NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300002026

3300002026: Sinkhole freshwater microbial communities from Lake Huron, USA - Flux 5k+



Overview

Basic Information
IMG/M Taxon OID3300002026 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045862 | Gp0060466 | Ga0016711
Sample NameSinkhole freshwater microbial communities from Lake Huron, USA - Flux 5k+
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Michigan
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size430304336
Sequencing Scaffolds24
Novel Protein Genes31
Associated Families22

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes3
Not Available4
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium1
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSinkhole Freshwater Microbial Communities From Lake Huron, Us
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → sinkhole → fresh water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMiddle Island Sinkhole, Lake Huron Michigan, USA
CoordinatesLat. (o)45.19843Long. (o)-83.32721Alt. (m)N/ADepth (m)23
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001506Metagenome / Metatranscriptome681Y
F009010Metagenome / Metatranscriptome324Y
F018683Metagenome / Metatranscriptome233Y
F020177Metagenome / Metatranscriptome225Y
F021450Metagenome219N
F022145Metagenome215Y
F028047Metagenome193Y
F034486Metagenome / Metatranscriptome174Y
F054439Metagenome140Y
F057876Metagenome / Metatranscriptome135Y
F058545Metagenome / Metatranscriptome135Y
F059119Metagenome / Metatranscriptome134Y
F064355Metagenome / Metatranscriptome128Y
F081567Metagenome / Metatranscriptome114Y
F081921Metagenome / Metatranscriptome114Y
F087946Metagenome110Y
F092108Metagenome / Metatranscriptome107Y
F093370Metagenome / Metatranscriptome106Y
F095532Metagenome / Metatranscriptome105N
F096161Metagenome105N
F096680Metagenome / Metatranscriptome104Y
F104554Metagenome100Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
MIS_10000970All Organisms → cellular organisms → Bacteria42161Open in IMG/M
MIS_10002140All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila21461Open in IMG/M
MIS_10002822All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi20981Open in IMG/M
MIS_10003771All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria16492Open in IMG/M
MIS_10005856All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes19535Open in IMG/M
MIS_10006139All Organisms → cellular organisms → Bacteria13099Open in IMG/M
MIS_10006511Not Available12735Open in IMG/M
MIS_10007163All Organisms → cellular organisms → Bacteria12083Open in IMG/M
MIS_10008864All Organisms → cellular organisms → Bacteria10815Open in IMG/M
MIS_10011302Not Available9512Open in IMG/M
MIS_10011428Not Available18562Open in IMG/M
MIS_10013072All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila8807Open in IMG/M
MIS_10013673All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Dependentiae → unclassified Candidatus Dependentiae → Candidatus Dependentiae bacterium8608Open in IMG/M
MIS_10014106All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila10474Open in IMG/M
MIS_10014989All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi8174Open in IMG/M
MIS_10015784All Organisms → cellular organisms → Bacteria7945Open in IMG/M
MIS_10016620All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes7706Open in IMG/M
MIS_10021924All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae6570Open in IMG/M
MIS_10022514All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes6469Open in IMG/M
MIS_10024752All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria6121Open in IMG/M
MIS_10026601All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → Anaerolineaceae → Anaerolinea → Anaerolinea thermophila5862Open in IMG/M
MIS_10027223All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes5786Open in IMG/M
MIS_10028843All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Paludibacteraceae → Paludibacter → Paludibacter propionicigenes5592Open in IMG/M
MIS_10029777Not Available5486Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
MIS_10000970MIS_1000097031F081567MRVAIKATEEAIIRLLKAGHPLPGDVVDRELETRLPVFQSVEAVPVKTYGIEGLGRIVIARGRKDVWFVDIKRKDGKLSVKDGESFLDMRDKLQQRYPGQKVTGWLVTTADVDVKAKSVIAEKGCFATAGAAKR*
MIS_10001411MIS_1000141118F028047MMEPEMKGVVFRNDWHLLGLKQIDSLFNELFSHVTIQPGIEIVNRLKILEVCSLEILEDRSRSTVYRIRQTDEVFQIFQPGGDLFRYTTEDYFKKEPSDELVKEYIKKAPVFKIEKVSEHRDVIHHLRPPKFRALFVDRTFDKVEWIDQPPEDISQIPKLMRKMGAFYASFYRK*
MIS_10001793MIS_1000179315F028047MKIVKMASKGMIFRNDWHKLGVDTIKALFKENLDPVAILPGLEVVNRLKQLEVCTLEIMEDRSSSTVYRIRQTDEVFQIFQPEGKQFSYTTEDYYLQEPIDDIVREYSKKDPVFKIERLVNFRDVVHHLHTPKFRALFVDGTFEKVEWIDQPPEDISRVTKLMRKMGAFYTSYVK*
MIS_10002140MIS_1000214017F096680METILPSVIFLSMVVVFGVDATRKRREFLKKHDRA*
MIS_10002822MIS_1000282222F104554MTTYSEIESEYHRKSIIQEMDAIRLEEEAVKGRTLLDKSLALLGNLMISAGEKLRRRQHSMQEERSVKLVKVA*
MIS_10003771MIS_1000377113F001506MNRILYESRCRCKEEISIIPKRKLSARSEGKPLQYPNEMMSKTFQIKYEKKLSSLARFILNSFRNKYIYYAIDDILYLLKSNPVERESLLALLYSPVLSLHNNLCINFFDIWIHEVYINETSKVNKFLNNEYQNLEQFTYITIKFLYKTRVPVKKPDSLW*
MIS_10005856MIS_1000585621F087946MLSKQRIPDLIVIAVLGLLLVLLNYTGNIGIMSDYPFIFLLVMYFLGRAVTWYIINQHMDEGDGGKEQE*
MIS_10006139MIS_1000613915F081921MNPMPQTEPQEVNVQERAVETLTDNSLPAAQVIEDQNDAAEQNSAPRFIP*
MIS_10006511MIS_1000651121F057876MRHHGTRTIKVNKDKLIEQIRKNKENHIVEYDKAVVAYKEEALRQLNEQIKKVEEGSLIASLNLVTPINNAENYDKIIEMFEWEVDDVVSLEQQEFNEFVQDETEFAVQAKFSNAMYTLR
MIS_10007163MIS_1000716310F059119MLEFIILVLTAQLLLSFFGQSIFPGVPHTGSFIYILSVLIVVLIMMKFLMLSM*
MIS_10007163MIS_100071632F058545MKMKNVFAAASAGMILLLLAACNMPKPASAPMPTPTEVVMPATGVEYTFVTNKLLMPTTQEQTQEFALNVDGDTQNTTDNKFGTLLTLLTSAVRNIELQSTLDQAVDNGQLVSLHVIKADDALNDTSVSWSILQGQQTLTAPSFDGSDKFALDAVAPANLPIVGSLTNGHFSGGPGAAKVQMVLLGQPLTVDLIGMRLEVDVSAKGCVNGKLGGAVTVEEFSGKILPPIAEGLNLVIRSDATAATAILQAFDADGNGAITSQELENNPLLMIAVSPDVDMLDASGNFNPRQDGVNDSYSVGLGFTCVPATWELALVP*
MIS_10007163MIS_100071639F064355MSMKNIFSIFNSKFLTHLRQLFTNEYPDSKSEVEKRKVAVENNLRWQDDGGPVVENTRPVEQAAENDPADPGGTAGNDHEKRR*
MIS_10008864MIS_100088641F020177MNIDLDNTSWDRLRGYVTELRVDARWILRDNETDSPRGSLRIVSHPDLKPGYLRAIFTYMTSIRPKTKEEKLKTIEDYQMEISELEVYSIHDDIQTENLTHEAPYKELEKMFAVKVFE*
MIS_10011302MIS_1001130212F018683MVKRFKQSQRFRVILGDVCFYATAKQIRYGVGDFMKCNAALQKALDSLEYMPNSVYKPVGAVGTWEGLTVQINVCNK*
MIS_10011428MIS_1001142830F095532MNRQNVIVVIAPTLEVWGNFKKLCEAKGFDILPYHSLKSKPFPIFHNDWIIHKVPFL*
MIS_10013072MIS_100130724F081921MNTLPQSEQKEIYLQERAGETITDDSLPAAQVIEDQKNNAEQNNTPRFIP*
MIS_10013673MIS_100136733F054439MSHRTRGKTTIKQMAYARRIFGGQGKCKKQIALDVGYSPNTSNSVKSHIEDKPGFQMAMTALAVDSNNLALAAMYEFKQRGFKDFSNKDLVGALNAIGNAWAKFNAEPKVKEPTENSNKLRTVILQQIENQHQVVAPQTTQVVQIAPLDGALDF*
MIS_10013673MIS_100136738F034486MEENEQSLKQKKIALAASEHAPVIIELMKDCMAQIPIVADTEWKTIVNAITLEVQGTMLRTMVDHLEGIRNGSLHEQK*
MIS_10013673MIS_100136739F022145MDAREIKKKGYTVQIGYSKKAKEKKLMKFITKSGDSFEISAEEMSSMLIGGVNSNTLEATFVESDRINVVEVGRQIQCVLEKDFKKGEIININYTHPYPLEFALIEQAYKIAKIDMSIPAKVLTQEYIKKVKSQLKPEMTNFITKFYKSFKNLVLK*
MIS_10014106MIS_100141068F104554VTTYPEIESELHRKSIMEEMDAIRLEEEAVKGKTLLDKNLALLGNLMVSTGEKLRQRYHSSQEAVSAKLVKKVA*
MIS_10014989MIS_100149898F059119MFELIILVLTAQLLLSFFGQSAFPGVPHTGSFIYILSVLIVLLIIMKFLTDGI*
MIS_10014989MIS_100149899F064355MSTKNKFSIFNSKFFKYLKQLFTNEYPDSKPDVEKRKVAVENNLRWQDDGGPVVENTRPIVQAAENDPTKPGDVTGNDPDKRR*
MIS_10015784MIS_1001578410F093370MKQPIPRNGIGPLKVGNRVQIVPEWQDPGDDQYERFVIEAPDDCTRVRIQAHVPKLIFQPTEWIEADHLLLLPTDNQ*
MIS_10016620MIS_100166202F087946MLSKQRIPDLIVILVLGLFLTLLNYTGTIGVVSDYPFIFMLIMYFVGRAVTWYVINKHFEEDEGE*
MIS_10021924MIS_100219244F093370MCASSTGKTNKIDPMKQPIPRNSTEPLKVGDQVQIVPEWQDPGDDKYERFVIEAPTDCTSVRIRTVVPGLVFQPGEWIEADRLNLLP*
MIS_10022514MIS_100225143F021450MKKAIFLLAVLLLFSIEIQAQVTNVLNNFYSVWVKPAIPIIGGLVLIVGALMNMGKVIHNESRDVKGFISGIVLYLAVYFCLVGIVAFIMAG*
MIS_10024752MIS_100247525F009010MVDLPDFLYLLVNHPMLVLAPIVLFVALALWSRSNTAWLAAAAWNLYLIYELGMKAEEFCSGTACLKRTPLYAVYPLLAILSLVALVQVYVHLRDRRQRPGLS*
MIS_10026601MIS_100266013F096680METILPSVIFLSMVVVFGVDATRKRRDFLKKRNRI*
MIS_10027223MIS_100272236F096161GASLDGFSQLSASFSSEAGAVLTFLLTFCVKTKSKSGFGAESPTLNC*
MIS_10028843MIS_100288431F096161FSQLSASFSNEAGAVLTFLLTFCVKTKSKSGFKAEAPVVSD*
MIS_10029777MIS_100297779F092108MGILRISAKCSDLCWTEYTDAKGKKTESDGYVPSDIGIDEYGDYVVLDIDMKTGQIQNWKPVSDARVIKAQKAS*
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