NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300000269

3300000269: Lotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 7, Mississippi Headwaters



Overview

Basic Information
IMG/M Taxon OID3300000269 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0054941 | Gp0053776 | Ga0011189
Sample NameLotic microbial communities from Mississippi River at two locations in the state of Minnesota, sample from River Site 7, Mississippi Headwaters
Sequencing StatusPermanent Draft
Sequencing CenterUniversity of Minnesota
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size183070581
Sequencing Scaffolds24
Novel Protein Genes26
Associated Families26

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → Viruses → Predicted Viral2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage5
All Organisms → cellular organisms → Bacteria1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes2
Not Available7
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana2
All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameLotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Lotic → Lotic Microbial Communities From Mississippi River At Two Locations In The State Of Minnesota

Alternative Ecosystem Assignments
Environment Ontology (ENVO)freshwater river biome → river → surface water
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationIn downtown Hastings
CoordinatesLat. (o)44.745767Long. (o)-92.85015Alt. (m)N/ADepth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000237Metagenome / Metatranscriptome1498Y
F000311Metagenome / Metatranscriptome1326Y
F000331Metagenome / Metatranscriptome1285Y
F000714Metagenome / Metatranscriptome924Y
F002996Metagenome / Metatranscriptome514Y
F002997Metagenome / Metatranscriptome514Y
F004345Metagenome / Metatranscriptome442Y
F009197Metagenome / Metatranscriptome321Y
F009748Metagenome / Metatranscriptome313Y
F014107Metagenome / Metatranscriptome265Y
F019325Metagenome / Metatranscriptome230Y
F035740Metagenome / Metatranscriptome171N
F036693Metagenome / Metatranscriptome169Y
F047562Metagenome / Metatranscriptome149N
F051875Metagenome / Metatranscriptome143N
F053096Metagenome141Y
F054558Metagenome / Metatranscriptome139N
F060965Metagenome / Metatranscriptome132Y
F067728Metagenome / Metatranscriptome125Y
F069701Metagenome / Metatranscriptome123N
F070024Metagenome / Metatranscriptome123N
F072024Metagenome / Metatranscriptome121Y
F078007Metagenome / Metatranscriptome117N
F079618Metagenome / Metatranscriptome115N
F092060Metagenome107Y
F100394Metagenome102Y

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
M3P_1001924All Organisms → Viruses → Predicted Viral2177Open in IMG/M
M3P_1003236All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes1818Open in IMG/M
M3P_1003324All Organisms → Viruses → Predicted Viral1799Open in IMG/M
M3P_1005631All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1473Open in IMG/M
M3P_1008604All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1249Open in IMG/M
M3P_1010348All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1160Open in IMG/M
M3P_1014071All Organisms → cellular organisms → Bacteria1026Open in IMG/M
M3P_1014701All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Acidovorax1008Open in IMG/M
M3P_1017915All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes930Open in IMG/M
M3P_1019953All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales888Open in IMG/M
M3P_1027538Not Available778Open in IMG/M
M3P_1029994All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage752Open in IMG/M
M3P_1031838All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage733Open in IMG/M
M3P_1047963All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana618Open in IMG/M
M3P_1052822Not Available594Open in IMG/M
M3P_1053630Not Available591Open in IMG/M
M3P_1053911All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes589Open in IMG/M
M3P_1054270Not Available588Open in IMG/M
M3P_1060877All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana560Open in IMG/M
M3P_1064861All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Fabales → Fabaceae → Papilionoideae → 50 kb inversion clade → genistoids sensu lato → core genistoids → Genisteae → Lupinus → Lupinus albus545Open in IMG/M
M3P_1072345All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage521Open in IMG/M
M3P_1073806Not Available517Open in IMG/M
M3P_1075246Not Available512Open in IMG/M
M3P_1078169Not Available504Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
M3P_1001924M3P_10019243F067728MARIEKPTVTAFKVQLTEYERGWGSKPWDTLYFDNEAEAKQYAIDYNKEHNTAASAPDWYVRADYAGKVS*
M3P_1003236M3P_10032361F078007MATKKAFKPCEGCPTPAKCKAAGKCMAKEGKGGKDALVIMVGVGKPMKAKKK*
M3P_1003324M3P_10033241F004345KEQHMNIEQVIVAATGIGYLVVGVLQWSKGELSNGMIWTGYAFAQIGLWLNIK*
M3P_1005631M3P_10056313F069701VRVLFQLTKPTPKTCARSSEVLDQQIDGTARQQQWQSQIHKHPPHHPQSQVGLFQTMSHHGLILFALAVGFEHVEILEA*
M3P_1008604M3P_10086042F092060MRLITKKNGIEIWAQFDQSAQVYELFFDNEGQTYTGWAVDSIKDAQIASVFIIQEQLS*
M3P_1010348M3P_10103485F036693MKTQYNKPKNLVAKDLRTPKYRMRVVDSKIAFTRKPKHKKDLYEQP*
M3P_1014071M3P_10140713F051875SKFSPIPIYLKNYARQLLSFYSISQVASTLSVSRSFLYNIQKDQNFSLDRKNQQTSGTESLNFIPFNFADPNHPQKNQLINPAPPLNFTCEMIKPNGIRLIIHTSDPTSIINTFLCSN*
M3P_1014701M3P_10147011F070024GSVAVLLAHENLLENQRVKNFAFRMLIKDWMLEQYCNGIVSASK*
M3P_1017915M3P_10179152F002997MAIARFENININNLTFGKSDFGEQSTTQTLWFATRARVAAVANSLKIADKYRLYQDMTTFTLNYTRNMKTIMDSQDLYSITWRGKDWRIDNVRESDDRMTVLFTCYRSDPVTAV*
M3P_1019953M3P_10199531F079618VAFFFMMRCIQFIQTYSGNLSTSFDSSELLAVQALCHQLGSQNALLVQIAWLQISSFAQYSGHEFRWTSLLWI*
M3P_1027538M3P_10275382F035740MKRVLLALSLLISTLVITPEAVAAKRPCSALKTDIQQMLDAKYTGSEADAPQEYARRVVKAYQMGFVNKNCLTSKEYNGLLTGVTQLRDDCSKARLDKSSWADVAKRCNIYKGLYKYVKVAP*
M3P_1029994M3P_10299941F053096MTKYTGPAKPIHTHVELISDRAERIIFLLFAIFIAVYLYLE*
M3P_1031838M3P_10318382F009748VDATPFSAVGTLLRVGDVQRDIKSTSNDTSVSLTGIDTAMLGFVLGNTVKGSYIQMWHGFFDTNGALITTGGTGGLYQFFSGYITSFSIQENWMEEARSFVGTIQIGASSTQLTLQNTDAGRYTNDDSWQFFNPGDTSMNRVSFIETIAYQFGKPE*
M3P_1039096M3P_10390961F000237LMVLHYFTP*YYLYLVKLHALFCHES*DSDSGENVYEDKSGSYVS*FYDAFLKEIQDA*Y*TSLVFVYFFMHHFNGGPVNYFFFER*NISEMDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FILLAALPVIYNLYNSNNNYFSVIPMQSSKLQSFCFMIFMLSMYCTASMLPCGRYYYAPEGGYVGNP*VKFSYQYCYLYLG*IVHHLDLIEHHCF
M3P_1047963M3P_10479631F002996QFSAKSKNTRSDHAVVPDLSDSSGLYVKNKTIRVLLDSGSSGDLLFLKKGSSKRISVVKRDVPQSWGTSNGTFNTNKVGDIEISFVEYSASKKVRLQPDIVEYSPGEQAPMYDLIIGKQTMHDLGVVLDFQEKTITIDEILLPMRNIVNLQLKPRITRALRENSCFAQEPISTRNATKRVVEILDAKYEKADLPAIIRENCSHLTA
M3P_1052822M3P_10528221F072024STSQNCGISYFIFDDIASLAGSADAQNVDPDILKEICKGLKDENPYCADLRFLGVEARARAEGITVIPRMVDQVQHFDVCSVVNNRQTGEMKLQVRTHTNSVSDVNMDSEKVEGLCFPLLFPHGEPGYTNASKSGMSPDEYAMSRLMMPEKIGRDFMTARAQYAPVECVDSRTGQAFAPTEDQSEIEEHQVQGASIFP
M3P_1053630M3P_10536301F000714VTYKVIKGYSDPEFTTSKVTSLEWDLHNGRQSQKRVGLLESNINTVKNIISEAYADSDDQDTLRSIAEALSIELTRTVEFTATIEVSGTIDLNLLEDYDFETEITDNLYVDSQSGNIEIGDTEICYVREA*
M3P_1053630M3P_10536302F000311MYFELTAPSQVAFARATWEAEMIGLDPMTIAPLTFNIGTGSIEKVSRIRDKYNLVESYTSDYEPTG
M3P_1053911M3P_10539111F014107MSLNTILSIAESVTINDHRFVGQTVSRNQKILTSEIITVVPFQFTLRPMNYLLYSQSRSILNALRIPDKALEQYLNFGSTGWLNYIKYQGDMTSAQIAACRWQTSSANKILVLGSLPSISSGSYLFRIGDFVQVDRYTYIVTADVLRGAGATVNVPVHRNLIATLA
M3P_1054270M3P_10542701F054558NQVLQVALAYLRTELGFTGSTSSVDSNFVGHSADGKSKHTDGQVWGSLNWPRRLAIDVSVVNPTAVSHSGAGACGESFLNPNAGTRAAEETKTKKYKRLCEQRGMDFVPIVFTTSGGMGEQFQRRYWNPHWIRVAEEDEAMKIGPWVARKRKAFWEARFAVAVANCNASMISRSQHITD*
M3P_1060877M3P_10608771F000331ADFLNDAAWAVRSTYHTVLKASPGAAIFGRDMLFDVPFLADWNKVGDYRQRQTDRNTARENKTRVEWDYAVGDKVLVRKEGILRKSESKYEKEPWTVSQVHTNGTIRIQRGTKSERLNIRRVTPFFEEITS*
M3P_1064861M3P_10648611F060965GILTPAIRAIRYSSINNVLTLALFMTRLGANYTNDALALDDLAVTADPLH*
M3P_1072345M3P_10723451F100394MKIYLNGTANLGDFLNGLPVMSGISKSYGKYDLIIKHEMKKFKGLKEFLMYQDIFSSVEFDDDLFFSGAINMSSWPMREDKNDPNRPI
M3P_1073806M3P_10738061F047562MPAVCPGSPLSDASCATPDKTRLHRGSPALSAPYLVFAKCLLVSSLLAVSGCVTNESAPVASDDVIGDYDNACLPEAVMMAQALRRHGIKARVLIMSGDGWSHAVTAYQYPTEKGRIWCWDSDEQSVPVSARWSDSE
M3P_1075246M3P_10752461F009197VCDPVSPVMVTVDPAARSKSAVSATVNVLVAPDPGVLCRIDFRLKLGTTTLSGSVPLATPYSAAPSFVIAADAIEPTLLPPPSLISADTLTAGDACDEFPFVKLNVTSHAVPDAFTEPAAVNTSCPDACVHVPLVPSRPDVEDTLKLALSSVCDPVSPVMVTVDPAARSK
M3P_1078169M3P_10781691F019325MTQLNETLFSTIVHDFHNGGVKSSYGLSAYDRKAMVKYLISSPACYCIDCVCEATHTA*
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