NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 3300001566

3300001566: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-35cm)- 6 week illumina



Overview

Basic Information
IMG/M Taxon OID3300001566 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0083722 | Gp0055236 | Ga0012498
Sample NamePermafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-35cm)- 6 week illumina
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Tennessee
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size162888768
Sequencing Scaffolds22
Novel Protein Genes24
Associated Families24

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available2
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1
All Organisms → cellular organisms → Bacteria5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Proteobacteria1
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePermafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → active permafrost layer → permafrost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)N/ADepth (m)N/A
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001539Metagenome / Metatranscriptome674Y
F002821Metagenome / Metatranscriptome528Y
F003254Metagenome / Metatranscriptome497Y
F003771Metagenome / Metatranscriptome469Y
F004294Metagenome / Metatranscriptome445Y
F004616Metagenome / Metatranscriptome431Y
F006205Metagenome / Metatranscriptome379Y
F008857Metagenome / Metatranscriptome327Y
F014456Metagenome / Metatranscriptome263Y
F014596Metagenome / Metatranscriptome261Y
F015992Metagenome / Metatranscriptome250Y
F018061Metagenome / Metatranscriptome237Y
F019847Metagenome / Metatranscriptome227Y
F029292Metagenome189N
F046960Metagenome150Y
F052277Metagenome143Y
F064774Metagenome128Y
F065867Metagenome / Metatranscriptome127Y
F075472Metagenome / Metatranscriptome119Y
F078325Metagenome / Metatranscriptome116N
F080561Metagenome115Y
F084052Metagenome112Y
F087550Metagenome110Y
F097442Metagenome104N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
A2135W6_1004116Not Available503Open in IMG/M
A2135W6_1005200All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans596Open in IMG/M
A2135W6_1008136All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1192Open in IMG/M
A2135W6_1009561All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium841Open in IMG/M
A2135W6_1017916All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium892Open in IMG/M
A2135W6_1036899All Organisms → cellular organisms → Bacteria → Terrabacteria group728Open in IMG/M
A2135W6_1038161Not Available815Open in IMG/M
A2135W6_1045312All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria503Open in IMG/M
A2135W6_1056886All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium635Open in IMG/M
A2135W6_1069019All Organisms → cellular organisms → Bacteria570Open in IMG/M
A2135W6_1073790All Organisms → cellular organisms → Bacteria865Open in IMG/M
A2135W6_1087384All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium529Open in IMG/M
A2135W6_1102529All Organisms → cellular organisms → Bacteria510Open in IMG/M
A2135W6_1107445All Organisms → cellular organisms → Bacteria591Open in IMG/M
A2135W6_1113824All Organisms → cellular organisms → Bacteria → Proteobacteria512Open in IMG/M
A2135W6_1181769All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium534Open in IMG/M
A2135W6_1188108All Organisms → cellular organisms → Bacteria → Terrabacteria group507Open in IMG/M
A2135W6_1220048All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium547Open in IMG/M
A2135W6_1270681All Organisms → cellular organisms → Bacteria536Open in IMG/M
A2135W6_1312801All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium506Open in IMG/M
A2135W6_1316707All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales669Open in IMG/M
A2135W6_1352220All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria500Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
A2135W6_1004116A2135W6_10041161F004616ILPGVPHVSRPVTTARTINPAQLCAHNLDAILAAVSLPLFLLTGLPIDGWFWATALWAVNRYAQAAIERRAVRMGALRGVGTMGASMLLRPWIGMLVLFLITRNDKTLAVSSVLLFLLLFTVDLVTRIVTHRNIGRGMGGTA*
A2135W6_1005200A2135W6_10052002F064774VITVESIGELLAKLDLIPSVTMVEVAPVDLAGFDELCPEMGVSQ*
A2135W6_1008136A2135W6_10081362F002821MSHTRISRARRSVQMLAIASGLLAVGCLRSTAPQPSAIQLNGTWKYTGVQTQPVRENLAGTLTISRESGASFQGQLILVATNEQSGQPTSLNGLVSGTESDGNVIDFDADLETVRRHVGQIVADTITGTWIGSASNGIMSSGTFRVERETQ*
A2135W6_1009561A2135W6_10095611F015992MTTPTPLPASETYSTELLPRDTFRTLVAIAIVLLTIGGWIYVMMIPVDRWALSAQTRLWWIEQITGFVLALVCIAIALRKRAFLTLAFWLTIYSMIFDIVRWYFEFKEGQPTIPIALLLYALFIWRLQLARRTVAAEGQIVAV*
A2135W6_1017916A2135W6_10179162F087550MERSGSKGTLVHFRCTKAAHARPPATRSDTLTLVEGLWAYCPFDIRAGDHDWVPTGGVTMESLRNEAGDAGLFGKPAEEDA*
A2135W6_1036899A2135W6_10368992F084052GVLLTPWQLGTFGTVAAVFALVAAGLVFVQLRFRARDDSLGLSALVLGGSLYVVFIAYVVRSVVAP*
A2135W6_1038161A2135W6_10381612F014456MAARAYVADIAGGTATVTVQIQATQTLREMALSWVNAAAGKIELSLSSTSQIGTAQPDSNVLARASCSAGANQATQRFTLSQPVKAFQSIYIHCTGAGNLGTAVLR*
A2135W6_1045312A2135W6_10453122F003771IMGQRFEGLYLPPPSRPDKPLVVKTLIVPTHEYAEGRKVILMTGRSIYTVAMRQLVEQRSDWSWVAIQVIEKQVRA*
A2135W6_1056886A2135W6_10568861F018061RDQYYETTPASADTRVDNFVRRNFDCGSISKRDSHFGEDRWISSVCEANLKGTTDWKAFLSEVEAHALPQTTATTDSVDQGEDKNWGITVERRSGVNYGVSYYHTALTFGAPEPGRGPKLQDMVNALATTVRRESKVAQH*
A2135W6_1069019A2135W6_10690192F001539VVTLHVQPRPTPAERAEGELEISVDERLAGFAETMEDWIAPRQAWELTLREGHEFGRANNVEARVLCVEGEQTSSLVFRLEQLDEATDTGDELILRFEEQDGISKLARLTSNGLDVELFHILTFT*
A2135W6_1073790A2135W6_10737902F046960MERKVLWSVLVIGAALVIAPLALSLPSKASAGEQMLNSFQPIMQPAQVRKTADYYYNVFTPLGKVVPAMSAGNIERFQGYLKGFGGVQADAAKLVPMLAQALHMTPAQVQTLMRTQLPSMAAMVQNLPAMRRDFTGLIGLMRQNVGIFGQVPAGLQHYLPLVTTCLLYTSDAADD
A2135W6_1087384A2135W6_10873842F014596IYPYTVGREDCKVLPRSFKSLAEAEAYFAKQDKGALERGEFYLDGPEQDNAASDRTVGGVRAAPALA*
A2135W6_1102529A2135W6_11025292F097442NYDELLGMFENLRSLESQLLGIFVSQETSATRYVFTK*
A2135W6_1107445A2135W6_11074451F006205DKLREELTNAGKRLADLAEKGKSELPAAAKRIDEEYQRLQKLLDAAVDKLRHK*
A2135W6_1107445A2135W6_11074452F004294MECWLITSRAEVMRLEFGDEPPPEICLPDKPLSDIQDDASRRFIQDAPYIIYRRYHLAQESWRLGIVYSIAPPTVGDIQILSAYRAGHEARPHLV*
A2135W6_1113824A2135W6_11138241F075472MNQVVRLSLVDRADAELSIVAQCRLLKVARSSLYWRSATVSEDDLR
A2135W6_1181769A2135W6_11817691F003254VSESGYHLRIKKVDKDRALVDFLDPRAAPVQRPYMGGAPSLKMFAHYDSNGIFEVDLWQEGKGFILDLTHEYDYELDPERREALVPALSRNERDHFLDACYSLFGPLDHFVRRKAENRRLYAKQPPHRAVDGLRKPEHPH*
A2135W6_1188108A2135W6_11881082F029292EWRDFGYLFIRARWTMDGAKTLTEAAQRFRDRAETLEQLARAGFELDQPADNGFAVAVRPGEESPMRLVEEDE*
A2135W6_1191235A2135W6_11912351F019847MIQSVLLVVGTALATWMIMRWVRWTPRVLNRQEQEIGSAKNIGTRLDSARDRASLAEVERNRLALAKAVKAALWVTDARLNFAVPDLLKLAQLWMGQSKVRGKTWKPPEGVTQIEG
A2135W6_1220048A2135W6_12200482F078325FGQTSRALGNPDEARLAWREAAESFEDVGARDEAAEIKALIASLPAS*
A2135W6_1270681A2135W6_12706811F080561FHPTPSSGSEKLCSHSSDEVRTDAAIVPRHTIGRGSKTDLIEDLDGVIEPRPSWPARWLLPAAGGVLLAVVLATSFLRVQPARVNVLDAAPPATGIKAIELPRTLATLETRLQFSGVTGLTSMEMSEGFRDTYRLADGRLVIVIEYPDPADGALLAPVARVQVPVRGTNGAIFDTLQA
A2135W6_1312801A2135W6_13128012F052277QPSLLQLSGAWKYTGVQTVPVRATLTGTLTVSRESGTSFQGRLDLISANEQTGQSSVLGGLVSGSESGTDVIDFDADMDVIRRHVGQIVADTITGTWIGSAPDGTMSSGTFRVEREP*
A2135W6_1316707A2135W6_13167071F008857VRNVEQVAGGPWDRAGVDRETWYVVRMMAVAFRETVRLPIDPTERNEALPADHQRLGEYADRLVSAVEDGDPE
A2135W6_1352220A2135W6_13522202F065867MMEVGTNAGLSSNGRIMATKADFTEQEWESFQKGVTGAGLLVSLSDRSFFDTFKEAGALGKHIAQARQSNSSELVREVASIHGTGFGLTNSPDTVETETLAALR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.