Metagenome / Metatranscriptome Family F093675

Basic Information
Family ID	F093675
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	40 residues
Representative Sequence	MAPFIAIVLSIGILTLLGIAAGFGIDSRPSYGDDHAR
Number of Associated Samples	95
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	31.82 %
% of genes near scaffold ends (potentially truncated)	14.15 %
% of genes from short scaffolds (< 2000 bps)	16.98 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Most Common Taxonomy
Group	Unclassified (79.245 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.698 % of family members)
Environment Ontology (ENVO)	Unclassified (28.302 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.736 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 41.54% β-sheet: 0.00% Coil/Unstructured: 58.46%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF07336	ABATE	29.25
PF11706	zf-CGNR	16.04
PF13545	HTH_Crp_2	0.94
PF08264	Anticodon_1	0.94
PF07676	PD40	0.94
PF12836	HHH_3	0.94
PF03772	Competence	0.94
PF00892	EamA	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG5516	Uncharacterized conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding	General function prediction only [R]	29.25
COG0658	DNA uptake channel protein ComEC, N-terminal domain	Intracellular trafficking, secretion, and vesicular transport [U]	0.94

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
All Organisms	root	All Organisms	20.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
cellular organisms	root	All Organisms → cellular organisms	20.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	20.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	17.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	17.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	10.38 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	79.25 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.38 %

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_102852120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	552	Open in IMG/M
3300004153\|Ga0063455_100486052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	763	Open in IMG/M
3300005444\|Ga0070694_101849880	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	515	Open in IMG/M
3300005445\|Ga0070708_102088313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	524	Open in IMG/M
3300005536\|Ga0070697_100732523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	873	Open in IMG/M
3300005558\|Ga0066698_10360368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1004	Open in IMG/M
3300010142\|Ga0127483_1215463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	528	Open in IMG/M
3300010362\|Ga0126377_10031034	All Organisms → cellular organisms → Bacteria	4515	Open in IMG/M
3300010371\|Ga0134125_10901937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	971	Open in IMG/M
3300010399\|Ga0134127_10169090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2005	Open in IMG/M
3300012208\|Ga0137376_10091451	All Organisms → cellular organisms → Bacteria	2566	Open in IMG/M
3300012212\|Ga0150985_110758727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	895	Open in IMG/M
3300012399\|Ga0134061_1213996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	546	Open in IMG/M
3300012944\|Ga0137410_12031704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	511	Open in IMG/M
3300018054\|Ga0184621_10110554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	978	Open in IMG/M
3300018431\|Ga0066655_10532620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	782	Open in IMG/M
3300020080\|Ga0206350_10341369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	780	Open in IMG/M
3300022195\|Ga0222625_1723134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	528	Open in IMG/M
3300022195\|Ga0222625_1777206	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	557	Open in IMG/M
3300022756\|Ga0222622_11390304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	517	Open in IMG/M
3300025917\|Ga0207660_10000002	All Organisms → cellular organisms → Bacteria	883566	Open in IMG/M
3300030829\|Ga0308203_1013972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	969	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.85%
Host-Associated	Host-Associated	14.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.87%
Aquatic	Environmental → Aquatic	16.98%
Plants	Host-Associated → Plants	14.15%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	68.87%
Freshwater	Environmental → Aquatic → Freshwater	8.49%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.55%
Sediment	Environmental → Aquatic → Sediment	5.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.66%
Marine	Environmental → Aquatic → Marine	2.83%
Roots	Host-Associated → Plants → Roots	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.43%
Loam	Environmental → Terrestrial → Soil → Loam	8.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.55%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.66%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.72%
Ice	Environmental → Aquatic → Freshwater → Ice	2.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.94%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.55%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.60%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.66%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.72%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.89%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.94%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.94%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.70%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	5.66%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.66%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.77%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.77%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.77%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	2.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.83%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	2.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.89%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.89%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.89%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.89%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.89%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.94%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.94%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.94%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.94%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.94%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001330	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-5cm)- 6 month illumina	Environmental	Open in IMG/M
3300004071	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005830	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010142	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012092	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ445A (23.06)	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012399	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012527	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ83 (22.06)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015086	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-5c, rocky medial moraine)	Environmental	Open in IMG/M
3300015162	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)	Environmental	Open in IMG/M
3300015192	Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-2a, rock/snow interface)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015252	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT399_16_10D	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300021859	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.306 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023058	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025947	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqB_D2 (SPAdes)	Environmental	Open in IMG/M
3300027457	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-ROWE17-D (SPAdes)	Environmental	Open in IMG/M
3300027637	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300034652	Metatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_02R_16 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_106324062	3300000891	Soil	MAPIITIILMIGLMTALGIAAVLWGVDSRPSYGDDHAR*
JGI10216J12902_1000338102	3300000956	Soil	MAPIITIVLMVGLLTALGIAAVLWGVDTRPSYGDDHAR*
JGI10216J12902_1065631942	3300000956	Soil	MAPMIAMVLSMGIATALGIFAIQFGADSRPTYGDDHAR*
JGI10216J12902_1107135371	3300000956	Soil	RRCRMAPFIAIVLSIGILTLLGIAAGFGFDSRPSYGDDHAR*
A305W6_10045255	3300001330	Permafrost	MAPFIAIVLSIGIMAAFGIAGAIWGTDSRPSYGDDHAR*
Ga0055486_100851361	3300004071	Natural And Restored Wetlands	RGYGRRCRMAPYIAIVLSIGLLALIGFAAIGWGIDSRPSYSDDHIR*
Ga0062593_1028521202	3300004114	Soil	RGYGRDRRCRMAPFIAMLVSIGITTLFGIAALAFGADSRPSYRDDHAR*
Ga0063455_1004860521	3300004153	Soil	KGLLRDRRCRMAPFIAMLLSIGITTVFGIAALAFGTDSRPTYLDDHAR*
Ga0062589_1017437992	3300004156	Soil	RGYGRERRCRMAPFIAMIMSIGIGTVLGIFALTFGTDSRPTYGDDHAR*
Ga0070683_1001055493	3300005329	Corn Rhizosphere	MTLEGVTRRRCLMAPFIIMIVLSIGLMALFGIAGGSGIDSRPSYGDDHAR*
Ga0070691_101255761	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	RKKTQKGLRERKRRCLMAPLIAMIASIGIASVFGMIAFTFGSDSRPTYGDDHAR*
Ga0070694_1018498801	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	EQPRRGYGTDRRRRMAPFIVMIVSIGITTVFGIAALAFGVDSRPTYGDDHAR*
Ga0070708_1020883131	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	RRCRMAPFIAIILSIGIATLIGIAAAGFGADTRPTYRDDHAR*
Ga0070697_1007325233	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RRCRMAPLIAIILTIGLLIVLGIAAQDWGTDSRPSYGDDHAR*
Ga0066695_101010033	3300005553	Soil	MAPLIAIILTIGILILLGIAAQDWGADSRPTYGDDHAR*
Ga0066698_103603682	3300005558	Soil	MAPFIGIILWIGITIVLGIAAVTFGTDSTPTYGDDHAR*
Ga0068866_109255421	3300005718	Miscanthus Rhizosphere	MAPFIAIILSIGIATLIGIAAAGFGADTRPTYRDDHAR*
Ga0068861_1005105593	3300005719	Switchgrass Rhizosphere	MAPFIAIVLSIGILTLLGIAAGFGIDSRPSYGDDHAR*
Ga0074473_110136002	3300005830	Sediment (Intertidal)	MAPFIAIILTIGLMTLLGVAASVGADSRPSYGDDHTR*
Ga0068858_1022031142	3300005842	Switchgrass Rhizosphere	MAPFIMIVLSIGLLALFGLAAGTGIDSRPSYGDDHAR*
Ga0068860_1013691041	3300005843	Switchgrass Rhizosphere	MAPFIMIVLSIGLLALFGLAAGSGIDSRPSYGDDHAR*
Ga0079222_109508171	3300006755	Agricultural Soil	MAPFIMIVLSIGLMGLLGIASVGWGIDSRPSYGDDHAR*
Ga0075428_1008954481	3300006844	Populus Rhizosphere	MAPIITIVLMVGLLTALGIAAVLWGVDSRPSYGDDHAR*
Ga0079217_104422952	3300006876	Agricultural Soil	MVPFIAIVLSIGILTALGIAAVLWGADSRPTYGDDHAR*
Ga0075426_106837313	3300006903	Populus Rhizosphere	PFIAIVLSIGIMTAFGIAAAIWGTDSRPTYRDDHAR*
Ga0079219_117188572	3300006954	Agricultural Soil	MAPFIMIVLSIGLMALLGFASAGWGTDSRPSYGDDHAR*
Ga0111538_109288063	3300009156	Populus Rhizosphere	REEPKRGYSRDRRCRMAPFIALLLSIGITTVIGMAALTFGADSRPSYSDDHAR*
Ga0126313_117580592	3300009840	Serpentine Soil	MAPFIIMIVLSVGLMALLGIAGGVGIDSRPSYGDDHAR*
Ga0126312_113298171	3300010041	Serpentine Soil	MVAIVSIVLMVGIMSALGIAAGLWGVDSRPSYGDDHAR*
Ga0126311_109839232	3300010045	Serpentine Soil	MIAMILSIGLTTILGFAALTWGVDSRPSIGDDHAR*
Ga0127483_12154631	3300010142	Grasslands Soil	RERRCRMAPLIAIILTIGILILLGIAAQDWGADSRPTYGDDHAR*
Ga0126377_100310343	3300010362	Tropical Forest Soil	MAPYIAILMSIGITTLIGIAALAFGTDSRPTYGDDHAR*
Ga0134125_109019371	3300010371	Terrestrial Soil	MAPFIAIILSIGLTTLIGIAAAGFGADTRPTYRDDHAR*
Ga0134124_101488054	3300010397	Terrestrial Soil	MAPFIAIVLLIGIMSALGIAAAMWGTDSRPTYVDDHAR*
Ga0134127_101665094	3300010399	Terrestrial Soil	MAPFIAIILSIGFATLIGIAAAGFGADTRPTYRDDHAR*
Ga0134127_101690904	3300010399	Terrestrial Soil	TKKRLREKERRCRMASLIFIALMIGIMTSLGIAAVLYGNDSRPSYGDDHAR*
Ga0134127_125394632	3300010399	Terrestrial Soil	MAPIITIVLMVGIMTALGVAATYWGVDSRPSYRDDHAR*
Ga0134122_124740631	3300010400	Terrestrial Soil	MAPFIAIVLSIGILTLLGMLAGFGTDSRPSYGDDHAR*
Ga0137437_12140932	3300011442	Soil	MALFIAIVLLIGIMAAFGIAAAVWGTDSRPSYGDDHAR*
Ga0136621_12352102	3300012092	Polar Desert Sand	MAPFIAIILSMGIMTALGIAAALWGTASRPSYGDDHAR*
Ga0137376_100914514	3300012208	Vadose Zone Soil	MAPLIAIILTIGILILLGIAAQDWGADSRPTYRDDHAR*
Ga0150985_1107587271	3300012212	Avena Fatua Rhizosphere	TQKGLLRDRRCRMAPFIAMLLSIGITTVFGIAALAFGTDSRPTYLDDHAR*
Ga0134061_12139961	3300012399	Grasslands Soil	PRRGYGKERRCRMAPLIAIIFTIGILILLGIAAQDWGADSRPTYGDDHAR*
Ga0136633_12958571	3300012527	Polar Desert Sand	MAPFIAIVLSIGIMTALGIAAFLWGFDSRPTYGDDHTR*
Ga0137396_112577541	3300012918	Vadose Zone Soil	MAPLIAIIMTIGILVLLGIAAQNWGEDSRPTYGDDHAR*
Ga0137410_120317041	3300012944	Vadose Zone Soil	ERRCRMAPLIAIIMTIGILILLGIAAQDWGEDSRPTYGDDHAR*
Ga0164304_113236892	3300012986	Soil	MAPFIAIVLSIGIMTAFGIAAAIWGTDSRPTYGDDHAR*
Ga0163163_128917612	3300014325	Switchgrass Rhizosphere	MAPFMMIVLSIGLLALFGLAAGSGIDSRPSYGDDHAR*
Ga0182000_105629491	3300014487	Soil	MAPIITIVLMVGIMTALGVAAALWGVDSRPSYGDDHAR*
Ga0182008_102366982	3300014497	Rhizosphere	MAPFIIMIVLSIGLMALFGIAGGSGIDSRPSYGDDHAR*
Ga0182008_107341351	3300014497	Rhizosphere	MAPFIAIVLSIGIMSAVGIAAALWGTDSRPSYGDDHAR*
Ga0167655_10064396	3300015086	Glacier Forefield Soil	MAPFIAIVLSIGIMTLLGIAAGIGVDSRPSYGDDHAR*
Ga0167653_10374392	3300015162	Glacier Forefield Soil	MAPFIAIVLLIGIMCALGIAAAMWGTDSRPTYADDHAR*
Ga0167646_10173663	3300015192	Glacier Forefield Soil	MAPFIAIVLSIGILSLLGIFAGFGIDSRPSYGDDHAR*
Ga0137418_107167252	3300015241	Vadose Zone Soil	MAPLIAIIMTIGILILLGIAAQDWGEDSRPTYGDDHAR*
Ga0180075_11042561	3300015252	Soil	MAPFIAIVLLIGIMAAFGIAAAVWGTDSRPSYGDDHAR*
Ga0183260_101197962	3300017787	Polar Desert Sand	MAPFIAIFLSMGIMTALGIAAALWGTDSRPSYGDDHAR
Ga0184621_101105541	3300018054	Groundwater Sediment	MAPFIAVILTIGLLIVLGIAAQDWGTDSRPTYGDDHAR
Ga0184632_101012332	3300018075	Groundwater Sediment	MAPLIAIVLTIGIMTAIGIAALTWGVDTTPSYGDDHAR
Ga0190265_112640092	3300018422	Soil	MAPFIAIVLSMGILTALGIAAVLWGADSRPTYRDDHAR
Ga0190272_104155812	3300018429	Soil	MAPFIAIVLSMGILTALGIAAVLWGADSRPTYGDDHAR
Ga0190272_132468142	3300018429	Soil	MAPFIAIILSMGILTALGIAAVLWGADSRPTYGDDHAR
Ga0066655_105326201	3300018431	Grasslands Soil	LIAIILTIGILILLGIAAQDWGADSRPTYGDDHAR
Ga0190275_102157334	3300018432	Soil	MAPMITIVLMVGLLTALGIAAVLWGVDTRPSYGDDHAR
Ga0066667_109573442	3300018433	Grasslands Soil	MAPLIAIILTIGILILLGIAAQDWGADSRPTYGDDHAR
Ga0190268_110030381	3300018466	Soil	MAPIITIVLIVGLMTALGIAAVLWGVDSRPSYGDDHAR
Ga0190268_116605501	3300018466	Soil	MAPIITIVLMVGLLTALGIAAVLWGVDTRPSYGDDHAR
Ga0190270_111493532	3300018469	Soil	MAPIITIFLIVGLMTALGIAAVLWGVDTRPSYGDDHAR
Ga0190274_127724351	3300018476	Soil	MAPIITIVLMVGLMTALGIAAVLWGVDSRPSYGDDHAR
Ga0184644_15386951	3300019269	Groundwater Sediment	MAPFIAIVLSIGILTLLGMAAGFGIDSRPSYGDDHAR
Ga0190264_109249803	3300019377	Soil	MAPIITIFLIVGLMAALGIAAVLWGVDTRPSYGDDHAR
Ga0190264_120879902	3300019377	Soil	MAPIITIGLILGLMTALGIAAVLWGVDSRPSYGDDHAR
Ga0190267_100213363	3300019767	Soil	MAPIITIVLMVGLMTALGIAAVLWGVDTRPSYGDDHAR
Ga0206350_103413691	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	EPKRGYSRDRRCRMAPFIALLLSIGITTVIGMAALTFGADSRPSYSDDHAR
Ga0179584_14643653	3300021151	Vadose Zone Soil	PRHGLRSEKRRCRMAPFIAFVLSIGILTAFGIAAAIWGTDSRSTYRDDHAR
Ga0193699_104948101	3300021363	Soil	MAPFIAIVLSIGLLTLLGMLAGFGIDSRPSYGDDHAR
Ga0210334_101515933	3300021859	Estuarine	MAPFIAIILTIGLMTLLGVAASVGADSRPSYGDDHTR
Ga0222624_15555711	3300021951	Groundwater Sediment	MAPFIAIVLSIGILTLLGMLAGFGTDSRPSYGDDHAR
Ga0222625_12420043	3300022195	Groundwater Sediment	MAPIITIVLTIGIMTALGTIAALWGVDSRPSYGDDHAR
Ga0222625_14839552	3300022195	Groundwater Sediment	MAPIITIFLIVGLMTALGIAAVLWGVDSRPSYGDDHAR
Ga0222625_17231341	3300022195	Groundwater Sediment	MAPFIAIILTLGILIVLGIAAQDWGADSRPTYGDDHARSSETTST
Ga0222625_17772061	3300022195	Groundwater Sediment	SPRRGYGRERRCRMAPFILMIVPIGILVILGIAALTFGTDSRPTIGDDHAR
Ga0222622_113903042	3300022756	Groundwater Sediment	RRCRMAPFIAVILTIGLLIVLGIAAQDWGTDSRPTYGDDHAR
Ga0193714_10285362	3300023058	Soil	MAPFIAIVLSIGILTAFGIVAAIWGTDSRPTYRDDHAR
Ga0209640_112187971	3300025324	Soil	MAPLITIVLSIGILALFGFAALRWGVDSRPTYRDDHAR
Ga0207660_10000002790	3300025917	Corn Rhizosphere	MAPFIAIILSIGFATLIGIAAAGFGADTRPTYRDDHAR
Ga0207662_112265221	3300025918	Switchgrass Rhizosphere	GGYARRCRMAPFIMIVLSIGLLALFGLAAGSGIDSRPSYGDDHAR
Ga0210067_10142672	3300025947	Natural And Restored Wetlands	MAPYIAIVLSIGLLALIGFAAIGWGIDSRPSYSDDHIR
Ga0207625_1010743	3300027457	Soil	MAPFIAIVLSIGIMIAFGIAAAIWGSDSRPTYGDDHAR
Ga0209818_11963892	3300027637	Agricultural Soil	MVPFIAIVLSIGILTALGIAAVLWGADSRPTYGDDHAR
Ga0268264_121047261	3300028381	Switchgrass Rhizosphere	GLRERKRRCRMAPLIAMIASIGIASVFGMIAYTFGTDSRPTYGDDHAR
Ga0247818_106711962	3300028589	Soil	MAPIITIILMIGLMTALGIAAVLWGVDSRPSYGDDHAR
Ga0307322_101659162	3300028710	Soil	MAPFIAIVLSIGILTLFGIAAGFGIDSRPSYGDDHAR
Ga0307280_100971072	3300028768	Soil	MAPFIAIVLSIGIMVAFGIAGAIWGTDSRPSYGDDHAR
Ga0307282_101798702	3300028784	Soil	MAPFIAIILTIGVLIVLGIAAQDWGADSRPSYGDDHTR
Ga0307296_100318404	3300028819	Soil	MAPFIAVILTIGLLIVLGIVAQDWGTDSRPTYGDDHAR
Ga0307277_100746531	3300028881	Soil	MAPFIAIILTIGILIVLGIAAQDWGTDSRPSYGDD
Ga0307308_102496303	3300028884	Soil	RRGYGRDRRCRMAPFIAIILTIGILIVLGIAAQDWGADSRPTYGDDHARSSETTST
Ga0308203_10139721	3300030829	Soil	RGYGKDRRCRMAPFIAMIASIGIGTVFGILAFTFGTDSRPTYGDDHAR
Ga0307408_1008522172	3300031548	Rhizosphere	MAPFIMIVLSIGLLALIGTAGLGWGSDSRPSYGDDHAR
Ga0310813_123263081	3300031716	Soil	MTLKGVTQRRCRMAPFIIMIVLSIGLMALLGIAGGMGIDSRPSYGDDHAR
Ga0307468_1020680992	3300031740	Hardwood Forest Soil	MAPFIAIVLSIGILTLLGIAAGIGIDSRPSYGDDHAR
Ga0326597_116612982	3300031965	Soil	MAPIIAIVLSIGILTAFGIAAVLWGVDSRPTIGDDHARWAGPSPR
Ga0307416_1012274531	3300032002	Rhizosphere	MAPIITIVLMVGLLTALGMAALLWGVDTRPSYGDDHAR
Ga0307411_105348632	3300032005	Rhizosphere	MAPMIAMVLSMGIATALGIFAIQFGVDSRPTYGDDHTR
Ga0316598_204772_402_515	3300034652	Untreated Peat Soil	MAPFIAIVLSIGILTLLGIAAGIGFDSRPTYVDDHAR

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093675

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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