Sample 3300002673

3300002673: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF129 (Metagenome Metatranscriptome, Counting Only)

Overview

Basic Information
IMG/M Taxon OID	3300002673 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0085736 \| Gp0056676 \| Ga0005480
Sample Name	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF129 (Metagenome Metatranscriptome, Counting Only)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	10432695
Sequencing Scaffolds	54
Novel Protein Genes	60
Associated Families	58

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	41
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	2
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Myroides → Myroides odoratimimus	2
All Organisms → cellular organisms → Bacteria → Acidobacteria	3
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Sordariales → Podosporaceae → Podospora → Podospora anserina	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia niastensis	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies
Type	Environmental
Taxonomy	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Harvard Forest Long Term Ecological Research (Lter) Site In Petersham, Ma, For Long-Term Soil Warming Studies

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	forest biome → solid layer → forest soil
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline)

Location Information
Location	Harvard Forest LTER, Petersham, MA, USA
Coordinates	Lat. (^o)	42.471116	Long. (^o)	-72.17263	Alt. (m)	N/A	Depth (m)	0 to .1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000159	Metagenome / Metatranscriptome	1863	Y
F000475	Metagenome / Metatranscriptome	1097	Y
F001233	Metagenome / Metatranscriptome	741	Y
F001247	Metagenome / Metatranscriptome	737	Y
F001273	Metagenome / Metatranscriptome	733	Y
F001533	Metagenome / Metatranscriptome	676	Y
F003787	Metagenome / Metatranscriptome	468	Y
F007311	Metagenome / Metatranscriptome	353	Y
F007323	Metagenome / Metatranscriptome	353	Y
F007328	Metagenome / Metatranscriptome	353	Y
F007348	Metagenome / Metatranscriptome	353	Y
F008027	Metagenome / Metatranscriptome	340	Y
F008172	Metagenome / Metatranscriptome	337	Y
F008209	Metagenome / Metatranscriptome	337	Y
F016972	Metagenome / Metatranscriptome	243	Y
F018180	Metagenome / Metatranscriptome	236	Y
F018423	Metagenome / Metatranscriptome	235	Y
F019794	Metagenome / Metatranscriptome	227	N
F019863	Metagenome / Metatranscriptome	227	Y
F027128	Metagenome / Metatranscriptome	195	Y
F029356	Metagenome / Metatranscriptome	188	Y
F030305	Metagenome / Metatranscriptome	185	N
F031388	Metagenome / Metatranscriptome	182	Y
F033813	Metagenome / Metatranscriptome	176	Y
F035644	Metagenome / Metatranscriptome	171	Y
F036049	Metagenome / Metatranscriptome	170	Y
F037443	Metagenome / Metatranscriptome	168	Y
F038364	Metagenome / Metatranscriptome	166	N
F040506	Metagenome / Metatranscriptome	161	N
F047195	Metagenome / Metatranscriptome	150	Y
F055474	Metagenome / Metatranscriptome	138	Y
F057922	Metagenome / Metatranscriptome	135	N
F058585	Metagenome / Metatranscriptome	134	N
F059538	Metagenome / Metatranscriptome	133	N
F060503	Metagenome / Metatranscriptome	132	N
F062337	Metagenome / Metatranscriptome	130	N
F063149	Metagenome / Metatranscriptome	130	Y
F065469	Metagenome / Metatranscriptome	127	Y
F067296	Metagenome / Metatranscriptome	125	Y
F068321	Metagenome / Metatranscriptome	124	N
F068528	Metagenome / Metatranscriptome	124	Y
F069071	Metagenome / Metatranscriptome	124	Y
F070926	Metagenome / Metatranscriptome	122	N
F071421	Metagenome / Metatranscriptome	122	N
F074465	Metagenome / Metatranscriptome	119	Y
F075760	Metagenome / Metatranscriptome	118	Y
F078064	Metagenome / Metatranscriptome	116	N
F078069	Metagenome / Metatranscriptome	116	Y
F079670	Metagenome / Metatranscriptome	115	N
F084660	Metagenome / Metatranscriptome	112	N
F087650	Metagenome / Metatranscriptome	110	Y
F089697	Metagenome / Metatranscriptome	108	N
F091420	Metagenome / Metatranscriptome	107	N
F094687	Metagenome / Metatranscriptome	105	Y
F094972	Metagenome / Metatranscriptome	105	Y
F098663	Metagenome / Metatranscriptome	103	Y
F098814	Metagenome / Metatranscriptome	103	N
F100428	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
Ga0005480J37268_100001	Not Available	684	Open in IMG/M
Ga0005480J37268_100069	Not Available	592	Open in IMG/M
Ga0005480J37268_100106	Not Available	517	Open in IMG/M
Ga0005480J37268_100107	Not Available	649	Open in IMG/M
Ga0005480J37268_100121	Not Available	818	Open in IMG/M
Ga0005480J37268_100135	Not Available	517	Open in IMG/M
Ga0005480J37268_100150	Not Available	836	Open in IMG/M
Ga0005480J37268_100171	Not Available	509	Open in IMG/M
Ga0005480J37268_100215	Not Available	878	Open in IMG/M
Ga0005480J37268_100224	Not Available	901	Open in IMG/M
Ga0005480J37268_100227	Not Available	760	Open in IMG/M
Ga0005480J37268_100295	Not Available	705	Open in IMG/M
Ga0005480J37268_100328	Not Available	686	Open in IMG/M
Ga0005480J37268_100383	Not Available	540	Open in IMG/M
Ga0005480J37268_100557	Not Available	510	Open in IMG/M
Ga0005480J37268_100680	Not Available	666	Open in IMG/M
Ga0005480J37268_100729	Not Available	599	Open in IMG/M
Ga0005480J37268_101069	Not Available	510	Open in IMG/M
Ga0005480J37268_101156	Not Available	2398	Open in IMG/M
Ga0005480J37268_101321	Not Available	557	Open in IMG/M
Ga0005480J37268_101493	Not Available	590	Open in IMG/M
Ga0005480J37268_101519	Not Available	573	Open in IMG/M
Ga0005480J37268_101668	Not Available	654	Open in IMG/M
Ga0005480J37268_101781	Not Available	544	Open in IMG/M
Ga0005480J37268_101842	Not Available	936	Open in IMG/M
Ga0005480J37268_102619	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
Ga0005480J37268_102852	Not Available	1390	Open in IMG/M
Ga0005480J37268_102911	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1772	Open in IMG/M
Ga0005480J37268_103404	Not Available	582	Open in IMG/M
Ga0005480J37268_103473	Not Available	502	Open in IMG/M
Ga0005480J37268_104744	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes → Agaricomycetes incertae sedis → Polyporales → Fibroporiaceae → Fibroporia → Fibroporia radiculosa	1651	Open in IMG/M
Ga0005480J37268_105001	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
Ga0005480J37268_105170	Not Available	592	Open in IMG/M
Ga0005480J37268_105253	Not Available	588	Open in IMG/M
Ga0005480J37268_105279	Not Available	501	Open in IMG/M
Ga0005480J37268_106373	Not Available	825	Open in IMG/M
Ga0005480J37268_107372	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Myroides → Myroides odoratimimus	532	Open in IMG/M
Ga0005480J37268_107501	All Organisms → cellular organisms → Bacteria → Acidobacteria	764	Open in IMG/M
Ga0005480J37268_108688	Not Available	1172	Open in IMG/M
Ga0005480J37268_109239	Not Available	1049	Open in IMG/M
Ga0005480J37268_110013	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
Ga0005480J37268_110038	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
Ga0005480J37268_110810	All Organisms → cellular organisms → Bacteria → Acidobacteria	710	Open in IMG/M
Ga0005480J37268_111576	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	856	Open in IMG/M
Ga0005480J37268_111811	Not Available	549	Open in IMG/M
Ga0005480J37268_111909	Not Available	839	Open in IMG/M
Ga0005480J37268_111926	Not Available	550	Open in IMG/M
Ga0005480J37268_112743	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → sordariomyceta → Sordariomycetes → Sordariomycetidae → Sordariales → Podosporaceae → Podospora → Podospora anserina	552	Open in IMG/M
Ga0005480J37268_112872	Not Available	504	Open in IMG/M
Ga0005480J37268_113417	Not Available	565	Open in IMG/M
Ga0005480J37268_114193	Not Available	526	Open in IMG/M
Ga0005480J37268_115163	Not Available	534	Open in IMG/M
Ga0005480J37268_118505	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Myroides → Myroides odoratimimus	573	Open in IMG/M
Ga0005480J37268_119569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Massilia group → Massilia → Massilia niastensis	684	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0005480J37268_100001	Ga0005480J37268_1000011	F057922	RDSYWLLRIPGGSGGQGTVTVPQRRSTKMVPSDPANSPFSDWHAQSEHSTQGSGDVVLLLPVAAFIRPRISAPEPICLFYLLEARVSKQTFARPHRLLPFESHRSEVNAPALSLRRNSELFFQSVRP*TPILACALTPSGYVRCPKPVTVFQAQSSQTSIQLPLPFRTFILPDRSAQSVARSEKLAFVSGPFSLRSPQASIIFNNYPLTDHRSRFATVYQAYCSLNL
Ga0005480J37268_100032	Ga0005480J37268_1000321	F062337	RCVLRAADRLAADLPTCVGVRPPARPAITTDSHLALSFSSAGLSASGSHRLPLQQLACAGCCCNPQLALAVATFRHTGGVLPTRIGCSALRLYRFRITRLAPCASTSGWAFDAPLTSTEPCIAGKPSMSIPYPPVRASSGSASLTTFDLRRLLQSLAQPAIPLRLSPQVSPSGWADGDLPTLIGFSFHQPFRQPTPDALLG
Ga0005480J37268_100069	Ga0005480J37268_1000691	F003787	SK*SDFQHCSPPACTVLNIAIGSAGRFACLLPDNGFRRLPDQCFQTGRGLLSRSGPDARNSLSLVRNGRSFRSLHSEVNVPGLLLRFQLAASTARLALLLRYPNRLAPVWAASMLLARCSLRDSLEDRASSLHSPWGLLPPAGSKRSAGLAAFRPAFRIRPISLRSPQPVSISSVSTADHRFRSATFPGACCSSNL
Ga0005480J37268_100085	Ga0005480J37268_1000851	F098814	RSELPGALPVDFPITGFAGIRINASRRAAFSLRTGLSARNGLSLARYDLRLRGFRAEVIVPGPLLRLRILRFCHPFRLLLHCQSRFAPFSAASTLQTRCGVAVRFRRPRLQLRLPLGNVTSLRIDASTALAACQPTFQGCPISVRSPQPFSISRFGCGSSFPARYCPVGLLFLKP
Ga0005480J37268_100106	Ga0005480J37268_1001061	F075760	FQVTSGQHRSSPACTALSIVLRSAGRFASRLHENRFRRLPLHRLEARRVHLHNRTVCSRRRFPRPQRFPLTRIPFRGQRSPPDASLTYKPANFTRSIFRLRDLPPVCPSGRRHPRLRPVALLPIRSSSRAANLHSPSGAFAPSGSKRSTGYPAFRSTFQNRPIFVRSPRPFH
Ga0005480J37268_100107	Ga0005480J37268_1001071	F078064	VKLADPEDARTGGYGILIDGLPAMQGSVEVRGASKAQPEVDAQGASRVNRNR*
Ga0005480J37268_100107	Ga0005480J37268_1001072	F059538	CLVNSVVQPLLRPSATPVARLQLSLPLLPLAAPVSNLRLASAALLPARPRANPPARIGVVSPGSVGGKCSAFAVYYALPIDWLLTFQLALASCLQLGLRLLPTHIWRCPSARQVSQFPVLTGYCCNN*
Ga0005480J37268_100121	Ga0005480J37268_1001212	F008172	VAPGQRTVKSGGRPGANGKDADTKSQTCVYLVRKPATAIASRSELRPHSKFSDRKALDGPAMRPVTPLAVENGVGKLAAKARQMQHGKESVANSHPPFV
Ga0005480J37268_100135	Ga0005480J37268_1001351	F055474	MPFGIKAFGQFSLPEVHLRKTPDFLSLPVARLHINDDDHGSTFQVRYVSRGSLFSVNL
Ga0005480J37268_100150	Ga0005480J37268_1001501	F007311	VPSCWPPHFAVAPVTDYSMLDAWRSLLHTDCSALHFVRPVQTTDLTRCSTLSALRLPRIAPRSIPCARAGHGSPRATNCSVVQHLELCPDCELLRPRDLAFHAAFGLLLARRFLLSAARGLLRARPLALHAGLRIAPYADISRPYVFHGFLHGRH*
Ga0005480J37268_100171	Ga0005480J37268_1001711	F031388	GEREEIGRIRKVSREAAESVERFDPEGCKSPKGEWRQRKQLSEPERRVATGLRRRSCPQLGQTSGGRGAESGPGDESSWEVPKWQARTVDPGMEASEREQPLQARERPLRGVGSMEEIDCGVPGGIDPRVEKSALGERNGETLSATSCGALFRACR*
Ga0005480J37268_100215	Ga0005480J37268_1002151	F058585	LWRFNLDHSQYSRCCVLRLPQWPPSSFRWRCYHWLRWLSELRLASGRCTPARPVANLPARIGFVSFGSTGCKPSTCVDCSALPLVLRRSIWLAPDDPGLIGLTPDNPGSTRLAPHGPFLRLGRQPTSDSHRCRPLARLAASSGLRLMLPLPLGWLRFQFAPAASPSALTVREPLGLRLVAPSPAEPVMHSLFQLNLASPAKPSMSILYPPALASSGIFQLNNFRLASAFALLVRPAIPLRLAPQVSPSVRVYGHRSGSHRLFAP*
Ga0005480J37268_100224	Ga0005480J37268_1002241	F030305	VPGVFRMPLQFIGSCIVPFGFLVPVPSFLFPALSDLARRCSSGRPVPRVSDRTGDEAPSCPGSSVFSAVPADGSSSRPDSRILQLGSPQIARLPRLSTSCLAVDERPGCPVRSIIWLYRRRRFRVAPNLTSFGGTVSNSPSRPGSSLLQPLPLMVLRVAPGAPSSGFAGGDSSGCPEALIPRLCRLVAFRVSPDLPPSDICRFRFSGLPQIGFLGGSMMNPRFARTLHPRSIQLTSLQVAPKFPLPAAPRMNLQTHSGLAFLPTLRCSLNLYPLIACRRTGLLRTTINQFPIACRAGLQS
Ga0005480J37268_100227	Ga0005480J37268_1002272	F029356	MTTLILNPRGKDGGRPPARVAGRGEAKTRKLGRLPGESPGTEVRNVSAEAKAVRLLERSLGT
Ga0005480J37268_100295	Ga0005480J37268_1002952	F089697	ILITRSSAGAASSGSPSGRPPAFAGAATSGCAGFQNSDLRRCPALQLDRWPTIRLGSVSCPSARPAANLRLASGVPLFRSSFGDPSSLRLTILVSSGLRPTILVPSGLRRMALPPARPTTYLRLASVPFFSSAGGFIWLAPYAAPAPRLAPRPVCTGCFTLRLHRP*
Ga0005480J37268_100328	Ga0005480J37268_1003281	F019794	LDESVVQPVLRPPATPETSLQLALPLPPLAAPASNLRLASAALRPARPGANPPARIGVLSFGSTGGKRRAFAVCIALPFVRWLTFQLALASFLRLGRRPTADSHLVLILQLGSCPTSGSHRLLLQPSACASCCYDSPACAGRRPFAIPAANFRLASDVTPSSFTGFDSPDLRRMFLPPVGPLMHPLLQPNLASPAEPSMSIQSPPVLAPSGSASFNNLRLASVFAMSG
Ga0005480J37268_100383	Ga0005480J37268_1003831	F018180	GALARCHGSDLLSLRLPFAHKPAVFFSTSPAFWKVNEACLLSDPSRDERSFCPAFRRLSFG*LRIFSRPPESSAPCWRTVATVYPLGNCDSLRLETCLSYLTRLGTVSCSFLAAQSLFRVTDGARTPPEELVNSASSTLPCGFALEGLSQPAWPNLSPVAWDYPGGFRHLSCVRLRLPRF
Ga0005480J37268_100557	Ga0005480J37268_1005571	F060503	PKGFTSTTLVHRRHARPEPRQSGRWDNICSAPRTQLSSQVRISALQPICAPFPIGTDISKRPFARSERQPASRPPFRGQCSRPTGSISTGPSPNPIQSDVPDRLSGLHSPSGVFMPLRIVAFNRSSAPEAHLLKLPDVPSLPAAITHKCVGRGSTFQVRYFPPGSLLP*
Ga0005480J37268_100680	Ga0005480J37268_1006801	F033813	SWNAEGGRKKISGVPRIIPGDWGKVVPGWLAQPLKRARKG*
Ga0005480J37268_100729	Ga0005480J37268_1007293	F029356	MTTLILNPRGKDGGRPPARVAGRGEATTRKLDRLPGESPGTDVRKINAEAKAVRLLERSL
Ga0005480J37268_101069	Ga0005480J37268_1010692	F074465	VPSDPSGSLFSDRHARSERGIRIWRDVGPLLPAAGFSRLRIKALVRVR*
Ga0005480J37268_101156	Ga0005480J37268_1011563	F068528	MRTTDFCFPLPEYEHPCLVSYRHLFEAYASPLTKRACTRGQGTGDLAFHDAEFASVGFLGLARGISFFRVLPIEPDL*
Ga0005480J37268_101321	Ga0005480J37268_1013211	F065469	PAGMHRHRATQPESPGVFLSAPRHLLLKATAQCFQAHLPALLAGTGTSKRPFSLPKRLPVSGPPFRGQRSPTSSMPYRSFVLPVRSPAPPRAMVSPIPREILTGSPLPDSRSALPIVPRISTPPRGLSNPSGSKRSIRFLTGKLTFSPPIALRSPALSPFLFGVNSGSPVQARSAFSGLTVPQ
Ga0005480J37268_101493	Ga0005480J37268_1014931	F094972	MNPLPDSVPAFLADTEPPLPFRDFYIPLQIAAFDSAFRSKAHLYELPDSPSLPVSFMLLTISLRIIVPGPLRLTRFDCSVNL
Ga0005480J37268_101519	Ga0005480J37268_1015191	F001233	SRIIPGDWGKDESGWLVHPLINRAARSGSGGRIHQFLWRRSRAVGNAKKELRG*
Ga0005480J37268_101668	Ga0005480J37268_1016681	F071421	PPKGAQPGTAPGTRSSTEAAQQAIQLPPLSFLRDGPSQFHSGLTATMICDMRLSGGGNLSPVTPKSGYRFRPTSRNLAKVVAIGQPPTDPIAACWENQQDFS*
Ga0005480J37268_101781	Ga0005480J37268_1017811	F068321	HRVSLYRMLTSVSERLHSIHWFRTDSFGNLLPAWARLGPLSVNEQGAALSHRRFDRGSFRCDRAPNGVAWRFPDWTAVGFACPSPFLGSRSFWISVTRILATCWARFDHDRGSLSPRLVEPLAAILTRIASGVFFADDFRVALSLAADFRRARYKLLRTDLAWKVGLRIRSLFLFRRVLP
Ga0005480J37268_101842	Ga0005480J37268_1018422	F067296	SGYRLANLRFAPAINPSASPSNRPPTRVGCRSPALPSNLNLEPFIDCQILRQVFRSISSLRLQLTFRPNLPAALRLPSPASLPVPPSSRPATVAACRSSSHALQSSSSLRLLSIFRLNLPVSLFDLRHVVDLPALPTNPTSDSRCSHPQALPSS
Ga0005480J37268_102619	Ga0005480J37268_1026192	F084660	LKVSHSSGSSTQKRPPERRGRGLIQNEADLLDTDLLPIRAAVESPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0005480J37268_102852	Ga0005480J37268_1028521	F035644	MGSPESPEDWALSEYVHSDYFSESERDAEADIPVPDRLLPKRDYRRLVGALRLSQKIGLLIWLNRMDLLSLGGKERLLYLQSKASYEALEAGLRFARRLSEEKKLQSDFMHSMRELNRRPQSKHFRQTSERRRIGVGYRDKGMLPEQSSRARKAAWEESFIPTESIPEGLLEILKRYLPSCLTEDEEWVDLSVFPGTFGSEGDSEMTKLLHPL*
Ga0005480J37268_102911	Ga0005480J37268_1029113	F016972	VRLTPLTDEILIVNLYLTINDTDRVSFRAKTSRYGPHELGYRRATKTFTK*
Ga0005480J37268_103404	Ga0005480J37268_1034041	F091420	EQSSRVERSETGTMIRRLITKSEWRAGSEGKSGGSQGELFSGTLN*
Ga0005480J37268_103473	Ga0005480J37268_1034731	F079670	LKKGLKVLEMVKRERNKIITIVNSLKLRTNFNKFVLINI*
Ga0005480J37268_104744	Ga0005480J37268_1047441	F098663	VLHGCRQSVLEVRLTPLTDEIPIVNLNLTINNIYKILFGAKTSRYGPHELGYRRATKTFTKCKTILFLKRKIEELIIKKS*
Ga0005480J37268_105001	Ga0005480J37268_1050011	F007348	LRFQIVRPHSGEEKKIFMVEEHIIETRNSSWQLPAIIVLGLVAIAGLGFGWNASSKLDSTQQAVTTEVKSAQQSTQQDMSSLKDRLAQDEKANADLQGDLKVVTDKLKITQGQLKKARVQAELVAKQNDETTQKLSALDTSVHTELATKAGTDDVKNVDTKVTAVGADLNTTKEDLKM
Ga0005480J37268_105170	Ga0005480J37268_1051701	F040506	FQVTFSALFTTGMLGIEHRILKRRTLRGLAPPNLFFPKPRINASPRAAAFALLQNGASARNGLSLAHNGFRFHELHCRVNAPGLLLRVLASRFRNPFGLPAPLPALVCPRTDRFNAGKPVAASATGSLDCSNSLHSPSGFLHPSGSKRSAVLAAQRPAFRLRPISVRSPPPIAI
Ga0005480J37268_105253	Ga0005480J37268_1052531	F036049	MVALGTPLLATMLLGGPLAGPDYTVHVACTVETDAACPALGPGNSTDFIVRNFTDVGLAALEIPANQLLSPMDTAYEMSIHHAWIPWLETPWHLQNSQARSTHETCAGEVAQLHLNPALTDLDWLRVRLWQVPSLQPQRCAIAPTVCLTDC*
Ga0005480J37268_105279	Ga0005480J37268_1052791	F008027	SLELSNINMGGRDIKILVANYGGKDVTSIARQQYKQNQHFTATNAAFGDPLPNVPKFLHVIYSYHGVLGSVSIPEGKNFEPHPPAFVLLGALYGGADVTAKVHPLGQSFKVENAHFGDPNPGIFKNFTVAYVKNGALRTKVHKEHEQVNLD*
Ga0005480J37268_106373	Ga0005480J37268_1063731	F027128	GEEAPAAGERSFHELQQVRAFLKMLGVGAEFIKDALRQLTAGRSASVPNVSLSEKAVKSAGFGNLVNLARSNS*
Ga0005480J37268_107372	Ga0005480J37268_1073721	F001273	MRIDRYTKTILTIIALLLAVIVLKPLFQPQPAMADGKYAGVQFSYSGGNHAFFDARSGDVWEYGDNGQFRQHYKVHEFGKDHDRDHGH*
Ga0005480J37268_107501	Ga0005480J37268_1075012	F001247	MKTKTWKVMTNTGKHADLESGLEKKEIQRPVHISAREFVHWLAPESRIDDNSLRSLFKQ*
Ga0005480J37268_108688	Ga0005480J37268_1086883	F087650	MMESSVQLDHIATWNEVRDALEYSSRDAFELLPARDGDVELKFDLSSGVGCLSEDLAWLRVAREALDSRSN*
Ga0005480J37268_109239	Ga0005480J37268_1092392	F019863	MSYSEARNHFEKARNNNADLGVVDMLEGLKHLSQAIEEDIRTLGQGIRDIRDSQKSKQIPSSFS*
Ga0005480J37268_110013	Ga0005480J37268_1100131	F018423	LRVNANPSSLSVRATKMRHSFALAVATLALAMPVSAQDDVPIIKTQAASAFVWGEDNFRGVVSSSVRDPVTDNVIRKLEHGGVEVSSRAGFESIRSGEGGELLAFTATIVNNTEAELLVKQGGASVDGRVALPLPVVRSKKGLNKKVRNQVWDLASMNCFSSGFLPNDTVLSSNSSSKPFNVISKRALTVSSVVKDPRHYSVLCSE
Ga0005480J37268_110038	Ga0005480J37268_1100381	F008209	KTKMKRALLIVAAALMFLNTLVVPNVAHADGGSTGGNCSGQSACKP*
Ga0005480J37268_110038	Ga0005480J37268_1100382	F047195	MLQPHSLLWHYLWIAPYFFLAVLALLMHRRGLHRDFPAFFCYAVFEAVGGTAIYVIDVSPRISATIYWWSYLVFLVIEVFIKLVVVGEVLTHLLRRYPSLGRLAKVLISSVGIVLVFTATVIAAYANPTSFW
Ga0005480J37268_110464	Ga0005480J37268_1104641	F070926	RSPAGMHGRSMACVRTVVTFSSAPRIGFPTRISAREMTRCFSARSSDLGTAFRSPAATVPFRXPPRQDRSCPIPSIRLRTLPQARSVWSFPPRPLLADGVGSALPTRCPIPDSQLPDVHQFPLPFRTFQSFGLKALYRRQSLGKLTLADSPIFLRSPTAPIITNRTRCRIIVPDPLPSARLTAL
Ga0005480J37268_110588	Ga0005480J37268_1105881	F000159	MKFNSILRSLALAAALVSTVPLLAKPFSKTINIAQSAKIGRVDLQAGEYRLQIDGNKASVEKGRQVLAESEGRWEDRATKSSSDSVLIGENGQVKEVRFSGQTRVFVFNE*
Ga0005480J37268_110810	Ga0005480J37268_1108102	F007323	MPRSLKWVESQNFLGFGCSECNWKFKPSGEPGADSLGEMKRKYEAERDKEFAAHVCAKHADSPRPQAT*
Ga0005480J37268_111576	Ga0005480J37268_1115761	F069071	VPAAVVEATAMVMVDVPEPGAAMDVGLKLTVTPVGWPVADNAMAELKPPETEVVIVDVPLLPCTTETDAGEAEMVKLGLVEVGARALMRPVPLGLPHPVTRSYPVTAEKLPDVPLVMSWNSEP*
Ga0005480J37268_111811	Ga0005480J37268_1118111	F100428	MRRVVVLALLAMVLPMAAWADGITLTNKFGTISIQDSGIVSKGSQLTSFNGITAPPGHSLGTVSYSTGALISGSIAAGGVFSSAGSTFDVVGKGNFGEPKGPIFTGGFTGNIDWTLVSHVGQTYVFTLSGDLTGQLYNGVMVTGTTTQTITTHPGQLNQ
Ga0005480J37268_111909	Ga0005480J37268_1119091	F078069	NIGNYYANKYGSPDSLPNLPRPWQKRDPSPEPETWAEWGTNIGNYYASKYGSPDSVPNLPRPWQKRDPSPEPETWAEWGTNIGNYYANKYGSPDSLPNLPRPWLKREPEPEPESWADWGKAIGDHYAAPWTKREPETWAEWGTNLGNYYASKYGSPDSVPNLPRPWQKREPSPEPETWAEWGTNIGNYYANKYGSPDSLPNLPRPWEKREPEPETWSEWGQNIGNYYANKYSSPDSVPGLPQF*
Ga0005480J37268_111926	Ga0005480J37268_1119261	F094687	MKMTTLVKASIFAATLGFASMLAPAARAQADAMPNPDEFPFEAPQASAAHPVQLAATKVADANFEGKVSLPFNVHCGTRNLKPGQYLLSVKSEGSSRVITLHGAGQDMTMRVHEVSTHRGTSQSALLVRKSGEGRRLEAVYVAGLNATLYLSASSDESHTRMEKLPIS*
Ga0005480J37268_112743	Ga0005480J37268_1127431	F001533	PRIVTSSEGSMRPAEDMDHLRVLRDKVGRFREEIADIRELNDQFRRAVRNDAMAQIAQGRRQERLQAIQHELVQLTDLGRRMDSTEQMKEEPRSRLHPVKQKRSA*
Ga0005480J37268_112872	Ga0005480J37268_1128721	F038364	VPQEQFLEAKLRKAFDEVSYSFEKILGEVRGDSNLVLAKQAVNQLQISLNQFENLLKEGGVTVGSCDSIKYLYQEIEHPLSELRRYFMKEPSEILTDKAGVVYVNALKASFRRLMDIAEGMDQGHSSILKSAL*
Ga0005480J37268_113417	Ga0005480J37268_1134171	F007328	GRAAMAGLTRPPVLRRTMNDVADGLLLDVREISITDLEFAGEDSALDRALSRILTSSTRSEFSSFNSSI*
Ga0005480J37268_114193	Ga0005480J37268_1141932	F000475	MVRIRRWVVGKRKKVVWSEPQLPPYVKINPDSPPGHGGEGIQPGDISMGAVAAEFLKMDEGEDEAPA*
Ga0005480J37268_115163	Ga0005480J37268_1151632	F037443	MNANYWEQRTALIRDGAVRVLSLSTPEEVDYWRDQLKAHRRNRHELEVMTWGNHASTLRGRADYGHLDEIAEYVFQFIRTSEGKLLKFG
Ga0005480J37268_118505	Ga0005480J37268_1185051	F001273	MRIDLYTKSILTLIALLLAVIVLKPIFEPQPAMAEGKYASVQFSYSGGNHAFFDTRSGDVWEYGDNGQFRQHYKVHEFGKDHDRDHDH*
Ga0005480J37268_119569	Ga0005480J37268_1195691	F063149	GLMRFCKTLAIVAVVALAMVGAKSAKADSSPDPRVKIVVPTDPVIEACSDVPEGVTCFTMNDESHPVTVQGPTLAQLESPGYDLITDFIYEPDDSNCNPTSCPNPGADTLLDLWIAITPTIEGAAYTCALGTPPGGQTPAFNVCPEAVGTSGGLELLELGCDPTVSACTGMLAGEEGSAEVAPEPGELAMLAMGIALVGFFGWKRRRAVELNRADQQNFAVC*

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300002673: Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF129 (Metagenome Metatranscriptome, Counting Only)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences