NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300001330

3300001330: Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-5cm)- 6 month illumina



Overview

Basic Information
IMG/M Taxon OID3300001330 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0083722 | Gp0054898 | Ga0012391
Sample NamePermafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-5cm)- 6 month illumina
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Tennessee
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size45272243
Sequencing Scaffolds27
Novel Protein Genes29
Associated Families29

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available5
All Organisms → cellular organisms → Bacteria6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi4
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium4
All Organisms → cellular organisms → Bacteria → FCB group1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_66_121
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium1
All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NamePermafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)
TypeEnvironmental
TaxonomyEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost → Permafrost And Active Layer Microbial Communities From Mcgill Arctic Research Station (Mars)

Alternative Ecosystem Assignments
Environment Ontology (ENVO)terrestrial biome → active permafrost layer → permafrost
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Soil (non-saline)

Location Information
LocationAxel Heiberg Island, Nunavut, Canada
CoordinatesLat. (o)79.26Long. (o)-90.46Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002700Metagenome / Metatranscriptome536Y
F004019Metagenome / Metatranscriptome457Y
F004400Metagenome / Metatranscriptome440Y
F005040Metagenome / Metatranscriptome414Y
F007272Metagenome / Metatranscriptome354Y
F011345Metagenome / Metatranscriptome292Y
F019257Metagenome / Metatranscriptome231Y
F020989Metagenome221Y
F021621Metagenome / Metatranscriptome218Y
F023390Metagenome / Metatranscriptome210Y
F031391Metagenome182Y
F038277Metagenome / Metatranscriptome166Y
F041156Metagenome / Metatranscriptome160Y
F050034Metagenome / Metatranscriptome146Y
F051215Metagenome / Metatranscriptome144Y
F054242Metagenome / Metatranscriptome140Y
F057710Metagenome136Y
F066861Metagenome / Metatranscriptome126Y
F071335Metagenome122Y
F072578Metagenome / Metatranscriptome121Y
F072634Metagenome / Metatranscriptome121Y
F080388Metagenome / Metatranscriptome115Y
F085674Metagenome / Metatranscriptome111Y
F089564Metagenome / Metatranscriptome109Y
F092504Metagenome107Y
F093402Metagenome106Y
F093675Metagenome / Metatranscriptome106Y
F094581Metagenome / Metatranscriptome106Y
F101767Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
A305W6_1000188Not Available517Open in IMG/M
A305W6_1000902All Organisms → cellular organisms → Bacteria1921Open in IMG/M
A305W6_1002056All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2838Open in IMG/M
A305W6_1002199All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2185Open in IMG/M
A305W6_1002457All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria644Open in IMG/M
A305W6_1002750All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi1916Open in IMG/M
A305W6_1005201Not Available909Open in IMG/M
A305W6_1009826Not Available1171Open in IMG/M
A305W6_1010857All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium714Open in IMG/M
A305W6_1012158All Organisms → cellular organisms → Bacteria585Open in IMG/M
A305W6_1022057All Organisms → cellular organisms → Bacteria749Open in IMG/M
A305W6_1022157Not Available1068Open in IMG/M
A305W6_1032975All Organisms → cellular organisms → Bacteria → FCB group536Open in IMG/M
A305W6_1039562All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium1304Open in IMG/M
A305W6_1043393Not Available672Open in IMG/M
A305W6_1061733All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium583Open in IMG/M
A305W6_1062808All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium743Open in IMG/M
A305W6_1075243All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi752Open in IMG/M
A305W6_1080129All Organisms → cellular organisms → Bacteria528Open in IMG/M
A305W6_1081302All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_66_12588Open in IMG/M
A305W6_1084269All Organisms → cellular organisms → Bacteria678Open in IMG/M
A305W6_1085577All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatimonas → Gemmatimonas aurantiaca622Open in IMG/M
A305W6_1097228All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium524Open in IMG/M
A305W6_1101646All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium755Open in IMG/M
A305W6_1112417All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes604Open in IMG/M
A305W6_1128499All Organisms → cellular organisms → Bacteria543Open in IMG/M
A305W6_1181333All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium553Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
A305W6_1000188A305W6_10001882F101767PASHLVVSSETDEQRVQRIETSAEGLGLRFVFYANTGHFILREGGKPWGYVVSSRDVSEALDEAESQLEAERDRRTAKPRRAG*
A305W6_1000902A305W6_10009021F031391AWGSSSAAFGDDQEQGGGEQYIELIGSQLWAAGMINLGRFRRVSDFVNIVQGYFVMHDVVVLTRSGEATRLTLPELRVLPDDIAVVGQLGDDKPAQTSETGTYIEKMAQRLVVLTRSHIIDGDVFIHGDGSIMSFVDATDPKFIPMSDVRVRWVSDRKLAARYPFALLQRAQILGVATEGIKLGGAESTARRAEMLKAQVRASAGSPDPLDVDLGPGVDAAAASPGDASDEV*
A305W6_1002056A305W6_10020563F051215VALDRAKDSASGSYGTPRWVLVASLIGLVIAALGVTVLIDPHGGENLLAAIYERLGNAAGADALRNGQGDQFYAKLLLAAIALLVGVGGIWL
A305W6_1002199A305W6_10021992F041156VGTDFRNLAVVLTRTTAMLLLAVLLILVILPAALAASSR*
A305W6_1002457A305W6_10024571F072634LVAEQPDITLAELKGLLAKEKVTVGQSSIFRFLYHLNLRFKKKSAGRRAGPTGRRRRT*
A305W6_1002750A305W6_10027504F020989MGLFDQPDRRPVRVAVTSDGRRVQLPVEQPEVPVLSLIRSILVGIESLVLLITGARREHGGTRKDDRS*
A305W6_1004525A305W6_10045255F093675MAPFIAIVLSIGIMAAFGIAGAIWGTDSRPSYGDDHAR*
A305W6_1005201A305W6_10052013F019257NMDTGPQPIADKAEADQVRQQAKAVYIKAIISAAILTALALIQ*
A305W6_1009826A305W6_10098261F085674VTGEALLLGIATIAVAVAGFTAVTSTLVPPGGAWSPAMRIRQRAIVSTSFNVVFESLAPQVIFAGTGDTVASFRIASAGVAIYATGIVIWRARQMLRAGGPRTPVALILFVVGPLATLLFWANALIFASLAVFALALCLQLSIAVVSFYSLVSA
A305W6_1010857A305W6_10108571F092504GVRNLASGGIVAKGPGGGGCDCDEDFNHARWFPPDSFEIAVAHTNTKGGWERVSGKASARRIHVDSLTDEPDWH*
A305W6_1012158A305W6_10121582F050034MNKPENRVDKIVSDLLRGRRLKLRGGDAEEKAAITAAARLIAARQGTQRMNPAFRKRLEKALEAAPDEH
A305W6_1022057A305W6_10220572F011345MRRRSRHQLVLDLDRGGRTLPPPTAPEGLLTALADLLLEALGKENKAMPVEREVCDAFQDHA*
A305W6_1022157A305W6_10221572F004019MTDPATPAQPAPEVLPHVDLGMSITIATTITVISAILVAGATYEVIRGTLSSGMTRLLAVVSLLSLVAMFYGLIELALAVIATTAERRRQSRVVSERRQGDRARKPTPH*
A305W6_1032975A305W6_10329752F089564MWVDAERLVLLRFIQRTKSGERTTISDSRVQNYKEIQGFLVPTEFLVLRNGRPVWREEYANVRINEELPDGIFDQARWKDIPIPQ*
A305W6_1039562A305W6_10395621F004400MIPNSSFWRNLVPDDTGNLKKGNFMQALDSIRAEAERLMARRDLPPEVKAGLDRIIGLT
A305W6_1043393A305W6_10433932F072578AQHQWQLGYAWLEIGQLVHVIFEGYPPGTFPPTCEGSVPCFGGEEPKSETIAGHVVHWYDHNHASHSGHIAAVFTWHGDTYAVSIHVASPVSTKVIAKRDLRHIILSSSLLKPE*
A305W6_1061733A305W6_10617333F002700EEIPATEILILYDPEGEASLAILFFDTEEDYRRGDAALNAMPADDTPGSRSSVTKYDVAVRMTG*
A305W6_1062808A305W6_10628081F071335MTAHKSGNPEPVVSVAKRILSTRAEEVAPYAQLYPLLLAEMDEIMDEWNRNTDELPWSALEAADRQNNLAGVITRVIDCAMSPAARDIRVTALIDAACNHGEARRKQGLDVQSLFTEYFVVRTATWRQLRTLAEGQTAYNAIFVIDGLLSIASRGTVLGYHRAEMEANGLWSEHRKELEKSVRS*
A305W6_1075243A305W6_10752432F057710MAKKDDRPIDVGLAALSGNDEAAAIAFWKKRFELIAAIPSDIARVGAMTPQLRELTRMASEPERERLTRARIVAFAQLPTDVRQKITDARKAAWDIDKGVLEKDQALVDKILPTVDASVRSAYPS*
A305W6_1080129A305W6_10801291F021621VWICLTVGLLDTVNAIIQSMRFSVFTYPLGLNWVIVTAYVPALLVSSVLIFIHLRRPAYSAT*
A305W6_1081302A305W6_10813022F054242MERADHFPEAFARHLAEQQSRMRDADALVYYAHSRTGLLARFLQRMADRVDPTGEARRTQR*
A305W6_1084269A305W6_10842691F093402SNSVWTTDNQLQTQIRNGAAKVGANAVIVNPVTQSKSTVKVLGEAIGTSSATQKATALAIYMPRDAARVRQACGTT*
A305W6_1085577A305W6_10855771F066861DLSGDKITLDGGATIFTSKASQLASDTTAIPPGSLRMSLEDLKAIMPNLSAGMKVYFY*
A305W6_1097228A305W6_10972282F094581ISHLGAGVSADVAEVADATGLSREHAERMLDILWRRRLVIRHDNGYVAVGSATAAVGPMRVDA*
A305W6_1101646A305W6_11016462F080388MPDISLPEIHLPDVKLPEGLRDMNRQDIQNAIGDARARMPKRIEMPDIDLSKMELPKALEGRLPKSVEDRLPMKRRSNPILPLAALFAVGSMIAAAWWLITSPTASTRVRETVDRVRYKLTGRPTDVVLYDDDGNLTSLLPDPNQNRASDESH
A305W6_1112417A305W6_11124171F005040MAVKVFIKPDRRYYQDREGVFRPIENLSITASTPTYPAVLHKTRRTMILADDRSHAVVALDRELVVSRNAELSAVLIAYQEPTPATWEALTRHMEAEDSTAELAREVKSKASIERKRKATEAR*
A305W6_1126565A305W6_11265651F007272DWQKLATRIGAPIYCPGWMPDPLDGRIGSRWNNIFAVDRDRSYLMSWVWQETGPGTAGGELHVNLRGYPGRSRIPTXXXXRLTASGNSRSVKLPCFADPNGHRRAAGIEATLYTVNQDADQWHVLYAWRRGGSLYTLSEHVAPPLTYTKVVANLDRMLRSLVLVRPCLLYTSPSPRD*
A305W6_1128499A305W6_11284991F023390GYILAGVTTTVVAVYATEPLLFIWAFGSIAAAVMSRSLERTLFRPAFVDDADEFLAGQEAVLKKHGLMAVLKAAFHYVTGSRLVLALILLALALQIASRVGDYLVAVVFVQATHNNLQALTILIGNAWLASYVVQLVVSLFVTPLVLSKLGIKNAIMALPIFTLIGFTAVAIAPVLSTAL
A305W6_1181333A305W6_11813331F038277ADGEYTPAKAKAGTRFLGVCPCLGGGALGGDVKASALAARLVYSFPLGNMPSFHIGAXXXXXXXGFGGIALRIDGLVNYLPSNGGKFDFGAQAGLQFSPDIRSMMGGGTMGSGPTMWAPYVWWDQLDAPLPGTVELGGFAQWTFFDKNAGIDNLAIAKDGLGYGGRLGVFLSDPRFELEGDGYY
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