Metagenome / Metatranscriptome Family F035555

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F035555
Family Type	Metagenome / Metatranscriptome
Number of Sequences	172
Average Sequence Length	59 residues
Representative Sequence	VHPMSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Number of Associated Samples	125
Number of Associated Scaffolds	172

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.36 %
% of genes near scaffold ends (potentially truncated)	34.88 %
% of genes from short scaffolds (< 2000 bps)	84.88 %
Associated GOLD sequencing projects	114
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.837 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen (31.395 % of family members)
Environment Ontology (ENVO)	Unclassified (26.163 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.953 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.89% β-sheet: 0.00% Coil/Unstructured: 70.11%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 172 Family Scaffolds
PF00239	Resolvase	36.05
PF07508	Recombinase	22.67
PF00078	RVT_1	2.91
PF08388	GIIM	2.33
PF01548	DEDD_Tnp_IS110	0.58
PF13565	HTH_32	0.58
PF13561	adh_short_C2	0.58
PF13655	RVT_N	0.58

COG ID	Name	Functional Category	% Frequency in 172 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	58.72
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	36.05
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.58

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.84 %
Unclassified	root	N/A	26.16 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.84 %
Unclassified	root	N/A	26.16 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.84 %
Unclassified	root	N/A	26.16 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	38.37 %
Unclassified	root	N/A	26.16 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.58 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	38.37 %
Unclassified	root	N/A	26.16 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.58 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	31.40 %
Unclassified	root	N/A	26.16 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	1.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.16 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	25.00 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.16 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	1.74 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.58 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.16 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	25.00 %
unclassified Pyrinomonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae	1.74 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.58 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.58 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.16 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	25.00 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.74 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.58 %
Spongiactinospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Spongiactinospora	0.58 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.16 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	25.00 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.74 %
unclassified Nocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → unclassified Nocardia	0.58 %
Spongiactinospora rosea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Spongiactinospora → Spongiactinospora rosea	0.58 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.58 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.16 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	25.00 %
Pyrinomonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	1.74 %
Nocardia sp. NRRL WC-3656	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → unclassified Nocardia → Nocardia sp. NRRL WC-3656	0.58 %
Spongiactinospora rosea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Spongiactinospora → Spongiactinospora rosea	0.58 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.58 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.58 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908029\|A2_v1_NODE_42001_len_5560_cov_13_400720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5610	Open in IMG/M
3300000956\|JGI10216J12902_106376132	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300001399\|JGI20178J14841_100011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2876	Open in IMG/M
3300001399\|JGI20178J14841_100090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1766	Open in IMG/M
3300001400\|JGI20183J14883_104540	Not Available	617	Open in IMG/M
3300001404\|JGI20181J14860_1011817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	693	Open in IMG/M
3300001404\|JGI20181J14860_1014342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	612	Open in IMG/M
3300001404\|JGI20181J14860_1015971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	572	Open in IMG/M
3300001404\|JGI20181J14860_1017005	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300001404\|JGI20181J14860_1018360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	526	Open in IMG/M
3300001411\|JGI20182J14882_100044	Not Available	2522	Open in IMG/M
3300001415\|JGI20184J14884_100158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2610	Open in IMG/M
3300001417\|JGI20196J14858_1012624	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300001424\|JGI20198J14950_1007115	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	674	Open in IMG/M
3300001427\|JGI20200J14955_1002475	All Organisms → cellular organisms → Bacteria → Proteobacteria	2955	Open in IMG/M
3300001427\|JGI20200J14955_1010885	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	946	Open in IMG/M
3300001428\|JGI20201J14949_1024068	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300001429\|JGI20202J14951_1016470	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300001429\|JGI20202J14951_1017376	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300002071\|JGIcombinedJ21915_10057383	Not Available	1673	Open in IMG/M
3300002162\|JGI24139J26690_1004896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2567	Open in IMG/M
3300002347\|JGIcombinedJ26865_1003203	Not Available	2854	Open in IMG/M
3300002538\|JGI24132J36420_10055100	Not Available	1237	Open in IMG/M
3300002549\|JGI24130J36418_10015564	Not Available	2382	Open in IMG/M
3300003369\|JGI24140J50213_10063946	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300003369\|JGI24140J50213_10090192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1028	Open in IMG/M
3300003369\|JGI24140J50213_10103136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	944	Open in IMG/M
3300003369\|JGI24140J50213_10107633	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	918	Open in IMG/M
3300003369\|JGI24140J50213_10119388	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300005334\|Ga0068869_100501854	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300005338\|Ga0068868_100200403	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1664	Open in IMG/M
3300005347\|Ga0070668_101430610	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300005354\|Ga0070675_100850267	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300005355\|Ga0070671_101787006	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	546	Open in IMG/M
3300005364\|Ga0070673_101098745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	743	Open in IMG/M
3300005437\|Ga0070710_10727420	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300006057\|Ga0075026_100717972	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300006572\|Ga0074051_11541425	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300006573\|Ga0074055_10459465	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300006581\|Ga0074048_13170973	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300006605\|Ga0074057_12050288	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300006640\|Ga0075527_10102842	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300006755\|Ga0079222_11457579	Not Available	638	Open in IMG/M
3300006795\|Ga0075520_1025225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2959	Open in IMG/M
3300009148\|Ga0105243_10358560	Not Available	1341	Open in IMG/M
3300009177\|Ga0105248_12424118	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300010400\|Ga0134122_11039800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	806	Open in IMG/M
3300012668\|Ga0157216_10449458	Not Available	561	Open in IMG/M
3300012951\|Ga0164300_10574012	Not Available	660	Open in IMG/M
3300012955\|Ga0164298_10933993	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300012958\|Ga0164299_10647379	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	730	Open in IMG/M
3300012958\|Ga0164299_10795415	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300012958\|Ga0164299_11223568	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300012985\|Ga0164308_10268102	Not Available	1340	Open in IMG/M
3300012985\|Ga0164308_11693599	Not Available	586	Open in IMG/M
3300012988\|Ga0164306_11573409	Not Available	566	Open in IMG/M
3300013296\|Ga0157374_10040810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4275	Open in IMG/M
3300013308\|Ga0157375_11632348	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300014490\|Ga0182010_10015518	All Organisms → cellular organisms → Bacteria	3439	Open in IMG/M
3300014498\|Ga0182019_10077658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1985	Open in IMG/M
3300014498\|Ga0182019_10813275	All Organisms → cellular organisms → Bacteria	669	Open in IMG/M
3300014498\|Ga0182019_10938935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	625	Open in IMG/M
3300015075\|Ga0167636_1024852	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300015090\|Ga0167634_1003202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2152	Open in IMG/M
3300015371\|Ga0132258_12948119	Not Available	1181	Open in IMG/M
3300015373\|Ga0132257_102831169	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300017965\|Ga0190266_11009409	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300018070\|Ga0184631_10369463	Not Available	593	Open in IMG/M
3300018083\|Ga0184628_10091685	Not Available	1558	Open in IMG/M
3300018083\|Ga0184628_10243235	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300018429\|Ga0190272_13319501	Not Available	502	Open in IMG/M
3300018432\|Ga0190275_10077349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2875	Open in IMG/M
3300018469\|Ga0190270_10025993	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3722	Open in IMG/M
3300018469\|Ga0190270_10249525	Not Available	1543	Open in IMG/M
3300018469\|Ga0190270_11177568	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300018469\|Ga0190270_11867299	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300018476\|Ga0190274_10040177	Not Available	3292	Open in IMG/M
3300018481\|Ga0190271_10101028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2658	Open in IMG/M
3300018481\|Ga0190271_10829160	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300018481\|Ga0190271_12425610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	628	Open in IMG/M
3300018481\|Ga0190271_13029009	Not Available	564	Open in IMG/M
3300018920\|Ga0190273_11607362	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300018920\|Ga0190273_12188169	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300019767\|Ga0190267_10080120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1231	Open in IMG/M
3300019767\|Ga0190267_10484311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	725	Open in IMG/M
3300021082\|Ga0210380_10153762	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300025386\|Ga0208585_1001153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2034	Open in IMG/M
3300025386\|Ga0208585_1002621	Not Available	1582	Open in IMG/M
3300025427\|Ga0208077_1022451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	900	Open in IMG/M
3300025461\|Ga0208851_1005664	Not Available	2959	Open in IMG/M
3300025464\|Ga0208076_1008061	All Organisms → cellular organisms → Bacteria	1752	Open in IMG/M
3300025474\|Ga0208479_1005594	Not Available	2669	Open in IMG/M
3300025475\|Ga0208478_1007310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2573	Open in IMG/M
3300025475\|Ga0208478_1040948	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	896	Open in IMG/M
3300025479\|Ga0208588_1040555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	952	Open in IMG/M
3300025494\|Ga0207928_1090867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	563	Open in IMG/M
3300025524\|Ga0209817_1069149	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300025650\|Ga0209385_1006719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4871	Open in IMG/M
3300025650\|Ga0209385_1028277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2200	Open in IMG/M
3300025750\|Ga0209747_1038221	Not Available	1856	Open in IMG/M
3300025852\|Ga0209124_10311439	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300025931\|Ga0207644_11359238	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300025972\|Ga0207668_11444300	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300026075\|Ga0207708_10422941	Not Available	1105	Open in IMG/M
3300026291\|Ga0209890_10016213	Not Available	2957	Open in IMG/M
3300028596\|Ga0247821_11046801	Not Available	549	Open in IMG/M
3300028597\|Ga0247820_10080468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1948	Open in IMG/M
3300028639\|Ga0302168_1060106	Not Available	556	Open in IMG/M
3300028646\|Ga0302159_10029515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1213	Open in IMG/M
3300028646\|Ga0302159_10060221	Not Available	838	Open in IMG/M
3300028649\|Ga0302162_10138740	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300028651\|Ga0302171_10101289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	693	Open in IMG/M
3300028652\|Ga0302166_10040583	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300028652\|Ga0302166_10180205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	501	Open in IMG/M
3300028664\|Ga0302164_10113146	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium	730	Open in IMG/M
3300028676\|Ga0302167_10193787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	579	Open in IMG/M
3300028679\|Ga0302169_10046597	Not Available	1005	Open in IMG/M
3300028732\|Ga0302264_1016531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1694	Open in IMG/M
3300028733\|Ga0302261_1179614	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300028736\|Ga0302214_1108244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	590	Open in IMG/M
3300028739\|Ga0302205_10013135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2341	Open in IMG/M
3300028741\|Ga0302256_10093154	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	793	Open in IMG/M
3300028770\|Ga0302258_1186619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	514	Open in IMG/M
3300028774\|Ga0302208_10025687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1634	Open in IMG/M
3300028774\|Ga0302208_10099936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	709	Open in IMG/M
3300028777\|Ga0302290_10024241	Not Available	1490	Open in IMG/M
3300028777\|Ga0302290_10224315	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300028790\|Ga0307283_10173374	Not Available	606	Open in IMG/M
3300028802\|Ga0307503_10155913	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300028802\|Ga0307503_10268380	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	842	Open in IMG/M
3300028855\|Ga0302257_1023223	Not Available	1360	Open in IMG/M
3300028865\|Ga0302291_10050738	Not Available	1342	Open in IMG/M
3300029923\|Ga0311347_10100469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1800	Open in IMG/M
3300029980\|Ga0302298_10148011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	755	Open in IMG/M
3300029980\|Ga0302298_10211098	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300029984\|Ga0311332_10175827	Not Available	1601	Open in IMG/M
3300029987\|Ga0311334_10292457	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1270	Open in IMG/M
3300029987\|Ga0311334_10497708	Not Available	979	Open in IMG/M
3300029990\|Ga0311336_10242525	Not Available	1479	Open in IMG/M
3300029990\|Ga0311336_10671030	All Organisms → cellular organisms → Bacteria	887	Open in IMG/M
3300029990\|Ga0311336_10681647	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300029990\|Ga0311336_11233979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	653	Open in IMG/M
3300029995\|Ga0302210_10150026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	652	Open in IMG/M
3300030001\|Ga0302272_1020018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2298	Open in IMG/M
3300030002\|Ga0311350_10589863	Not Available	998	Open in IMG/M
3300030002\|Ga0311350_10852652	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300030003\|Ga0302172_10292540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	524	Open in IMG/M
3300030005\|Ga0302174_10152339	Not Available	625	Open in IMG/M
3300030010\|Ga0302299_10132235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Spongiactinospora → Spongiactinospora rosea	1360	Open in IMG/M
3300030014\|Ga0302175_10099984	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300030114\|Ga0311333_10400447	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1110	Open in IMG/M
3300030114\|Ga0311333_10404849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1104	Open in IMG/M
3300030114\|Ga0311333_10868833	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300030114\|Ga0311333_11951731	Not Available	512	Open in IMG/M
3300030294\|Ga0311349_10967943	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300030294\|Ga0311349_11678782	Not Available	587	Open in IMG/M
3300030339\|Ga0311360_10724545	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300031521\|Ga0311364_11905047	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300031722\|Ga0311351_11071849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	617	Open in IMG/M
3300031726\|Ga0302321_101270867	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300031726\|Ga0302321_101358884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	816	Open in IMG/M
3300031726\|Ga0302321_103460328	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300031854\|Ga0310904_10143804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1377	Open in IMG/M
3300031902\|Ga0302322_102483170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	638	Open in IMG/M
3300031902\|Ga0302322_103155735	Not Available	566	Open in IMG/M
3300031902\|Ga0302322_103515941	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300031918\|Ga0311367_11398532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → unclassified Nocardia → Nocardia sp. NRRL WC-3656	689	Open in IMG/M
3300033550\|Ga0247829_10331370	Not Available	1241	Open in IMG/M
3300033826\|Ga0334847_032702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	587	Open in IMG/M
3300034125\|Ga0370484_0211842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	531	Open in IMG/M
3300034155\|Ga0370498_023393	Not Available	1319	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.86%
Host-Associated	Host-Associated	8.14%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.95%
Plants	Host-Associated → Plants	8.14%
Aquatic	Environmental → Aquatic	2.91%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.23%
Peat	Environmental → Terrestrial → Peat	33.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.81%
Sediment	Environmental → Aquatic → Sediment	2.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.33%
Freshwater	Environmental → Aquatic → Freshwater	0.58%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.58%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	33.14%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.07%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.33%
Loam	Environmental → Terrestrial → Soil → Loam	1.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.16%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.16%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.58%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.58%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	33.14%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	26.16%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.49%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.33%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.33%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.91%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.16%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.16%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.16%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.58%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.58%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.58%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.58%

Habitat	Taxonomy	Distribution
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	31.40%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	25.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.33%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	2.33%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.91%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.74%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.16%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.16%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.16%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.16%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.16%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.16%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.16%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.58%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.58%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.58%
Glacier Forefield Soils	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soils	0.58%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	0.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.58%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.58%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.58%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.58%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.58%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.58%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.58%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908029	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Active Layer A2	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001399	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012	Environmental	Open in IMG/M
3300001400	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012	Environmental	Open in IMG/M
3300001404	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012	Environmental	Open in IMG/M
3300001411	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012	Environmental	Open in IMG/M
3300001415	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-072012	Environmental	Open in IMG/M
3300001417	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012	Environmental	Open in IMG/M
3300001424	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-092012	Environmental	Open in IMG/M
3300001427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012	Environmental	Open in IMG/M
3300001428	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-092012	Environmental	Open in IMG/M
3300001429	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012	Environmental	Open in IMG/M
3300002071	Barrow Graham LP Ref core NGADG0011-312 (Barrow Graham LP Ref core NGADG0011-312,NGADG0011-212, ASSEMBLY_DATE=20131010)	Environmental	Open in IMG/M
3300002162	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-21A	Environmental	Open in IMG/M
3300002347	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 deep-072012 (NGEE Surface samples 415 (1, 2, 3 deep-072012) AP id is 1030520, ASSEMBLY_DATE=20131219)	Environmental	Open in IMG/M
3300002538	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0004-212	Environmental	Open in IMG/M
3300002549	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-212	Environmental	Open in IMG/M
3300003369	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 002-22A	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006640	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300012668	Arctic soils microbial communities. Combined Assembly of 23 SPs	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300015075	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5C, Northern proglacial tributary margin, adjacent to top of river)	Environmental	Open in IMG/M
3300015090	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G5A, Northern proglacial tributary margin, adjacent to top of river)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018070	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300025386	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025427	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025461	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025464	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025474	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025475	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025479	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-3 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025524	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB136-A (SPAdes)	Environmental	Open in IMG/M
3300025650	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B (SPAdes)	Environmental	Open in IMG/M
3300025750	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-311 (SPAdes)	Environmental	Open in IMG/M
3300025852	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028639	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_2	Environmental	Open in IMG/M
3300028646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_2	Environmental	Open in IMG/M
3300028649	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_2	Environmental	Open in IMG/M
3300028651	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_2	Environmental	Open in IMG/M
3300028652	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_3	Environmental	Open in IMG/M
3300028664	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_1	Environmental	Open in IMG/M
3300028676	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_1	Environmental	Open in IMG/M
3300028679	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_3	Environmental	Open in IMG/M
3300028732	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_4	Environmental	Open in IMG/M
3300028733	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_4	Environmental	Open in IMG/M
3300028736	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_3	Environmental	Open in IMG/M
3300028739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_3	Environmental	Open in IMG/M
3300028741	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_4	Environmental	Open in IMG/M
3300028770	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_4	Environmental	Open in IMG/M
3300028774	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_3	Environmental	Open in IMG/M
3300028777	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_3	Environmental	Open in IMG/M
3300028790	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_122	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028855	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_4	Environmental	Open in IMG/M
3300028865	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_4	Environmental	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029980	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_3	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029987	I_Fen_E3 coassembly	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300029995	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E3_2	Environmental	Open in IMG/M
3300030001	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N1_2	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030003	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N2_3	Environmental	Open in IMG/M
3300030005	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_2	Environmental	Open in IMG/M
3300030010	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4	Environmental	Open in IMG/M
3300030014	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_3	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300031460	Rock endolithic microbial communities from Victoria Land, Antarctica - Linnaeus Terrace nord	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031722	II_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033826	Peat soil microbial communities from Stordalen Mire, Sweden - 714 E2 1-5	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034155	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_05D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A2_v1_00007930	2124908029	Soil	MSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEGSADDHQ
JGI10216J12902_1063761321	3300000956	Soil	CGRRSGSPVVRRGRLRASRPRRIPVDPISQLAFDLDDLPPAAGSPVDPPPDLPDRDRAAAVAKLASLIARLHAATGYADERE*
JGI20178J14841_1000112	3300001399	Arctic Peat Soil	VHPMSQLAFDLDDVAPXVPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
JGI20178J14841_1000901	3300001399	Arctic Peat Soil	VHPMSQLAFDLDDVAPEPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
JGI20183J14883_1045403	3300001400	Arctic Peat Soil	VHPISQLAFDLDVASSAPPMVMGPPPDELPEQDRAAAVSKLAPVIARHHAAAGSADDDE*
JGI20181J14860_10118171	3300001404	Arctic Peat Soil	VHPMSQLAFDLDDVAPEVPPRVIARPPDGLPDLDREAAVAKLASLIARYHAAEGSADD
JGI20181J14860_10143421	3300001404	Arctic Peat Soil	VHPMRSQLAFDLDDAAAAPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
JGI20181J14860_10159711	3300001404	Arctic Peat Soil	VHPMSQLAFDLDDVAPEVPPRVIARPPDGLPDLDREAAVAKLASLIARYHAA
JGI20181J14860_10170052	3300001404	Arctic Peat Soil	VHPMSQLAFDLDDAEPEPPPLIGRPPGDLPDRDRAAAVAKLASLIARYHTAEGSADDHR*
JGI20181J14860_10183601	3300001404	Arctic Peat Soil	VHPMSQLAFDLDDVAPEVPPRVIARPPDGLPDLDREAAVAKLASLIARYHAAE
JGI20182J14882_1000442	3300001411	Arctic Peat Soil	VHPISQLAFDLDVASSAPPMVMGPPPDELPEQDRAAAVSKLASLIARHHAAAGSADDDE*
JGI20184J14884_1001581	3300001415	Arctic Peat Soil	VHPMSQLAFDLDDVAPEXPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
JGI20196J14858_10126242	3300001417	Arctic Peat Soil	RSQLAFDLDDAAAEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
JGI20198J14950_10071152	3300001424	Arctic Peat Soil	VHPMRSQLAFDLDDAAPAPPPVIGRPEDLPDRDREAAVAKLASLIARYHAAEVSADDHQ*
JGI20200J14955_10024752	3300001427	Arctic Peat Soil	VHPISQLAFDLDVASAPPAVVGAPPDDLPEQDRAAAVRKLASLIARHHASEGSTGDHE*
JGI20200J14955_10108852	3300001427	Arctic Peat Soil	VHPMRSQLAFDLDDAAAAPSPVIGRPPEDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
JGI20201J14949_10240682	3300001428	Arctic Peat Soil	VHPMRSQLAFDLDDAAPAPPPVIGRPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
JGI20202J14951_10164702	3300001429	Arctic Peat Soil	VHPMSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAXGSADDHQ*
JGI20202J14951_10173761	3300001429	Arctic Peat Soil	VHPMSQLAFDLDDAAPAPPPVIGRPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
JGIcombinedJ21915_100573832	3300002071	Arctic Peat Soil	RRIPVHPMSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEGSADDHQ*
JGI24139J26690_10048962	3300002162	Arctic Peat Soil	VHPTSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEXSADDHQ*
JGIcombinedJ26865_10032032	3300002347	Arctic Peat Soil	VHPISQLAFDLDVASSAPPMVMGPPPDELPEQDRAAAVSKLAXXIARHHAAAGSADDDE*
JGI24132J36420_100551001	3300002538	Arctic Peat Soil	LAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGSADDHQ*
JGI24130J36418_100155641	3300002549	Arctic Peat Soil	VHPTSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGSADDHQ*
JGI24140J50213_100639462	3300003369	Arctic Peat Soil	VHPMSQLXFDLDDAEPEPPPXIGRPPEDLPDRXRXAAVAKLASLIARYHTAEGSADDHR*
JGI24140J50213_100901922	3300003369	Arctic Peat Soil	VHPMSQLAFDLDDVPEPPPVIGRPPDDLPDRSREAAVAKLASLIARYHTAEGSADDHQ*
JGI24140J50213_101031361	3300003369	Arctic Peat Soil	VHPMRSQLAFDLDDAAAEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
JGI24140J50213_101076331	3300003369	Arctic Peat Soil	VHPMSQLAFDLDDVAPEVPPRVIARPPDGLPDLDREAAVAKLASLIARYHAAEGSADDHQ
JGI24140J50213_101193882	3300003369	Arctic Peat Soil	VHPMSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEGSADDHQ*
Ga0068869_1005018542	3300005334	Miscanthus Rhizosphere	VHPISQLAFDLDVASAPPAVMGAPPDDLPEQDRAAAVRKLASLIARHHASEGATDDDE*
Ga0068868_1002004032	3300005338	Miscanthus Rhizosphere	VHPISQLAFDLDVASAPPAVMGAPPDDLPEQDRAAAVRKLASLIARHHASEGSTDDDE*
Ga0070668_1014306101	3300005347	Switchgrass Rhizosphere	GPAPWRTLRAFRRRRTPVHPISQLAFDLDVASAPPAVMGAPPDDLPEQDRAAAVRKLASLIARHHASEGSTDDDE*
Ga0070675_1008502672	3300005354	Miscanthus Rhizosphere	PISQLAFDLDLDVASAPPAVMGPPPDDLPEQDRAAAVRKLASLIARHHASEGATDDDE*
Ga0070671_1017870061	3300005355	Switchgrass Rhizosphere	VHPMSQLAFDLDDVAPEPPPAADRPPEDLPDRDREAAVAKLASLIARYHAAEESPDDHE*
Ga0070673_1010987451	3300005364	Switchgrass Rhizosphere	VHPISQLAFDLDLDVASAPPAVMGPPPDDLPEQDRAAAVRKLASLIARHHASEGSTGDDE
Ga0070710_107274202	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LWRTLRAFRPRRTPVHPISQLAFDLDLDVASAPPAVMGPPPDDLPEQDRAAAVRKLASLIARHHASEGATDDDE*
Ga0075026_1007179722	3300006057	Watersheds	LAFDLDDAEPEPPPVIGRPPEDLPDRDRAAAVAKLASLIARYHTAEGSADDHL*
Ga0074051_115414252	3300006572	Soil	VHPISQLAFDLDVASAPPAVMGPPPDDLPEQDRAEAVRKLASLIARHHASEGSTDDDE*
Ga0074055_104594652	3300006573	Soil	VRRPGPAAWRTLRAFRPRRTPVHPISQLAFDLDVASAPPAVMGPPPDDLPEQDRAEAVRKLASLIARHHASEGSTDDDE*
Ga0074048_131709732	3300006581	Soil	VHPISQLAFDLDVASAPPAVMGPPPDDLPEQDRADAVRKLASLIARHHASEGSTDDDK*
Ga0074057_120502882	3300006605	Soil	VHPMSQLAFDLDDVAPEVPPPVIGRPPDGLPDLDREAAVAKLASLIARYHAAEGSADDHH
Ga0075527_101028422	3300006640	Arctic Peat Soil	ARRRTLRASRPRRIPVHPMRSQLAFDLDGAAAGPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
Ga0079222_114575792	3300006755	Agricultural Soil	VDPISQLAFDLDDLPPAAGSPVDPPPDLPDRDRAAAVAKLASLIARLHAATGYADERE*
Ga0075520_10252252	3300006795	Arctic Peat Soil	VHPTSQLAFDLDDAPVAPTVVDRPPEDLPDLDRETAVRKLATLIARYHAAEGSADDHQ*
Ga0105243_103585602	3300009148	Miscanthus Rhizosphere	VHPISQLAFDLDLDVASAPPAVMGPPPDDLPEQDRAAAVRKLASLIARHHASEGSTDDDE
Ga0105248_124241182	3300009177	Switchgrass Rhizosphere	MSQLAFDLDDVAPEPPSRAADRPPEDLPDRDREAAVAKLASLIARYHAAEGSADDHE*
Ga0134122_110398002	3300010400	Terrestrial Soil	VHPISQLAFDLDVASAPPAVMGAPLDDLPEQDRAAAVRKLASLIAQHHASEGSTDDDE*
Ga0157216_104494582	3300012668	Glacier Forefield Soil	MSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHTAEGSADDHQ*
Ga0164300_105740122	3300012951	Soil	VHPISQLAFDLDLDVASAPPAVMGPPPDDLPEQDRAAAVRKLASLIARHHAS
Ga0164298_109339931	3300012955	Soil	MSQLAFDLDDVAPEPPPAAERPPEDLPERDREVAVAKMASLSARYHAAEGSADDHE*
Ga0164299_106473792	3300012958	Soil	MSQLAFDLDDLPPATEPAPAQPPVELPDRDRAAAVAKLASLIARLHAATERTDDRS*
Ga0164299_107954152	3300012958	Soil	MHPISQLAFDLDLASPPPAVMGPPPDDLPDQDRAEAVRKLASLIARHHASEGSTDDDE*
Ga0164299_112235681	3300012958	Soil	SQVAFDLDDVAPEPPPAADRPPEDLPERDREVAVAKMASLIARYHAAEGSADDHE*
Ga0164308_102681022	3300012985	Soil	MSQLAFDLDDVAPEPPPAADRPPEDLPERDREVAVAKMASLIARYHAAEGSADDHE*
Ga0164308_116935992	3300012985	Soil	MSQLAFDLDDLPPAAEPAPAEPPVELPDRDRAAAVAKLASLIARLHAATERTDDRS*
Ga0164306_115734091	3300012988	Soil	VHPISQLAFDLDLDVASPPPAVMGPPPDDLPEQDRAAAVRKLASLIARHHAS
Ga0157374_100408103	3300013296	Miscanthus Rhizosphere	VHPISQLAFDLDLDVASAPSAVMGPPPDDLPEQDRAAAVRKLASLIARHHASEGATDDDE
Ga0157375_116323482	3300013308	Miscanthus Rhizosphere	MSQLAFDLDDVAPEPPPAADRPPEDLPEQDREAAVAKLASLIARYHAAEGSADDHE*
Ga0182010_100155182	3300014490	Fen	LAFDLDDVADRPPEDLPDQDREAAVAKLASLIARYHTADGAADDHR*
Ga0182019_100776582	3300014498	Fen	MSQLTFDLDDAEPEPPPMIGRPPEDLPDRDRQAAVAKLASLIARYHTAEGSADDHR*
Ga0182019_108132752	3300014498	Fen	MSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEGSADDHQ*
Ga0182019_109389351	3300014498	Fen	MSQLAFDLDDVAPEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
Ga0167636_10248522	3300015075	Glacier Forefield Soils	MRSQLAFDLDDAAAEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
Ga0167634_10032022	3300015090	Glacier Forefield Soil	MSQLAFDLDDVPEPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ*
Ga0132258_129481191	3300015371	Arabidopsis Rhizosphere	TLRGFRPRRIPVHPMSQLAFDLDDVAPEPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHH*
Ga0132257_1028311692	3300015373	Arabidopsis Rhizosphere	MSQLAFDLDDVAPAAPPVIGRPPDDLPDRDREAAVTKLASLIARYHTAEGSADDHH*
Ga0190266_110094092	3300017965	Soil	DLDDVASEPPPPVIGRPPDDLPVRDREAAVAKLASLIARYHTAEGSADDHH
Ga0184631_103694632	3300018070	Groundwater Sediment	VHPMSQLAFDLDDVAPEVPPTVLERPPDGLPDLDREAAVAKLASLIARYHAAEGSADDHQ
Ga0184628_100916852	3300018083	Groundwater Sediment	VHPMSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHTAGGSADDHQ
Ga0184628_102432352	3300018083	Groundwater Sediment	VDPISQLAFALDLDVVSAPPPVIGRPPEDLPEQDRAAAVRKLASLIARHHVAGWSADDDE
Ga0190272_133195011	3300018429	Soil	VHLISQLAFDLDDVAPAAPPVADRPPEDLPELDRQAAVQKLASLIARYHAAEGSADDDQ
Ga0190275_100773492	3300018432	Soil	VHPISQLAFDLDVASAPPAVMGAPPDDLPEQDRAAAVRKLASLIARHHASEGSTDDDE
Ga0190270_100259931	3300018469	Soil	VHPISQLAFDLDVASAPPAVMGAPPDDLPEQDRAAAVRKLASLIARRHASEGSTDDDE
Ga0190270_102495251	3300018469	Soil	VHLISQLAFDLDDVAPAAPPVADRPPEGLPELDRQAAVRKLASLIARYHAAEGSADDDQ
Ga0190270_111775682	3300018469	Soil	RGRWRTLRAFRPRRAPVHLISQLAFDLDDVAPKAPPVADRPPEDLPVRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0190270_118672991	3300018469	Soil	HPISQLAFDLDVASPPAVMGAPPDDLPEQDRAAAVRKLASLIARHHASEGATDDDE
Ga0190274_100401772	3300018476	Soil	VHPISQLAFDLDVASAPPAVMGAPPDDLPEQDRAAAVRKLASLIARHHASEGSTDDHE
Ga0190271_101010282	3300018481	Soil	MSQLAFDLDDVAPEPLPVIGRPPDDLPVRDREAAVAKLASLIARYHAAEGSADDHE
Ga0190271_108291602	3300018481	Soil	MHPISQLAFDLDLDVASAPPAVMGPPPDDLPEQDRAVAVRKLASLIARHHASEGATDDDE
Ga0190271_124256102	3300018481	Soil	VHLISQLAFDLDDVAPAAPPVADRPPEGLPELDRQAAVRKLASLIARYHAAEGSADD
Ga0190271_130290092	3300018481	Soil	VHPISQLAFDLDVASAPPVVMGPPPDDLPEQDRAAAVRKLASLIARHHASEGSTDD
Ga0190273_116073622	3300018920	Soil	VHPISQLAFDLDVASAPPAVMGAPPDDLPEQDRAAAVRKLASLIARHHASEGSTGDDE
Ga0190273_121881691	3300018920	Soil	FRPRRTPVHPISQLAFDLDLASPPPAVMAAPPDDLPEQDRAAAVRKLASLIARHHASEGSTDDHE
Ga0190267_100801201	3300019767	Soil	VHLISQLAFDLDDAAPPVADRPPEDLPELDRQAAVQKLASLIARYHAAEGSADDDQ
Ga0190267_104843111	3300019767	Soil	VHPTSQLTFDLEVESVPPPALAVIGAPPDGLPDRDRAAAVRKLAMLIAKHHAATGPVG
Ga0210380_101537622	3300021082	Groundwater Sediment	MSQLAFDLDDVAPEVPPTVLERPPDGLPDLDREAAVAKLASLIARYHAAEGSADDHQ
Ga0208585_10011532	3300025386	Arctic Peat Soil	VHPTSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0208585_10026212	3300025386	Arctic Peat Soil	VHPMSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEGSADDHQ
Ga0208077_10224511	3300025427	Arctic Peat Soil	VHPMSQLAFDLDDVAPEVPPRVIGRPPDGLPDLDREAAVAKLASLIARYHAAEGSADDHQ
Ga0208851_10056643	3300025461	Arctic Peat Soil	VHPISQLAFDLDVASAPPAVVGAPPDDLPEQDRAAAVRKLASLIARHHASEGSTGDHE
Ga0208076_10080612	3300025464	Arctic Peat Soil	VHPMSQLAFDLDDVAPEPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0208479_10055943	3300025474	Arctic Peat Soil	VHPISQLAFDLDVASSAPPMVMGPPPDELPEQDRAAAVSKLAPVIARHHAAAGSADDDE
Ga0208478_10073102	3300025475	Arctic Peat Soil	VHPMSQLAFDLDDVAPEVPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0208478_10409481	3300025475	Arctic Peat Soil	MSQLAFDLDDVAPEVPPRVIARPPDGLPDLDREAAVAKLASLIARYHAAEGSAD
Ga0208588_10405552	3300025479	Arctic Peat Soil	MSQLAFDLDDVAPEVPPRVIARPPDGLPDLDREAAVAKLASLIARYHAAEGSADDHQ
Ga0207928_10908672	3300025494	Arctic Peat Soil	VHPMRSQLAFDLDDAVPAPSPVIGRPPEDLPDRDREAAVAKLASLIARYHAAGGSADDHQ
Ga0209817_10691491	3300025524	Arctic Peat Soil	VHPMRSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0209385_10067192	3300025650	Arctic Peat Soil	VHPTSQLAFDLDDAPVAPTVVDRPPEDLPDLDRETAVRKLATLIARYHAAEGSADDHQ
Ga0209385_10282772	3300025650	Arctic Peat Soil	VHPTSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEVSADDHQ
Ga0209747_10382212	3300025750	Arctic Peat Soil	VHPMSQLAFDLDDAAPAPPRVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0209124_103114392	3300025852	Arctic Peat Soil	LAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0207644_113592382	3300025931	Switchgrass Rhizosphere	VHPISQLAFDLDLDVASAPPAVMGPPPDDLPEQDRAAAVRKLASLIARHHASEGATDDGE
Ga0207668_114443002	3300025972	Switchgrass Rhizosphere	RRRPGPAPWRTLRAFRRRRTPVHPISQLAFDLDVASAPPAVMGAPPDDLPEQDRAAAVRKLASLIARHHASEGSTDDDE
Ga0207708_104229411	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	RRRRTPVHPISQLAFDLDVASAPPAVMGAPPDDLPEQDRAAAVRKLASLIARHHASEGSTDDDE
Ga0209890_100162132	3300026291	Soil	VQPMSQLAFDLDDVAPEVPPPVIERPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0247821_110468012	3300028596	Soil	MSQLAFDLDDVAPEPPPAADRPPEDLPERDREVAVAKMASLIARYHAAEGSADDHE
Ga0247820_100804683	3300028597	Soil	VVRRGRLRASRPRRIPVDPISQLAFDLDDLPPVVEIERQLTDRVRAAAVAKLASLIARLHAATGYADERE
Ga0302168_10601062	3300028639	Fen	VHPMSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEG
Ga0302159_100295152	3300028646	Fen	VHPMSQLTFDLDDAEPEPPPMIGRPPEDLPDRDRQAAVAKLASLIARYHTAEGSADDHR
Ga0302159_100602211	3300028646	Fen	LDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEGSADDHQ
Ga0302162_101387401	3300028649	Fen	MSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEGSADDRQ
Ga0302171_101012892	3300028651	Fen	VHPTSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAA
Ga0302166_100405831	3300028652	Fen	MSQLAFDLDDVAAAPPPAADRPPEDLPDQDREAAVAKLASLIARYHAAEGSADDHQ
Ga0302166_101802052	3300028652	Fen	VHPMSQLAFDLDDVAPEVPPRVIARPPDGLPDLDREAAVAKLASLIARYHAAEGSA
Ga0302164_101131462	3300028664	Fen	VHPMRSQLAFDLDDAAAEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHR
Ga0302167_101937872	3300028676	Fen	VHPMRSQLAFDLDDAAAAPPPVADRPPEDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0302169_100465972	3300028679	Fen	HRRSGPARRRTLRGFRSRRIPVHPMSQLAFDLDDAAAAPPPVADRPPEDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0302264_10165312	3300028732	Fen	VHPMSQLTFDLDDAEPEPPPMIGRPPEDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0302261_11796142	3300028733	Fen	VHPMRSQLAFDLDDVAPEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0302214_11082442	3300028736	Fen	VHPMSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0302205_100131352	3300028739	Fen	VHPMSQLTFDLDDAEPEPPPMIGRPPEDLPDRDRQAAVAKLASLIARYHTADGAADDHR
Ga0302256_100931542	3300028741	Fen	VHPMSQLAFDLDDVAPEVPPRVIARPPDGLPDLDREAAVAKLASLIARYHAAEGSADDHR
Ga0302258_11866191	3300028770	Fen	VHPTSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGS
Ga0302208_100256872	3300028774	Fen	VHPMSQLAFDLDDVAPEVPPRVIARPPDGLPDLDREAAVTKLASLIARYHAAEGSADDHQ
Ga0302208_100999362	3300028774	Fen	VHPMRSQLAFDLDDAAAEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTPEGSADDHQ
Ga0302290_100242411	3300028777	Fen	PVHPMSQLTFDLDDAEPEPPPMIGRPPEDLPDRDRQAAVAKLASLIARYHTAEGSADDHR
Ga0302290_102243152	3300028777	Fen	VHPMSQLAFDLDDAAAAPPPVADRPPEDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0307283_101733742	3300028790	Soil	MHPISQLAFDLDLDVASAPPAVMGPPPDDLPEQDRAAAVRKLASLIARHHASEGATDDNE
Ga0307503_101559132	3300028802	Soil	MHPISQLAFDLDLDVASAPPAVMGPPPDDLPEQDRAAAVRKLASLIARHHASEGATDDDE
Ga0307503_102683802	3300028802	Soil	VHPMSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGAADDHQ
Ga0302257_10232232	3300028855	Fen	MSQLAFDLDDAAAAPPPVADRPPEDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0302291_100507381	3300028865	Fen	PMSQLAFDLDDVAPEVPPRVIARPPDGLPDLDREAAVAKLASLIARYHAAEGSADDHQ
Ga0311347_101004692	3300029923	Fen	VHPMSQLTFDLDDAEPEPPPMIGRPPEDLPDRDRQAAVAKLASLIARYHAAEGSADDHQ
Ga0302298_101480111	3300029980	Fen	VHPMSQLAFDLDDVAPEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDH
Ga0302298_102110981	3300029980	Fen	CHRRSGPARRRTLRGFRSRRTPVHPSSQLAFDLDDVAPGPPPVIERPPDDLPDQDREAAVRKLASLIARYHAAGGPADDPE
Ga0311332_101758272	3300029984	Fen	VHPMRSQLAFDLDDAAAEPPPVIGRPPEDLPDRDREAAVAELASLIARYHTAEGSADDHQ
Ga0311334_102924571	3300029987	Fen	VGADAAEDATGIPIKAVPVHPTSQLAFDLDDVADRPPEDLPDLDRLAAVRKLAVLIARYHVAGGPADDRQ
Ga0311334_104977082	3300029987	Fen	VHPMRSQLAFDLDDVVSGPPPVIGRPPEDLPDRDREAAVARLASLIARYHTAEGSADDHQ
Ga0311336_102425251	3300029990	Fen	VDPISQLTFALDFDVVSAPPPAIGRPPEDLPEQDRAAAVRKLASLIARHHVAGWSADDDE
Ga0311336_106710301	3300029990	Fen	VHPMSQLAFDLDDAEPEPPPLIGRPPEDLPDRDRQAAVAKLASLIARYHTADGSADDHR
Ga0311336_106816472	3300029990	Fen	VHPMSQLAFDLDDVAAAPPPVADRPPEDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0311336_112339791	3300029990	Fen	MSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0302210_101500262	3300029995	Fen	VHPMSQLAFDLDDVAPEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDP
Ga0302272_10200183	3300030001	Bog	MSQLAFDLDDAAPAPPPVADRPPEDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0311350_105898631	3300030002	Fen	DLDDAAAEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0311350_108526521	3300030002	Fen	LAFDLDDVAPGPPPVIERPPDDLPDQDREAAVRKLASLIARYHAAGGPADDPE
Ga0302172_102925401	3300030003	Fen	VHPMSQLAFDLDDAAAEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAE
Ga0302174_101523392	3300030005	Fen	VHPMSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEGSA
Ga0302299_101322352	3300030010	Fen	VLPMRSQLAFDLDDAAAEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0302175_100999841	3300030014	Fen	AFDLDDVAPEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0311333_104004472	3300030114	Fen	VHRMRSQLAFDLDDAAAEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0311333_104048492	3300030114	Fen	MSQLAFDLDDVAAAPPPVADRPPEDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0311333_108688331	3300030114	Fen	HPTSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0311333_119517311	3300030114	Fen	VHPINQLAFDLDVASAPPMVMGPPPDELPEQDRAAAVSKLASLIARHHAAAGSADD
Ga0311349_109679431	3300030294	Fen	PARRRTLRASRPRRIPVHPMSQLAFDLDDVAPEPPPVIGRPPDDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0311349_116787821	3300030294	Fen	VHPSSQLAFDLDDVAPGPPPVIERPPDDLPDQDREAAVRKLASLIARYHAAGGPADDP
Ga0311360_107245452	3300030339	Bog	PARRRTLRASRPRRIPVHPMRSQLAFDLDDAAAEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0272430_10255415	3300031460	Rock	VHLSSQLAFDLDVESVVPPSVTARPPLDLPDQDRGVAVQQLASLIARYHAAGGSADDDE
Ga0311364_119050471	3300031521	Fen	QGGPVDPISQLTFALDFDVVSAPPPAIGRPPEDLPEQDRAAAVRKLASLIARHHVAGWSADDDE
Ga0311351_110718492	3300031722	Fen	VHPMSQLTFDLDDAEPEPPPMIGRPPEDLPDRDRQAAVAKLASLIARYHTA
Ga0302321_1012708672	3300031726	Fen	VHPMSQLAFDLDDAAAEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0302321_1013588842	3300031726	Fen	VHPMSQLAFDLDDVAPEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHTAEGSADDHQ
Ga0302321_1034603281	3300031726	Fen	RPARRRTLRGFRPRRIPVHPTSQLAFDLDDAAPAPPPVIGRPPDDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0310904_101438043	3300031854	Soil	VDPISQLAFDLDDLPPAAGSPVDPPPDLPDRDRAAAVAKLASLIARLHAATGCTDDQE
Ga0302322_1024831701	3300031902	Fen	VHPMSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEGSADD
Ga0302322_1031557352	3300031902	Fen	IPVHPTSQLAFDLDDVADRPPEDLPDLDRLAAVRKLAVLIARYHVAGGPADDHQ
Ga0302322_1035159412	3300031902	Fen	VEDATGISGQGGPVDPISQLTFALDFDVVSAPPPAIGRPPEDLPEQDRAAAVRKLASLIARHHVAGWSADDDE
Ga0311367_113985321	3300031918	Fen	PVHPMSQLAFDLDVASAPPMVMGPPPDELPEQDRAAAVSKLASLIARHHAAAGSADDDE
Ga0247829_103313701	3300033550	Soil	PWRTLRAFRRRRTPVHPISQLAFDLDVASAPPAVMGAPPDDLPEQDRAAAVRKLASLIARHHASEGSTDDDE
Ga0334847_032702_366_536	3300033826	Soil	MSQLAFDLDDVAPEPPPVIGRPPEDLPDRDREAAVAKLASLIARYHAAEGSADDHQ
Ga0370484_0211842_365_529	3300034125	Untreated Peat Soil	MSQLAFDLDDVAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEGSADDH
Ga0370498_023393_1038_1208	3300034155	Untreated Peat Soil	MSQLAFDLDDAAAAPPPVADRPPEDLPDQDREAAVAKLASLIARYHAAEGSADDHQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F035555

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences