NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001424

3300001424: Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012



Overview

Basic Information
IMG/M Taxon OID3300001424 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0084162 | Gp0056265 | Ga0003484
Sample NameArctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size33220061
Sequencing Scaffolds22
Novel Protein Genes24
Associated Families19

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC286502
Not Available13
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2
All Organisms → cellular organisms → Bacteria2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameArctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil → Arctic Peat Soil Microbial Communities From The Barrow Environmental Observatory Site, Barrow, Alaska, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)polar biome → polar → peat soil
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationBarrow Environmental Observatory site, Barrow, Alaska
CoordinatesLat. (o)71.2999Long. (o)-156.61Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000926Metagenome / Metatranscriptome832Y
F012088Metagenome / Metatranscriptome284Y
F013110Metagenome / Metatranscriptome274Y
F014092Metagenome / Metatranscriptome266Y
F017249Metagenome242Y
F025880Metagenome / Metatranscriptome200Y
F035555Metagenome / Metatranscriptome172Y
F050023Metagenome / Metatranscriptome146Y
F051569Metagenome144Y
F053674Metagenome141Y
F062277Metagenome131Y
F077975Metagenome117Y
F079367Metagenome116Y
F081920Metagenome114N
F086336Metagenome111Y
F096256Metagenome105N
F098276Metagenome104N
F100041Metagenome103N
F104110Metagenome / Metatranscriptome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
JGI20198J14950_1000423All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC286505498Open in IMG/M
JGI20198J14950_1000534Not Available4770Open in IMG/M
JGI20198J14950_1001156Not Available2767Open in IMG/M
JGI20198J14950_1001213All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2685Open in IMG/M
JGI20198J14950_1001294Not Available2543Open in IMG/M
JGI20198J14950_1001302All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia2538Open in IMG/M
JGI20198J14950_1002024Not Available1782Open in IMG/M
JGI20198J14950_1002289All Organisms → cellular organisms → Bacteria1607Open in IMG/M
JGI20198J14950_1002964Not Available1300Open in IMG/M
JGI20198J14950_1003014All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1281Open in IMG/M
JGI20198J14950_1003227All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Nakamurellales → Nakamurellaceae → Nakamurella → unclassified Nakamurella → Nakamurella sp. PAMC286501207Open in IMG/M
JGI20198J14950_1003274Not Available1191Open in IMG/M
JGI20198J14950_1005049Not Available850Open in IMG/M
JGI20198J14950_1005051All Organisms → cellular organisms → Bacteria850Open in IMG/M
JGI20198J14950_1005718Not Available778Open in IMG/M
JGI20198J14950_1005728Not Available778Open in IMG/M
JGI20198J14950_1007115All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia674Open in IMG/M
JGI20198J14950_1007476All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes652Open in IMG/M
JGI20198J14950_1008205Not Available618Open in IMG/M
JGI20198J14950_1009650Not Available561Open in IMG/M
JGI20198J14950_1011078Not Available518Open in IMG/M
JGI20198J14950_1011225Not Available514Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
JGI20198J14950_1000423JGI20198J14950_10004237F051569MTIITESAALTGRLSVNTTYTAAPLDQVNTWVSQWGTSLQVLGGTILAICMVLVGIKLGAKSVASNGASTGHREAVGAIFGLVIAGVLIGAALIIVPLFVGVGSNSGTTPPAAPAPAATAGG*
JGI20198J14950_1000534JGI20198J14950_10005347F079367MKTPFKRGGASGDKFRHKDDIAWWMSRYELLCTTEAEDVVRKAMAKLNDAVALRDQALDLVAQLDQDISEAEXEITRLGGAAFIKKSEPMIEELKVYFDNLYESLKRARPEEVTLAARKGRKLE*
JGI20198J14950_1001010JGI20198J14950_10010102F086336VMVGRADGARTCSRVLSELAQVTVWVEWERPAWRVYWTDGPTREALMGY*
JGI20198J14950_1001156JGI20198J14950_10011563F098276VTGGESTEDQLNELRARIIEINELTQYNLLTGEALGLIRGMLIDLIEASDADPDDYVDDLDRLDQIANQFP*
JGI20198J14950_1001213JGI20198J14950_10012136F081920LTICVGDGCANRFSDEAGWEGRCPECMALWDDHAAGLHDVPVDGCLLCR*
JGI20198J14950_1001294JGI20198J14950_10012944F100041MTLGDHADAYRQVKEAWRDATEARQITMLDDLQDLLDGIGFSDDEEYELRGRVERLITDIEYELGIDESEP*
JGI20198J14950_1001302JGI20198J14950_10013026F050023MRRWSGEAFVRVTAVRTRYEHIAAGWRRATGERRAGLLGELELLALQLPAVVQPEDPDRAEIXALRAAIR*
JGI20198J14950_1001804JGI20198J14950_10018043F104110MYLGKDVTTEDSMELGKVSDVSISSSGEVYYLVEKGKDPNIRYYFTQEDVLASNERVVTRSVGEFTDDIAKRSHFLCALYGVEVRDTTNNRVGVLDNFVASPQGALVVIEDAKGXALVGRYRDLDLTRLSKFAILKQLPAQDXFDEYLKDINRDTLLTKGISCDLSSVAKDEGLLSRIRKKLSQSEEDRIITDQALID*
JGI20198J14950_1002024JGI20198J14950_10020244F012088MITATADAPAWLRRSDQAVTWARTMLTPRRAVVIDCETTDLPGGVTGNDGYQNLRNSTRARLFR*
JGI20198J14950_1002289JGI20198J14950_10022892F017249MSRRARDLLAGDLGAHRDLPVDPDPEPEATAPERPPVVEPAASDYKPADAAAAWNRRRRELQDLAGIIEMLSDVERADELNRRAAELADEWL*
JGI20198J14950_1002964JGI20198J14950_10029643F077975LGDAAAAADSGVICQAESVEIGIGQDGADPFDATFLLAGTDPQGREVAVWIRLTPTTINDLTDQLTQVLVAQQQILGGNGFHHTDDVDTDRTAADEDAQDTGGGRAKRFFDPLGIRHLKDRSPRTTVMLGVAIASLMLLAFVLQQIRR*
JGI20198J14950_1003014JGI20198J14950_10030141F062277MTEPGAVLDAAHTAIADLAAVLVAVRAGLGCECVRAGSHLEMGEIDLLSARDAVEKARLEIDLAGPAVADVRVAVPLSVGWIVLRSTAPEGIPVTGGAEVRSRPPGRRPAGTRRPRSPGHGQGELFSVHDVTSCTLQLA*
JGI20198J14950_1003227JGI20198J14950_10032273F025880MDHVTIEIGLGRFEAFTIIGARHDSSVQESVAGALGWLSGRFIASVMSTEVEVRNCTAAIFDVDAEEVMVQWHGSSDELADLLDRLAR*
JGI20198J14950_1003274JGI20198J14950_10032742F096256MASRKLESMLVTAMIATVLVSGCLSSLPLGSSPTATPQDLSVSYDASFVLSGWHAISKFTQIKPKTYVGAYADAKGQKWNFTVELFSAENNSYGRYFELMKKRSDEGYIKTTESKIALGTGQTVFGRIDEKWYGYKASDSANPALYALFFGYDETAESWVVATAASGATIITQTTTALS*
JGI20198J14950_1005049JGI20198J14950_10050492F050023LLSFRQSVVKVTAVRIRYEHIAAGWRRATAERRAGLLGELELLALQLPEVQSPDDPDRAEVVALRAAIRELITEITIGLADPT*
JGI20198J14950_1005051JGI20198J14950_10050512F000926MARFSAQEPTGAAVQQLEVLVRTAVFKSANALVGFLLQQAADSLDATYQAQPGEHWKGRETLQLQGMFGAFPLERDYYYHPGKKQGHYPADAALGLEVAYTPALARLLCLEGADEMGYEKAQQHLAETGGIDV
JGI20198J14950_1005718JGI20198J14950_10057183F050023VKVTAVRIRYEHIAAGWRRATGERRAGLLGELELLAFQLPPVVQPDDPDRAEVIALRAAISQLITEITIGLADPPLSCAD*
JGI20198J14950_1005728JGI20198J14950_10057281F014092MKKVLFVFVLIMAVLVVNAQETKTSVTKEKPLRTVVLVADLQKTITDNIAKDYVGYTIKEATSVTENNIVTFEVVIVKGTTTETLVYDKDGAFIKKLPPAPKIE*
JGI20198J14950_1007115JGI20198J14950_10071152F035555VHPMRSQLAFDLDDAAPAPPPVIGRPEDLPDRDREAAVAKLASLIARYHAAEVSADDHQ*
JGI20198J14950_1007476JGI20198J14950_10074761F014092MKKVLVVLVLVMAVLAVNAQTIKPTTTKEAPVRTTVLVADLQKTITDNIAKDYVGYTIKEAAKVTVNSIVTYEVVVVKETMTETLVY
JGI20198J14950_1008205JGI20198J14950_10082052F013110MSESRKDVLLKAIEAEVGGASVDPATLFTDDVVGWSPITTVSGLTDLADLAAGHETT
JGI20198J14950_1009650JGI20198J14950_10096501F081920MSVVLEELTICVGDGCANRFPDEAGWEGRXPECMALWDDHAAGQHDPPVDGC
JGI20198J14950_1011078JGI20198J14950_10110781F053674MKKVLFVLVLIMAVLVVNAQTTKTTVSKAQSTRTTVKVADLQKAITDNIAKDYVGFTIKEATS
JGI20198J14950_1011225JGI20198J14950_10112251F081920MSVVLEELTVCVGDGCANRFPDEDGWEGRCPECLALWDDHAAGQHDPPVDGCLLCR*
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