Basic Information | |
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IMG/M Taxon OID | 3300002026 Open in IMG/M |
GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0045862 | Gp0060466 | Ga0016711 |
Sample Name | Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 5k+ |
Sequencing Status | Permanent Draft |
Sequencing Center | University of Michigan |
Published? | N |
Use Policy | Open |
Dataset Contents | |
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Total Genome Size | 430304336 |
Sequencing Scaffolds | 24 |
Novel Protein Genes | 31 |
Associated Families | 22 |
Dataset Phylogeny | |
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Taxonomy Groups | Number of Scaffolds |
All Organisms → cellular organisms → Bacteria | 5 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila | 4 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 2 |
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 3 |
Not Available | 4 |
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 1 |
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae | 1 |
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 1 |
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes | 2 |
Ecosystem Assignment (GOLD) | |
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Name | Sinkhole Freshwater Microbial Communities From Lake Huron, Us |
Type | Environmental |
Taxonomy | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us |
Alternative Ecosystem Assignments | |
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Environment Ontology (ENVO) | freshwater lake biome → sinkhole → fresh water |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) |
Location Information | ||||||||
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Location | Middle Island Sinkhole, Lake Huron Michigan, USA | |||||||
Coordinates | Lat. (o) | 45.19843 | Long. (o) | -83.32721 | Alt. (m) | N/A | Depth (m) | 23 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001506 | Metagenome / Metatranscriptome | 681 | Y |
F009010 | Metagenome / Metatranscriptome | 324 | Y |
F018683 | Metagenome / Metatranscriptome | 233 | Y |
F020177 | Metagenome / Metatranscriptome | 225 | Y |
F021450 | Metagenome | 219 | N |
F022145 | Metagenome | 215 | Y |
F028047 | Metagenome | 193 | Y |
F034486 | Metagenome / Metatranscriptome | 174 | Y |
F054439 | Metagenome | 140 | Y |
F057876 | Metagenome / Metatranscriptome | 135 | Y |
F058545 | Metagenome / Metatranscriptome | 135 | Y |
F059119 | Metagenome / Metatranscriptome | 134 | Y |
F064355 | Metagenome / Metatranscriptome | 128 | Y |
F081567 | Metagenome / Metatranscriptome | 114 | Y |
F081921 | Metagenome / Metatranscriptome | 114 | Y |
F087946 | Metagenome | 110 | Y |
F092108 | Metagenome / Metatranscriptome | 107 | Y |
F093370 | Metagenome / Metatranscriptome | 106 | Y |
F095532 | Metagenome / Metatranscriptome | 105 | N |
F096161 | Metagenome | 105 | N |
F096680 | Metagenome / Metatranscriptome | 104 | Y |
F104554 | Metagenome | 100 | Y |
Scaffold | Taxonomy | Length | IMG/M Link |
---|---|---|---|
MIS_10000970 | All Organisms → cellular organisms → Bacteria | 42161 | Open in IMG/M |
MIS_10002140 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila | 21461 | Open in IMG/M |
MIS_10002822 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 20981 | Open in IMG/M |
MIS_10003771 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria | 16492 | Open in IMG/M |
MIS_10005856 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 19535 | Open in IMG/M |
MIS_10006139 | All Organisms → cellular organisms → Bacteria | 13099 | Open in IMG/M |
MIS_10006511 | Not Available | 12735 | Open in IMG/M |
MIS_10007163 | All Organisms → cellular organisms → Bacteria | 12083 | Open in IMG/M |
MIS_10008864 | All Organisms → cellular organisms → Bacteria | 10815 | Open in IMG/M |
MIS_10011302 | Not Available | 9512 | Open in IMG/M |
MIS_10011428 | Not Available | 18562 | Open in IMG/M |
MIS_10013072 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila | 8807 | Open in IMG/M |
MIS_10013673 | All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium | 8608 | Open in IMG/M |
MIS_10014106 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila | 10474 | Open in IMG/M |
MIS_10014989 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi | 8174 | Open in IMG/M |
MIS_10015784 | All Organisms → cellular organisms → Bacteria | 7945 | Open in IMG/M |
MIS_10016620 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 7706 | Open in IMG/M |
MIS_10021924 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae | 6570 | Open in IMG/M |
MIS_10022514 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes | 6469 | Open in IMG/M |
MIS_10024752 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria | 6121 | Open in IMG/M |
MIS_10026601 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila | 5862 | Open in IMG/M |
MIS_10027223 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes | 5786 | Open in IMG/M |
MIS_10028843 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes | 5592 | Open in IMG/M |
MIS_10029777 | Not Available | 5486 | Open in IMG/M |
Scaffold ID | Protein ID | Family | Sequence |
---|---|---|---|
MIS_10000970 | MIS_1000097031 | F081567 | MRVAIKATEEAIIRLLKAGHPLPGDVVDRELETRLPVFQSVEAVPVKTYGIEGLGRIVIARGRKDVWFVDIKRKDGKLSVKDGESFLDMRDKLQQRYPGQKVTGWLVTTADVDVKAKSVIAEKGCFATAGAAKR* |
MIS_10001411 | MIS_1000141118 | F028047 | MMEPEMKGVVFRNDWHLLGLKQIDSLFNELFSHVTIQPGIEIVNRLKILEVCSLEILEDRSRSTVYRIRQTDEVFQIFQPGGDLFRYTTEDYFKKEPSDELVKEYIKKAPVFKIEKVSEHRDVIHHLRPPKFRALFVDRTFDKVEWIDQPPEDISQIPKLMRKMGAFYASFYRK* |
MIS_10001793 | MIS_1000179315 | F028047 | MKIVKMASKGMIFRNDWHKLGVDTIKALFKENLDPVAILPGLEVVNRLKQLEVCTLEIMEDRSSSTVYRIRQTDEVFQIFQPEGKQFSYTTEDYYLQEPIDDIVREYSKKDPVFKIERLVNFRDVVHHLHTPKFRALFVDGTFEKVEWIDQPPEDISRVTKLMRKMGAFYTSYVK* |
MIS_10002140 | MIS_1000214017 | F096680 | METILPSVIFLSMVVVFGVDATRKRREFLKKHDRA* |
MIS_10002822 | MIS_1000282222 | F104554 | MTTYSEIESEYHRKSIIQEMDAIRLEEEAVKGRTLLDKSLALLGNLMISAGEKLRRRQHSMQEERSVKLVKVA* |
MIS_10003771 | MIS_1000377113 | F001506 | MNRILYESRCRCKEEISIIPKRKLSARSEGKPLQYPNEMMSKTFQIKYEKKLSSLARFILNSFRNKYIYYAIDDILYLLKSNPVERESLLALLYSPVLSLHNNLCINFFDIWIHEVYINETSKVNKFLNNEYQNLEQFTYITIKFLYKTRVPVKKPDSLW* |
MIS_10005856 | MIS_1000585621 | F087946 | MLSKQRIPDLIVIAVLGLLLVLLNYTGNIGIMSDYPFIFLLVMYFLGRAVTWYIINQHMDEGDGGKEQE* |
MIS_10006139 | MIS_1000613915 | F081921 | MNPMPQTEPQEVNVQERAVETLTDNSLPAAQVIEDQNDAAEQNSAPRFIP* |
MIS_10006511 | MIS_1000651121 | F057876 | MRHHGTRTIKVNKDKLIEQIRKNKENHIVEYDKAVVAYKEEALRQLNEQIKKVEEGSLIASLNLVTPINNAENYDKIIEMFEWEVDDVVSLEQQEFNEFVQDETEFAVQAKFSNAMYTLR |
MIS_10007163 | MIS_1000716310 | F059119 | MLEFIILVLTAQLLLSFFGQSIFPGVPHTGSFIYILSVLIVVLIMMKFLMLSM* |
MIS_10007163 | MIS_100071632 | F058545 | MKMKNVFAAASAGMILLLLAACNMPKPASAPMPTPTEVVMPATGVEYTFVTNKLLMPTTQEQTQEFALNVDGDTQNTTDNKFGTLLTLLTSAVRNIELQSTLDQAVDNGQLVSLHVIKADDALNDTSVSWSILQGQQTLTAPSFDGSDKFALDAVAPANLPIVGSLTNGHFSGGPGAAKVQMVLLGQPLTVDLIGMRLEVDVSAKGCVNGKLGGAVTVEEFSGKILPPIAEGLNLVIRSDATAATAILQAFDADGNGAITSQELENNPLLMIAVSPDVDMLDASGNFNPRQDGVNDSYSVGLGFTCVPATWELALVP* |
MIS_10007163 | MIS_100071639 | F064355 | MSMKNIFSIFNSKFLTHLRQLFTNEYPDSKSEVEKRKVAVENNLRWQDDGGPVVENTRPVEQAAENDPADPGGTAGNDHEKRR* |
MIS_10008864 | MIS_100088641 | F020177 | MNIDLDNTSWDRLRGYVTELRVDARWILRDNETDSPRGSLRIVSHPDLKPGYLRAIFTYMTSIRPKTKEEKLKTIEDYQMEISELEVYSIHDDIQTENLTHEAPYKELEKMFAVKVFE* |
MIS_10011302 | MIS_1001130212 | F018683 | MVKRFKQSQRFRVILGDVCFYATAKQIRYGVGDFMKCNAALQKALDSLEYMPNSVYKPVGAVGTWEGLTVQINVCNK* |
MIS_10011428 | MIS_1001142830 | F095532 | MNRQNVIVVIAPTLEVWGNFKKLCEAKGFDILPYHSLKSKPFPIFHNDWIIHKVPFL* |
MIS_10013072 | MIS_100130724 | F081921 | MNTLPQSEQKEIYLQERAGETITDDSLPAAQVIEDQKNNAEQNNTPRFIP* |
MIS_10013673 | MIS_100136733 | F054439 | MSHRTRGKTTIKQMAYARRIFGGQGKCKKQIALDVGYSPNTSNSVKSHIEDKPGFQMAMTALAVDSNNLALAAMYEFKQRGFKDFSNKDLVGALNAIGNAWAKFNAEPKVKEPTENSNKLRTVILQQIENQHQVVAPQTTQVVQIAPLDGALDF* |
MIS_10013673 | MIS_100136738 | F034486 | MEENEQSLKQKKIALAASEHAPVIIELMKDCMAQIPIVADTEWKTIVNAITLEVQGTMLRTMVDHLEGIRNGSLHEQK* |
MIS_10013673 | MIS_100136739 | F022145 | MDAREIKKKGYTVQIGYSKKAKEKKLMKFITKSGDSFEISAEEMSSMLIGGVNSNTLEATFVESDRINVVEVGRQIQCVLEKDFKKGEIININYTHPYPLEFALIEQAYKIAKIDMSIPAKVLTQEYIKKVKSQLKPEMTNFITKFYKSFKNLVLK* |
MIS_10014106 | MIS_100141068 | F104554 | VTTYPEIESELHRKSIMEEMDAIRLEEEAVKGKTLLDKNLALLGNLMVSTGEKLRQRYHSSQEAVSAKLVKKVA* |
MIS_10014989 | MIS_100149898 | F059119 | MFELIILVLTAQLLLSFFGQSAFPGVPHTGSFIYILSVLIVLLIIMKFLTDGI* |
MIS_10014989 | MIS_100149899 | F064355 | MSTKNKFSIFNSKFFKYLKQLFTNEYPDSKPDVEKRKVAVENNLRWQDDGGPVVENTRPIVQAAENDPTKPGDVTGNDPDKRR* |
MIS_10015784 | MIS_1001578410 | F093370 | MKQPIPRNGIGPLKVGNRVQIVPEWQDPGDDQYERFVIEAPDDCTRVRIQAHVPKLIFQPTEWIEADHLLLLPTDNQ* |
MIS_10016620 | MIS_100166202 | F087946 | MLSKQRIPDLIVILVLGLFLTLLNYTGTIGVVSDYPFIFMLIMYFVGRAVTWYVINKHFEEDEGE* |
MIS_10021924 | MIS_100219244 | F093370 | MCASSTGKTNKIDPMKQPIPRNSTEPLKVGDQVQIVPEWQDPGDDKYERFVIEAPTDCTSVRIRTVVPGLVFQPGEWIEADRLNLLP* |
MIS_10022514 | MIS_100225143 | F021450 | MKKAIFLLAVLLLFSIEIQAQVTNVLNNFYSVWVKPAIPIIGGLVLIVGALMNMGKVIHNESRDVKGFISGIVLYLAVYFCLVGIVAFIMAG* |
MIS_10024752 | MIS_100247525 | F009010 | MVDLPDFLYLLVNHPMLVLAPIVLFVALALWSRSNTAWLAAAAWNLYLIYELGMKAEEFCSGTACLKRTPLYAVYPLLAILSLVALVQVYVHLRDRRQRPGLS* |
MIS_10026601 | MIS_100266013 | F096680 | METILPSVIFLSMVVVFGVDATRKRRDFLKKRNRI* |
MIS_10027223 | MIS_100272236 | F096161 | GASLDGFSQLSASFSSEAGAVLTFLLTFCVKTKSKSGFGAESPTLNC* |
MIS_10028843 | MIS_100288431 | F096161 | FSQLSASFSNEAGAVLTFLLTFCVKTKSKSGFKAEAPVVSD* |
MIS_10029777 | MIS_100297779 | F092108 | MGILRISAKCSDLCWTEYTDAKGKKTESDGYVPSDIGIDEYGDYVVLDIDMKTGQIQNWKPVSDARVIKAQKAS* |
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