Metagenome / Metatranscriptome Family F084660

Basic Information
Family ID	F084660
Family Type	Metagenome / Metatranscriptome
Number of Sequences	112
Average Sequence Length	69 residues
Representative Sequence	MQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Number of Associated Samples	102
Number of Associated Scaffolds	112

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	41.44 %
% of genes near scaffold ends (potentially truncated)	65.18 %
% of genes from short scaffolds (< 2000 bps)	80.36 %
Associated GOLD sequencing projects	99
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Bacteria (55.357 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.893 % of family members)
Environment Ontology (ENVO)	Unclassified (32.143 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.679 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.10% β-sheet: 0.00% Coil/Unstructured: 61.90%
Feature Viewer

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Pfam ID	Name	% Frequency in 112 Family Scaffolds
PF12704	MacB_PCD	2.68
PF03683	UPF0175	2.68
PF13620	CarboxypepD_reg	1.79
PF13414	TPR_11	1.79
PF07676	PD40	0.89
PF02735	Ku	0.89
PF00069	Pkinase	0.89
PF00881	Nitroreductase	0.89
PF00106	adh_short	0.89
PF01436	NHL	0.89
PF13847	Methyltransf_31	0.89
PF01292	Ni_hydr_CYTB	0.89
PF13432	TPR_16	0.89
PF04055	Radical_SAM	0.89
PF14417	MEDS	0.89
PF04879	Molybdop_Fe4S4	0.89
PF03781	FGE-sulfatase	0.89
PF00486	Trans_reg_C	0.89
PF05199	GMC_oxred_C	0.89
PF13429	TPR_15	0.89
PF01740	STAS	0.89
PF02776	TPP_enzyme_N	0.89
PF13655	RVT_N	0.89
PF08534	Redoxin	0.89

COG ID	Name	Functional Category	% Frequency in 112 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.57
COG2886	Predicted antitoxin, contains HTH domain	General function prediction only [R]	2.68
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	0.89
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.89
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	0.89
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.89
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	0.89
COG3038	Cytochrome b561	Energy production and conversion [C]	0.89
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	0.89
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	0.89

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.36 %
Unclassified	root	N/A	44.64 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.36 %
Unclassified	root	N/A	44.64 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.36 %
Unclassified	root	N/A	44.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	38.39 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	30.36 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.68 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.36 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.89 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.89 %
Candidatus Brocadiia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.36 %
Candidatus Brocadiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	0.89 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.36 %
Candidatus Brocadiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae	0.89 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.89 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.36 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.89 %
Candidatus Brocadia	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia	0.89 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.64 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.36 %
Candidatus Brocadia fulgida	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → Candidatus Brocadia fulgida	0.89 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	0.89 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.89 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig32504	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1047	Open in IMG/M
3300001163\|JGI12705J13279_100431	Not Available	807	Open in IMG/M
3300001180\|JGI12695J13573_1002384	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300002673\|Ga0005480J37268_102619	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300002915\|JGI25387J43893_1059028	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300004103\|Ga0058903_1522988	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300004119\|Ga0058887_1003472	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	787	Open in IMG/M
3300004120\|Ga0058901_1575802	Not Available	539	Open in IMG/M
3300005434\|Ga0070709_10124120	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1754	Open in IMG/M
3300005437\|Ga0070710_10100884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1719	Open in IMG/M
3300005545\|Ga0070695_100978931	Not Available	687	Open in IMG/M
3300006041\|Ga0075023_100171750	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	815	Open in IMG/M
3300006172\|Ga0075018_10862167	Not Available	501	Open in IMG/M
3300006173\|Ga0070716_101081599	Not Available	638	Open in IMG/M
3300006796\|Ga0066665_10007153	All Organisms → cellular organisms → Bacteria	6195	Open in IMG/M
3300006796\|Ga0066665_10037650	All Organisms → cellular organisms → Bacteria → Acidobacteria	3239	Open in IMG/M
3300006797\|Ga0066659_10715506	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300009029\|Ga0066793_10683460	Not Available	583	Open in IMG/M
3300010858\|Ga0126345_1073853	Not Available	551	Open in IMG/M
3300010858\|Ga0126345_1087013	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300010858\|Ga0126345_1275634	Not Available	610	Open in IMG/M
3300010867\|Ga0126347_1398810	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	764	Open in IMG/M
3300011270\|Ga0137391_10003395	All Organisms → cellular organisms → Bacteria → Acidobacteria	12068	Open in IMG/M
3300012096\|Ga0137389_10141008	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1964	Open in IMG/M
3300012199\|Ga0137383_10325845	All Organisms → cellular organisms → Bacteria	1125	Open in IMG/M
3300012202\|Ga0137363_11193696	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300012203\|Ga0137399_10034908	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3510	Open in IMG/M
3300012205\|Ga0137362_10821954	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300012211\|Ga0137377_10021572	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5708	Open in IMG/M
3300012361\|Ga0137360_10013486	All Organisms → cellular organisms → Bacteria	5277	Open in IMG/M
3300012361\|Ga0137360_10834122	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	794	Open in IMG/M
3300012361\|Ga0137360_11310867	Not Available	625	Open in IMG/M
3300012362\|Ga0137361_10948849	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	779	Open in IMG/M
3300012363\|Ga0137390_10110847	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2715	Open in IMG/M
3300012399\|Ga0134061_1227423	Not Available	534	Open in IMG/M
3300012403\|Ga0134049_1352312	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300012409\|Ga0134045_1244669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	740	Open in IMG/M
3300012410\|Ga0134060_1508162	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	784	Open in IMG/M
3300012683\|Ga0137398_10299362	All Organisms → cellular organisms → Bacteria → Acidobacteria	1081	Open in IMG/M
3300012924\|Ga0137413_10053165	All Organisms → cellular organisms → Bacteria	2357	Open in IMG/M
3300015054\|Ga0137420_1005438	Not Available	667	Open in IMG/M
3300015054\|Ga0137420_1149548	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3070	Open in IMG/M
3300015054\|Ga0137420_1409230	All Organisms → cellular organisms → Bacteria → Acidobacteria	1856	Open in IMG/M
3300015242\|Ga0137412_10081707	All Organisms → cellular organisms → Bacteria	2629	Open in IMG/M
3300017943\|Ga0187819_10407344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300019158\|Ga0184580_109703	Not Available	710	Open in IMG/M
3300019182\|Ga0184598_112797	Not Available	596	Open in IMG/M
3300019183\|Ga0184601_118658	Not Available	856	Open in IMG/M
3300019189\|Ga0184585_127653	Not Available	731	Open in IMG/M
3300019190\|Ga0184600_123810	Not Available	512	Open in IMG/M
3300019789\|Ga0137408_1073083	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2315	Open in IMG/M
3300019789\|Ga0137408_1166655	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2496	Open in IMG/M
3300019882\|Ga0193713_1184281	Not Available	541	Open in IMG/M
3300019887\|Ga0193729_1003286	All Organisms → cellular organisms → Bacteria	7966	Open in IMG/M
3300019888\|Ga0193751_1009502	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5187	Open in IMG/M
3300019890\|Ga0193728_1230058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300020199\|Ga0179592_10008782	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4349	Open in IMG/M
3300020579\|Ga0210407_11219215	Not Available	565	Open in IMG/M
3300020579\|Ga0210407_11387624	Not Available	522	Open in IMG/M
3300020580\|Ga0210403_10823800	Not Available	736	Open in IMG/M
3300020582\|Ga0210395_10607544	Not Available	820	Open in IMG/M
3300020583\|Ga0210401_10545700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1021	Open in IMG/M
3300021088\|Ga0210404_10603379	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	624	Open in IMG/M
3300021151\|Ga0179584_1347113	Not Available	567	Open in IMG/M
3300021178\|Ga0210408_10096371	All Organisms → cellular organisms → Bacteria	2324	Open in IMG/M
3300021180\|Ga0210396_10076497	Not Available	3041	Open in IMG/M
3300021401\|Ga0210393_10406875	Not Available	1109	Open in IMG/M
3300021402\|Ga0210385_10538275	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	888	Open in IMG/M
3300021420\|Ga0210394_10694050	Not Available	892	Open in IMG/M
3300021474\|Ga0210390_10257441	Not Available	1478	Open in IMG/M
3300021474\|Ga0210390_10770303	Not Available	798	Open in IMG/M
3300021559\|Ga0210409_10006097	All Organisms → cellular organisms → Bacteria	12577	Open in IMG/M
3300022502\|Ga0242646_1011123	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	756	Open in IMG/M
3300022507\|Ga0222729_1038865	Not Available	627	Open in IMG/M
3300022522\|Ga0242659_1042602	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	781	Open in IMG/M
3300022528\|Ga0242669_1050342	Not Available	711	Open in IMG/M
3300022533\|Ga0242662_10131853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	741	Open in IMG/M
3300022557\|Ga0212123_10037818	All Organisms → cellular organisms → Bacteria	4737	Open in IMG/M
3300022708\|Ga0242670_1021400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	776	Open in IMG/M
3300022714\|Ga0242671_1027067	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	842	Open in IMG/M
3300022726\|Ga0242654_10158630	Not Available	761	Open in IMG/M
3300023539\|Ga0247555_100971	Not Available	825	Open in IMG/M
3300023544\|Ga0247542_102442	All Organisms → cellular organisms → Bacteria → Acidobacteria	686	Open in IMG/M
3300023551\|Ga0247546_102105	Not Available	721	Open in IMG/M
3300023552\|Ga0247551_104597	Not Available	557	Open in IMG/M
3300025910\|Ga0207684_10019566	All Organisms → cellular organisms → Bacteria	5791	Open in IMG/M
3300025939\|Ga0207665_10187255	All Organisms → cellular organisms → Bacteria	1502	Open in IMG/M
3300026301\|Ga0209238_1002496	All Organisms → cellular organisms → Bacteria	7273	Open in IMG/M
3300026551\|Ga0209648_10824461	Not Available	507	Open in IMG/M
3300026557\|Ga0179587_10543202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	763	Open in IMG/M
3300026698\|Ga0208843_101120	Not Available	533	Open in IMG/M
3300027107\|Ga0208367_110342	Not Available	644	Open in IMG/M
3300027591\|Ga0209733_1151398	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300027603\|Ga0209331_1128344	Not Available	610	Open in IMG/M
3300027655\|Ga0209388_1053886	All Organisms → cellular organisms → Bacteria → Acidobacteria	1161	Open in IMG/M
3300027660\|Ga0209736_1021438	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1980	Open in IMG/M
3300027903\|Ga0209488_10684991	Not Available	736	Open in IMG/M
3300028828\|Ga0307312_10731131	Not Available	656	Open in IMG/M
3300029701\|Ga0222748_1060809	Not Available	668	Open in IMG/M
3300030776\|Ga0075396_1006013	Not Available	534	Open in IMG/M
3300030842\|Ga0075404_11621000	Not Available	565	Open in IMG/M
3300030853\|Ga0075372_11367922	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1093	Open in IMG/M
3300030885\|Ga0265743_122172	Not Available	504	Open in IMG/M
3300030946\|Ga0075379_11549463	Not Available	713	Open in IMG/M
3300030970\|Ga0075381_11403270	Not Available	651	Open in IMG/M
3300031023\|Ga0073998_10028498	Not Available	644	Open in IMG/M
3300031057\|Ga0170834_110078034	Not Available	520	Open in IMG/M
3300031231\|Ga0170824_113373698	Not Available	512	Open in IMG/M
3300031720\|Ga0307469_10263494	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → Candidatus Brocadia fulgida	1396	Open in IMG/M
3300031823\|Ga0307478_10164772	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300031962\|Ga0307479_10441115	Not Available	1286	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.11%
Engineered	Engineered	0.89%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.54%
Aquatic	Environmental → Aquatic	3.57%
Modeled	Engineered → Modeled	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.54%
Sediment	Environmental → Aquatic → Sediment	1.79%
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.89%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.46%
Loam	Environmental → Terrestrial → Soil → Loam	15.18%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.79%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.89%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.89%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.89%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.36%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.36%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.79%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.89%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.89%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.89%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.89%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	23.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	13.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.57%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	3.57%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.79%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.79%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.89%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.89%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.89%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.89%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.89%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
3300001163	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2	Environmental	Open in IMG/M
3300001180	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3	Environmental	Open in IMG/M
3300002673	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF129 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002915	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004119	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF210 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300010858	Boreal forest soil eukaryotic communities from Alaska, USA - C3-2 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012403	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012409	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300019158	Soil microbial communities from Bohemian Forest, Czech Republic ? CSI1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019182	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019183	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZA1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019189	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019190	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZE3 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022502	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022708	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023539	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023544	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSU4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023551	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023552	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026698	Forest soil microbial communities from Willamette National Forest, Oregon, USA, amended with Nitrogen - NN411 (SPAdes)	Environmental	Open in IMG/M
3300027107	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF029 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300029701	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030776	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030842	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030853	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030885	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030946	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA7 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030970	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB1 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031023	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFA (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0504.00002780	2166559005	Simulated	MQNESDLLDTDLLPIRTAVESTVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
JGI12705J13279_1004312	3300001163	Forest Soil	MKNEDAAWCKMQTYESDLLDTDLLPIRTAVKSPFVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
JGI12695J13573_10023842	3300001180	Forest Soil	MQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNXKSAPFPAR*
Ga0005480J37268_1026192	3300002673	Forest Soil	LKVSHSSGSSTQKRPPERRGRGLIQNEADLLDTDLLPIRAAVESPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
JGI25387J43893_10590282	3300002915	Grasslands Soil	EQRGRGLMQNKSDLLDTDLLPIRTAEGIPPAVCEAVPTGWPVVICXASCIGSSNVLELSTNRKSAPFPAR*
Ga0058903_15229882	3300004103	Forest Soil	DLLDTDLLPIRTAMKSPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0058887_10034722	3300004119	Forest Soil	QKRPHEKRGRSLIQNEADLLDTDLLPIRTAVENPPVVCEAAPTGCPVIICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0058901_15758022	3300004120	Forest Soil	SDLLDTDLLPIRTAMKSPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0070709_101241201	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LKVSHSSGSSTQKKRPHEKRGRGLIQNEADLLDIVLLPIRTAVENPPTVCEAAPMACAIVICFASCIGSSRVLELSTNR
Ga0070710_101008844	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LKVSHSSGSSTQKKRPHEKRGRGLIQNEADLLDIVLLPIRTAVENPPTVCEAAPMACAIVICFASCIGSSRVLE
Ga0070695_1009789311	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	KVSHSSGSSTQKRPHEKRGRSLIQNQADLLDTDLLPIRTAVENPPVVCEAAPTGCPVIICFASCIGSSRVLEFEHQ*
Ga0075023_1001717501	3300006041	Watersheds	MQTYESDLLDTDLLPIRTAVKSPFVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0075018_108621672	3300006172	Watersheds	GRSLIQNESDLLDTDLLPIRTAVKSPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0070716_1010815991	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0066665_100071533	3300006796	Soil	MQNESDLLDTDLLPIRTTVENPPVVCEAAPTGCPVVICFASCIGSSSVLELSTNRKSAPFPVR*
Ga0066665_100376501	3300006796	Soil	MQNESDLLDTDLLPIRAAVENPPAVCEAAPTGCPVVICFASCIGSSRVLELSTIRKSAPFPAK*
Ga0066659_107155062	3300006797	Soil	MQNKSDLLDTDLLPIRTAEGIPPAVCEAVPTGWPVVICFASCIGSSNVLELSTNRKSAPFPAR*
Ga0066793_106834601	3300009029	Prmafrost Soil	KRPHEKRGRGLIQNESDLLDTDLLPIRAAMENPSAVCEAAPTGCPVVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0099829_101842273	3300009038	Vadose Zone Soil	LKVSHSSGSSTQKRPPEKRGRGLMQNESDLLDTDLLPIRTAVANPPGVWEAAPTARAVVICFASFIGSSSGLELEHQREVSSVSGEVMLSP*
Ga0126345_10738531	3300010858	Boreal Forest Soil	LIQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKLAPFPAR*
Ga0126345_10870131	3300010858	Boreal Forest Soil	LKVSHSSGSSTQKRPHEKRGRGLIQKEQGLLDTGLLPIRTAVENPPGVWEAAPTACAVVICLASFIGSSS
Ga0126345_12756341	3300010858	Boreal Forest Soil	PDLKVSHSSGSSTQKRPPEQRGRGLIQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0126347_13988101	3300010867	Boreal Forest Soil	TGSSTQKRPQEQRGRGLIQNEAVLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0137391_1000339511	3300011270	Vadose Zone Soil	EKRGRGLIQNESDLLDTDSLPIRAAVENPPVVYEAAPMAYAIVICFASCIGSSRGLELEHQ*
Ga0137389_101410083	3300012096	Vadose Zone Soil	MQNESDLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0137383_103258453	3300012199	Vadose Zone Soil	MQNKSDLLDTDLLPIRTAEGIPPAVCEAAPTGCPVVICFASCIGSSNVLELSTNRK
Ga0137363_111936962	3300012202	Vadose Zone Soil	MQNEADLLDTDLLPIRTTVENPPVVCEAAPTGCPVVICFASCIGSSRVLELS
Ga0137399_100349081	3300012203	Vadose Zone Soil	MQNESDLLDTDLLPIRTAVGNPPGVREAAPTACAVVICFASCIGSSRGLELEHQ*
Ga0137362_108219541	3300012205	Vadose Zone Soil	TQKRPHEKRGRGLIQNEADLLDSDLLPIRTAVENPPVMCEAAPTGCPVVICFASCIGSSSGLELEHQ*
Ga0137377_100215725	3300012211	Vadose Zone Soil	MQNKSDLLDTDLLPIRTAEGIPPAVCEAAPTSCPVVICFASCIGSSNVLELSTNRKSAPFPAR*
Ga0137360_100134861	3300012361	Vadose Zone Soil	MQNEADLLDTDLLPIRTTVENPPVVCEAAPTGCPVVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0137360_108341221	3300012361	Vadose Zone Soil	KVSHSSGSSTQKRPHEKRGRGLIQNEADLLDTDLLPIRTAVENPPVMCEAAPTGCPVVICFASCIGSSSGLELEHQ*
Ga0137360_113108671	3300012361	Vadose Zone Soil	MQNEADLLDTDLLPIRATVENPPVVCEAAPTGCPVVICFASCIGSSSDLELSTNRKSAPFPAR*
Ga0137361_109488491	3300012362	Vadose Zone Soil	STQKRPHEKRGRGLIQNEADLLDTDLLPIRTAVENPPVMCEAAPTGCPVVICFASCIGSSSGLELEHQ*
Ga0137390_101108471	3300012363	Vadose Zone Soil	LKVSHSSGSSTQKRPPEQRGRGLIQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFAS
Ga0134061_12274231	3300012399	Grasslands Soil	KNAPPEKRGRSLMQNESDLLDTDLLPIRTTVENPPVVCEAAPTGCPVVICFASCIGSSSVLELSTNRKSAPFPAR*
Ga0134049_13523121	3300012403	Grasslands Soil	SHSSGSSTQKRPHEKRGRSLIQNEADLLDTDLLPIRTAMENPPVVCEAAPMAYAIVICFASCISSSRVLELSTNRKSAPFPAR*
Ga0134045_12446691	3300012409	Grasslands Soil	GSSTQKRPHEKRGRGLIQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0134060_15081621	3300012410	Grasslands Soil	MQNEADLLDTDLLPIRTAVKSPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0137398_102993621	3300012683	Vadose Zone Soil	LKVSHSSGSSTQKRPHEKRGRGLIQNEADLLDTDLLPIRTAVENPPVMCEAAPTGCPVVICFASCIGSSSGLELEHQ*
Ga0137413_100531651	3300012924	Vadose Zone Soil	LKVSHSSGSSTQKRPHEKRGRSLIQNEADLLDTDLLPIRTTVENPPVVCEAAPTGCPVIICFASCI
Ga0137420_10054381	3300015054	Vadose Zone Soil	GFPFIRLEHPQKRPLEKRGRGLIQNEADLLDTDLLPIRTTVKNPPLVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0137420_11495485	3300015054	Vadose Zone Soil	MQNEADLLDTDLLPIRTTVENPPVVCEAAPTGCPVVICFASCIGSSRDLELSTNRKSAP
Ga0137420_14092301	3300015054	Vadose Zone Soil	MQNESDLLDTDLLPIRTAVKSPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR*
Ga0137412_100817071	3300015242	Vadose Zone Soil	LKVSHSSGSSTQKRPHEKRGRSLIQNEADLLDTDLLPIRAAMENPPVVCEAAPTGCPVVICFASCIGSSRVLELSTNRKSAPF
Ga0187819_104073441	3300017943	Freshwater Sediment	EPDLKVSHSSGSSTQKRPPEKRRRGLIQNEADLLDTDLLPIRAAVENPPVVCEAAPMGCPVVICFASCIGFSSVL
Ga0184580_1097031	3300019158	Soil	TQKRPPEKRGRGLSQNEAGLLDTDLLPIRTAVENLPAMCEAAPTGCPVVICFASFVGSSRVLELSTNGKSAPFPAR
Ga0184598_1127971	3300019182	Soil	RGRGLSQNEAGLLDTDLLPIRTAVENLPAMCEAAPTGCPVVICFASFVGSSRVLELSTNGKSAPFPAR
Ga0184601_1186581	3300019183	Soil	STQKRPPEKRGRGLSQNEAGLLDTDLLPIRTAVENLPAMCEAAPTGCPVVICFASFVGSSRVLELSTNGKSAPFPAR
Ga0184585_1276531	3300019189	Soil	EKRGRGLSQNEAGLLDTDLLPIRTAVENLPAMCEAAPTGCPVVICFASFVGSSRVLELSTNGKSAPFPAR
Ga0184600_1238101	3300019190	Soil	KRGRGLSQNEAGLLDTDLLPIRTAVENPPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRNSAPFPAR
Ga0137408_10730831	3300019789	Vadose Zone Soil	MQNEADLLDTDLLPIRAAVENPPVVCEAAPTSCPVVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0137408_11666552	3300019789	Vadose Zone Soil	MQNESDLLDTDLLPIRTTVENPPVVCEAAPTGCPVVICFASCIGSSSVLELSTNRKSAPFPVR
Ga0193713_11842811	3300019882	Soil	SGSSTQKRPPEQRGRGLIQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0193729_10032868	3300019887	Soil	MQNESDLLDTDLLPIRTAEGIPPAVCEAAPTGCPVVICFASCIGSSNVLELSTNRKSAPFPAR
Ga0193751_10095022	3300019888	Soil	VQNESDLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0193728_12300581	3300019890	Soil	RPPEQRGRGLIQNEADLLDTDLLPIRTAEGIPLAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0179592_100087828	3300020199	Vadose Zone Soil	MQNEADLLDTDLLPIRTTVENPPVVCEAAPTGCPVVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0210407_112192152	3300020579	Soil	MQNESDLLDTDLLPIRTTVENPPVVCEAAPMAYAIVICFVSCIGSSSDLELSTNRK
Ga0210407_113876241	3300020579	Soil	MQNKSDLLDTDLLPIRTTAEKPPVVCEAAPTGCPVVICFASCIGSSNVLELSTNRKSAPFPAR
Ga0210403_108238002	3300020580	Soil	MQNKSDLLDTDLLPIRTAEGIPPAVCEAAPTGCPVVICFASFIGSSNVLELSTNRKSAPFPAR
Ga0210395_106075441	3300020582	Soil	MQNESDLLDTDLLPIRTAEGIPPAVCEAAPTGCPVVICFASFIGSSNVLELSTNRKSAPFPAR
Ga0210401_105457002	3300020583	Soil	MQTYESDLLDTDLLPIRTAVKSPFVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0210404_106033791	3300021088	Soil	LKVSHSSGSSTQKRPHEKRGRSLIQNESDLLDTDLLPIRTAVENPPVVCEAAPTGCPVVICFASCIGFLKSPFCFSILFCQIK
Ga0179584_13471131	3300021151	Vadose Zone Soil	TQKRPPEQRGRGLIQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0210408_100963713	3300021178	Soil	MKVSHSSGSSTQKRPHKKRGRGLMQNESDLLDTDLLPIRTTVENPPVVCEAAPMAYAIVICFVSCIGSSSDLELSTNRK
Ga0210396_100764974	3300021180	Soil	MQNKSDLLDTDLLPIRTAEGIPPAVCEAAPTGCPVVICFASCIGSSNVLELSTNRKSAPFPAR
Ga0210393_104068751	3300021401	Soil	MQNKSDLLDTDLLPIRTAEGIPPAVCEAAPTGCPVVICFASFIGSSNVLELSTNRKSAPFPARLSCPNLATQPPRQQ
Ga0210385_105382751	3300021402	Soil	IQFESDLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0210394_106940501	3300021420	Soil	MQNEADLLDTDLLPIRTTVENPPVVCEAAPTGCPVVICFASCIGSPSDLELSTNRK
Ga0210390_102574411	3300021474	Soil	LKVSHSSGSSTQKRPPERRGRGLIQNEADLLDTDLLPIRAAVESPVVCEAAPMAYAIVICFASCIGSS
Ga0210390_107703031	3300021474	Soil	QNEADLLDTDLLPIRAAVESPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPA
Ga0210409_100060979	3300021559	Soil	VQNESDLLDTDLLPIRTAMKSPFVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0242646_10111231	3300022502	Soil	STQKRPPERRGRGLIQNEADLLDTDLLPIRAAVESPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0222729_10388651	3300022507	Soil	KRPPERRGRGLIQNEADLLDTDLLPIRAAVESPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0242659_10426022	3300022522	Soil	ERRGRGLIQNEADLLDTDLLPIRAAVESPVVCEATPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0242669_10503421	3300022528	Soil	SSTQKRPPERRGRGLIQNEADLLDTDLLPIRAAVESPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0242662_101318531	3300022533	Soil	GRSLIQNEADLLDTDLLPIRTAVENPPVVCDAAPAGCPVVICFASCIGSSNVLELSTNRKSAPFPAR
Ga0212123_1003781810	3300022557	Iron-Sulfur Acid Spring	MQTYESDLLDTDLLPIRTAVKSPFVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPA
Ga0242670_10214001	3300022708	Soil	QKRPHEKRGRGLMQTYESDLLDTDLLPIRTAVKSPFVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0242671_10270671	3300022714	Soil	RAARPGAQKRPPERRGRGLIQNEADLLDTDLLPIRAAVESPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0242654_101586301	3300022726	Soil	STQKRPPEKRGRGLLRNESDLLDTDLLPIRTAVENPPLVCEAAPMADAIVICFASCIGSSRVLELSPNRKSAPFPAR
Ga0247555_1009711	3300023539	Soil	GLEGFPSSGSSTQKRPPEKRGRGLSQNEAGLLDTDLLPIRTAVENLPAMCEAAPTGCPVVICFASFVGSSRVLELSTNGKSAPFPAR
Ga0247542_1024421	3300023544	Soil	HSSGSSTQKRPHEKRGRSLIQNEADLLDTDLLPIRTAVENLPAMCEAAPTGCPVVICFASFVGSSRVLELSTNGKSAPFPAR
Ga0247546_1021051	3300023551	Soil	GLSQNEAGLLDTDLLPIRTAVENLPAMCEAAPTGCPVVICFASFVGSSRVLELSTNGKSAPFPAR
Ga0247551_1045971	3300023552	Soil	GLEGFPSSGSSTQKRPPEKRGRGLSQNEAGLLDSDLLPIRTAVENLPAMCEAAPTGCPVVICFASFVGSSRVLELSTNGKSAPFPAR
Ga0207684_100195665	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	LTLPSIAIAPLLSSSREPDLKVSHSSGSSTQKRPHEKRGRGLIQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSS
Ga0207665_101872551	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0209238_10024964	3300026301	Grasslands Soil	MQNKSDLLDTDLLPIRTAEGIPPAVCEAVPTGWPVVICFASCIGSSNVLELSTNRKSAPFPAR
Ga0209648_108244611	3300026551	Grasslands Soil	PDLKVSHSSGSSTQKRPPEQRGRGLIQNEADLLDTDLLPIRTTEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0179587_105432021	3300026557	Vadose Zone Soil	LKVSHSSGSSTQKRPDEKRGRGLIRNESDLLDTDLLPIRTAVENPPLVCEAAPMAYAIVICFASCI
Ga0208843_1011201	3300026698	Soil	QNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0208367_1103421	3300027107	Forest Soil	LIQNEADLLDTDLLPIRAAVESPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0209733_11513981	3300027591	Forest Soil	MQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKS
Ga0209331_11283441	3300027603	Forest Soil	MQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICCASCIGSSRVLELSTNRKSAPFPAR
Ga0209388_10538861	3300027655	Vadose Zone Soil	MQNEADLLDTDLLPIRTTVENPPVVCEAAPTGCPVVICFASCIGSSRVLELST
Ga0209736_10214381	3300027660	Forest Soil	MQNEADLLDTDLLPIRTAERIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0209488_106849912	3300027903	Vadose Zone Soil	KVSHSSGSSTQKRPHEKRGRGLIQNEADLLDTDLLPIRTAVENPPVMCEAAPTGCPVVICFASCIGSSSGLELEHQ
Ga0307312_107311311	3300028828	Soil	LIQNEADLLDTDLLPIRTAQGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0222748_10608092	3300029701	Soil	GSSTQKRPPEQRGRGLIQNEADLLDTDLLPIRAAVESPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0075396_10060131	3300030776	Soil	MQNEADLLDTDLLPIRTVEEIPPAVCEAAPTGCPVVICFASCIGSSSGLELSTNRKSAPFPAR
Ga0075404_116210001	3300030842	Soil	MQNEADLLDTDLLPIRTAEGIPPAVCEAAPTGCPVVICFASCIGSSNVLELSTNRKSAPFPAR
Ga0075372_113679221	3300030853	Soil	KTPPEQRGRGLIQNEADLLDTDLLPIRTTVENPPVVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0265743_1221721	3300030885	Soil	QKRPPEQRGRGLIQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0075379_115494631	3300030946	Soil	LKVSHSSGSSTQKRPHEKRGRSLIQNESDLLDTDLLPIRTAVENPPDVCEAAPMAYAIVICFASYIGSSRVLELEHQREVSSVSGEVMLSP
Ga0075381_114032701	3300030970	Soil	MQNESDLLDTDLLPIRTAEEIPPAVGEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0073998_100284981	3300031023	Soil	EQRGRGLIQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSSVLELSTNRKSAPFPAR
Ga0170834_1100780341	3300031057	Forest Soil	MQNEADLLDTDLLPIRTTVENPPVVCEAAPMAYAIVICFASCIGSSSGLELSTNRKSAPFPAR
Ga0170824_1133736982	3300031231	Forest Soil	MRNESDLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPF
Ga0307469_102634941	3300031720	Hardwood Forest Soil	LKVSHSSGSSTQKKRPHEKRGRGLIQNEADLLDTVLLPIRTAVENPPTVCEAAPMAFAIVICFASCIGSSRVLEL
Ga0307478_101647723	3300031823	Hardwood Forest Soil	SGSSTQKRPHEKRGRGLMQTYESDLLDTDLLPIRTAVKSPFVCEAAPMAYAIVICFASCIGSSRVLELSTNRKSAPFPAR
Ga0307479_104411151	3300031962	Hardwood Forest Soil	LKVSHSSGSSTQKRPPEQRGRGLIQNEADLLDTDLLPIRTAEGIPPAVCEAAPMAYAIVICFASCI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F084660

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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