKAYKGTGAFIGPCPWGCGAWLSRAFRLIMPGQVKACRADEWDVRV
Ga0307412_113253491	3300031911	Rhizosphere	ESELGRWSCDKCGGAIVAAGTPAAAFRGIGAFCGPCPFGCGAFINRGFRHVKPGDVRAYRADEWAQRATSNP
Ga0311367_110310701	3300031918	Fen	VADEEVGRWKCEKCGKTIVAAGPRTATFKGTGAFTGQCPWECGAWVNRAFRSIKPGDVRAYRLDEWDERTLEA
Ga0326597_104010804	3300031965	Soil	MPADKEVGRWACEKCGRTVVAAGERVREFKGSGAYNGPCPWDCGAWITRAFRLIRPGGVKAFRADEWDGRATA
Ga0326597_104518862	3300031965	Soil	MNDQEVRRWTCEKCGRAIVAAGRRTATFEGTGAFTGQCPWECGAWVNRAFRSIKPGEVRAYRADEWDQRPVSA
Ga0307415_1017573021	3300032126	Rhizosphere	MAEQEVGRWPCEKCGQLIVAAGRRSSAFKGTGAFSGRCPWECGAWINRAFRSIKPGEVQAYRADEWDKRSLGA
Ga0316198_102256651	3300032251	Sediment	VPDEEVGRWACPKCGKMIVAAGLIARSFRGFGAFTGPCPWDCGTWINRGFRWIRPGHVKAYRANEWDGRALA
Ga0316619_104924842	3300033414	Soil	VADQEVGRWVCQKCGGTIVAAGVRESSFRGIGAFMGPCPWDCGAWINRGFRWIRPGQVSAYRAEEWDGKAMASATWP
Ga0316622_1007547462	3300033416	Soil	VADREVGRWVCQKCGGTIVAAGVRESSFRGIGAFMGPCPWDCGAWINRGFRWIRPGQVSAYRAEEWDGKAMASATWP
Ga0326726_103032074	3300033433	Peat Soil	VDRGLSEVMSDQEVGRWTCEKCGNVVVAVGRRVPSFRGIGAFTGPCPWDCGAWINRGFRWIKPGQAKAYRADEWDQR
Ga0316631_104096861	3300033493	Soil	VADKEVGRWKCTKCGKPIVAAGRRVESFLGIGAFMGYCPWDCGAWINRGFRRIRPGEVKLYRADEWDQRLLSPQSVA
Ga0316628_1028765271	3300033513	Soil	GRWKCTKCGKPIVAAGRRVESFLGIGAFMGYCPWDCGAWINRGFRRIRPGEVKLYRADEWDQRLLSPQSVA
Ga0247830_104782492	3300033551	Soil	MADQEVGRWACEKCGKTIVAAGPVARTFKGTGAFTGQCPWGCGAWVNRAFRSIRPGEVLAYRAEEWDQRALPQ
Ga0364928_0039036_771_1004	3300033813	Sediment	MSDQEVGRWQCDKCGKTVVAAGQRVKSFHGTGAFSGPCPWDCGAWITRAFRWIRPGQVKAFRSEEWDQRAHAYSGTL
Ga0364931_0167279_241_462	3300034176	Sediment	MADREVGRWKCEKCGKTIVATGPRTTHFKGVGAFTGQCPWECGAWVNRGFRWVRPGDVRAHRADEWDARAFAS
Ga0364934_0059536_22_270	3300034178	Sediment	MANQEVGRWKCGKCGKTIVAAGLRTPKFKGFGAYAGKCPWDCGAWVNRSFRSIKPGEVQAYRADEWDQGALTQHDASEAHSA
Ga0364934_0253721_167_430	3300034178	Sediment	MNILGEAGGLRPARVMPQEVGRFTCSKCGHEIVAAGQRAVSYRGTGAFTGLCPWDCGAWINRGFRLIRNGQVTLHRADEWDQRAVPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F066178

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences