NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001765

3300001765: Sinkhole freshwater microbial communities from Lake Huron, USA - combined 2007-2012



Overview

Basic Information
IMG/M Taxon OID3300001765 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045862 | Gp0056367 | Ga0012997
Sample NameSinkhole freshwater microbial communities from Lake Huron, USA - combined 2007-2012
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Michigan
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size123496144
Sequencing Scaffolds11
Novel Protein Genes12
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium1
Not Available3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameSinkhole Freshwater Microbial Communities From Lake Huron, Us
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Sinkhole Freshwater → Sinkhole Freshwater Microbial Communities From Lake Huron, Us

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater lake biome → sinkhole → fresh water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationMiddle Island Sinkhole, Lake Huron Michigan, USA
CoordinatesLat. (o)45.19843Long. (o)-83.32721Alt. (m)N/ADepth (m)23
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011397Metagenome / Metatranscriptome291Y
F022996Metagenome212Y
F030615Metagenome185Y
F044934Metagenome / Metatranscriptome153Y
F057876Metagenome / Metatranscriptome135Y
F057919Metagenome / Metatranscriptome135Y
F089552Metagenome109Y
F092108Metagenome / Metatranscriptome107Y
F096680Metagenome / Metatranscriptome104Y
F103256Metagenome101Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
MIS_1000127All Organisms → cellular organisms → Bacteria42586Open in IMG/M
MIS_1000445All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea38030Open in IMG/M
MIS_1000465All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea → Peniculida → Parameciidae → Paramecium38244Open in IMG/M
MIS_1001013Not Available91901Open in IMG/M
MIS_1001106Not Available62208Open in IMG/M
MIS_1001159All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes35675Open in IMG/M
MIS_1001238All Organisms → cellular organisms → Bacteria72309Open in IMG/M
MIS_1001318All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Oligohymenophorea34026Open in IMG/M
MIS_1001704Not Available25707Open in IMG/M
MIS_1002039All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes25764Open in IMG/M
MIS_1005634All Organisms → cellular organisms → Bacteria5216Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
MIS_1000127MIS_100012714F096680MQTILPSVIFLSMVIIFGVDATRKRRAFLKKHNHN*
MIS_1000445MIS_100044533F057919MHEIFSLFGFFTFLTIAVQILSGVMLSFSLVPEPMLIPLVRDEEDLEDLYTDDFF*
MIS_1000465MIS_100046555F044934MKYSGFGAQDVLLVAVVLAGISTTISFTNLLITRRTLVAPGLRNRRVLIPFITISLLLTLRLLAIVTPILGAAVLMSLMDRH*
MIS_1001013MIS_100101381F092108MGILRISAKCSDLCWTEYTDAKGNKTESDGYVPEGIGISSDGDCGDYVSLDIDMQTGQIQNWKPVSDARVIKAQKSA*
MIS_1001013MIS_10010139F011397MKDFELLKRTYPVSHYERFCDGFDFIRKNSSEEERLEWGINLNDLQRVIKIGEKYIYQVAKEGKEFKTMCLCFKNYEIIRKNIFKLDDE*
MIS_1001106MIS_100110625F103256MDYKKGQLDEILFMVKRGFSYSDVLMMPIHTRRYYVQYMIELENK*
MIS_1001159MIS_10011594F030615MSKKKFRIISYFKNDIAFYETRVKTWLGWVSFTVFYKTEIVHILSEPSVHKSMAYERIKQYCITNGYNEKDIEITEINTSKPKRWILFQRIYSF*
MIS_1001238MIS_100123819F057876MRIRGNRETKVDKANLIEQIKLNKKNHVREYEKAILAYKEEALNQLSKEFKRVENGALDAKLDLITPINNAKNYDKIIEMFEWEVEDYVVLTQAEFNEYVQDETEFARQAKFSNTFYSNSI*
MIS_1001318MIS_100131824F057919MHEIFSLFGFFTFLTIAIQLLSGTMLSFSLVPEPMLIPLIREEEDLEDLYTDDFF*
MIS_1001704MIS_100170421F022996METIEKIDILKIKSDIKEMVELQKFYKNQRKTVKLVGERKLQASDARNKHQSNRENLRAMYAAYGIARGKSFSQIERRYSEENHPLLQYQWKIDKIMEQYKIEVKVESDENRAIA*
MIS_1002039MIS_10020392F030615MSKKKFRIISYIKNDIAFYETRVKTWLGWVSFTVFYKTEILHILSEPSVHKSMAYERIKQYCITNGYNEKDIEITEINTSKPKRWIFFQRIYSF*
MIS_1005634MIS_10056348F089552VNREPTRESERARIEKSFDVFGLSEAHRALILEALDSDAWDWFEDCDGCTAVNELHWPTKYFPPCLRHDFDWATGNGGLTGSKNFYDLQRAYGVPKWRSGLRAGVVTAVWYAWRRWVK*
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