NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 2236876020

2236876020: Tailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC:



Overview

Basic Information
IMG/M Taxon OID2236876020 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0047444 | Gp0052798 | Ga0011267
Sample NameTailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC:
Sequencing StatusPermanent Draft
Sequencing CenterMcGill University
Published?Y
Use PolicyOpen

Dataset Contents
Total Genome Size124936635
Sequencing Scaffolds11
Novel Protein Genes11
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0092
Not Available3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales1
All Organisms → Viruses → Predicted Viral1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → Desulfatitalea tepidiphila1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Chroococcaceae → Geminocystis → Geminocystis herdmanii1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameHydrocarbon Resource Environments Microbial Communities From Canada And Usa
TypeEngineered
TaxonomyEngineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments → Hydrocarbon Resource Environments Microbial Communities From Canada And Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)Free-living → Non-saline → Water (non-saline)

Location Information
LocationUSA: Maryland: Natonal Institute of Health
CoordinatesLat. (o)39.0042816Long. (o)-77.1012173Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004383Metagenome / Metatranscriptome440Y
F011593Metagenome / Metatranscriptome289Y
F021795Metagenome / Metatranscriptome217Y
F036301Metagenome / Metatranscriptome170Y
F043480Metagenome / Metatranscriptome156Y
F055749Metagenome / Metatranscriptome138N
F064744Metagenome / Metatranscriptome128Y
F064746Metagenome / Metatranscriptome128N
F091989Metagenome / Metatranscriptome107Y
F104571Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
2244389805All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin00911296Open in IMG/M
2244390288All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon ADurb.Bin0093744Open in IMG/M
2244390822Not Available2596Open in IMG/M
2244391222All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.2159Open in IMG/M
2244392223All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales1603Open in IMG/M
2244392524All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanotrichales → Methanotrichaceae → Methanothrix → unclassified Methanothrix → Methanothrix sp.1500Open in IMG/M
2244392855All Organisms → Viruses → Predicted Viral1410Open in IMG/M
2244395235Not Available1025Open in IMG/M
2244396769Not Available872Open in IMG/M
2244412898All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatitalea → Desulfatitalea tepidiphila515Open in IMG/M
2244414647All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Chroococcales → Chroococcaceae → Geminocystis → Geminocystis herdmanii511Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
22443898052244004451F055749MNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPDVGDTSEWNTTNNPDLPSGASMWTQLGPLLVLAVLAMVIGLVIMYFRN
22443902882244007666F055749VPGSNNPMNLIIAIAIGILTLIAVFSVIPVVGGSIDNAMPALDEGSEWNTTTNPDLPSGATMWTQIGPLLVLAVLAMVIGLVIMYFRN
22443908222244009874F004383MPWNPCQDCPGDEGGCMEHPAECGVAKRPPTEQGIQISTDNLLERAFMASIRSEEYAADLRVLQQEFDKRPDVIDLKRRIDQCEHERKTCIDQAREAGISKQGPFILKVRTRKTRTVLPEKFFARFGTETFVACSTIAIGKAEAAVGKGTFDDCCEIEVKETGVSVEYVRPEGRA
22443912222244011211F064746MAKISLIIFLGICAVLVCGCLDTAAEQKSVMIDGYTFTASLNDKWVNSSGDVSKYKPADLEDQFGIPDGAYDWTGFADYSAFDYRSGEPSGSITKAGWAHIFVLKPDEDLADNSSIDILKHAAYMIINPKDHRNAVIGGDLTEKEIEYNGRQAYYIEVEGELITPENYHTFINDNSLGAIAFFLDDDTVALIDVETTNDFGMSAWDVINSITVN
22443922232244013983F043480MNKILFMVGLSIALAAAALLFLNIIESGVAAIIGIIGLGLIAVSR
22443925242244014717F091989MKLSTYARDITNRARANCYATDATRASDPLIRPFGEFDELQATLKSLQGTTMALCWVNSEGKAVPFNEAEFNAVQKEIADLQGKINHNTKILDALDAKVAKLGLTEPSIGKLKAQKEKLREQINQIRAEEKDSLANKWQAVVTLGGNRGMYDALPEVQEARAKAAAQIEPIEAQILALDRQIRDLESILSKFKK
22443928552244015490F104571FTDDFKISDNAGLFVQPATVNYETGETKEYNLFRKDNGAWVTGAKAYVNTGDYQLTIKPIVGNGNGKVLLFLQTSLPKIIHGENYQALNNDETVQAIDAIADDLQDRGVGVNLQECKTSRIDVFRTAIADNPFSSYAPVFRLLNAKRSHTTDYGTTFTWANTQREICVYDKAVEMQNRGVKSSALPTNAIRFEYRLKTSRVCKNETGAGNVRELVNNLDNLQDVYRQALENSIFSLDAQALATVTANELENGLRVYAKRYGGAFVNRFFRDFGAYALGRLTGVETVKSVLSSVLGDRYKLWRHSKLFDEYRMNFEMARGGLGDNTLKDFYLELKEKILPDNRCETGDLASV
22443952352244020412F011593VTDNNLSAPEWCLGCPDPIYDDRRGEWDWYCRQHSPTGIRCSNVAVLRERCYRVRDYFSNREAST
22443967692244023179F064744MAMEVIDGAYQLLLARLLAIEADMAVLRERVEELEDELHETWMGGTD
22444128982244045691F021795NIHQCYL*RVKGMKKEADRIRRWRERQKAEGKSSFTILLSQEAREFLAEEKEKTGESYAVIVEKALHTLKKQGYRPPVLKHFPKREDVTARAAAREHHPPVTAVTIHDKGAQPRILIDDL
22444146472244048168F036301VVTSLPLSRRFIPRAIYHSRNHIQEETRMLRSTKILIHDERPDSPEFLLEIVVDRGYKAGFAKDGNEIIAMLSNDQYDVVLTNGGYGELNPDQYMQIQSSSVFIIDIADSHTQNHTRDVKADLYLSRPLLISELWKSLEKPF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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