NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Sample 2043231002

2043231002: 10 m water depth



Overview

Basic Information
IMG/M Taxon OID2043231002 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0045617 | Gp0051643 | Ga0011082
Sample Name10 m water depth
Sequencing StatusPermanent Draft
Sequencing CenterSoedertoern University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size49057896
Sequencing Scaffolds9
Novel Protein Genes11
Associated Families10

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → SAR92 clade → SAR92 bacterium BACL16 MAG-120619-bin481
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani3
Not Available2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae2

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Microbial Communities From The Landsort Deep, Baltic Sea
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Landsort Deep, Baltic Sea

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → marine water body → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationSweden
CoordinatesLat. (o)58.58333333Long. (o)18.23333333Alt. (m)N/ADepth (m)10
Location on Map
Zoom:    Powered by OpenStreetMap ©


Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000155Metagenome / Metatranscriptome1877Y
F003495Metagenome / Metatranscriptome483Y
F022076Metagenome / Metatranscriptome216Y
F028308Metagenome192N
F028500Metagenome / Metatranscriptome191Y
F034341Metagenome / Metatranscriptome175Y
F058172Metagenome / Metatranscriptome135Y
F080513Metagenome / Metatranscriptome115N
F083611Metagenome / Metatranscriptome112Y
F105247Metagenome / Metatranscriptome100N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Landsort10m_GCH9ZVC01BOC1KAll Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium516Open in IMG/M
Landsort10m_GCH9ZVC01BQMM8All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → SAR92 clade → SAR92 bacterium BACL16 MAG-120619-bin48505Open in IMG/M
Landsort10m_GCH9ZVC01C1A81All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani557Open in IMG/M
Landsort10m_GCH9ZVC01DHGMNNot Available513Open in IMG/M
Landsort10m_GCH9ZVC01DII1CAll Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani530Open in IMG/M
Landsort10m_GCH9ZVC02H6MOVNot Available514Open in IMG/M
Landsort10m_GCH9ZVC02H6UFRAll Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae502Open in IMG/M
Landsort10m_GCH9ZVC02HZY1XAll Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae502Open in IMG/M
Landsort10m_GCH9ZVC02IHJXTAll Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium rassoulzadegani528Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Landsort10m_GCH9ZVC01BOC1K10m_449410F105247MKFAVACLIASTSAISLADAPPYFNEPTWRETYPSAAGLVQTSACEKSGQAGVLCENNLFATGMNGDEDLGQNIIMKGDKFHYN
Landsort10m_GCH9ZVC01BQMM810m_224240F080513LWLYQLTDQDLLQLYALFTPNDIIREFKPRKSEKRKIYLQPNSKYRLDRPIQARKYLERIILAACPEEIGFEDWEKVYEQKIEYVRAEALSRLWKRIGKHESLWAEE
Landsort10m_GCH9ZVC01BXEZ010m_127620F000155MKFAVALIATVAANRYENMNEDELLVNLSSTLSSALDSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP
Landsort10m_GCH9ZVC01C1A8110m_837130F034341MELYSNENNFNIFYEKKRKELKNLQTLNEFVKPNPYFVYFMFKDTIHVDDYGSIKETLFKFPTLNKVSSIFQ
Landsort10m_GCH9ZVC01COLR610m_561160F028308MQTLNNSWSNYLNNYEWTHTATVRLHYKISELSVDKITTSLVKYKPINYLFYCLENDRYDINHIHLLLNATLTVDRDNIAKGLGKYSKSVSYFDEVKSNKAISWYCSKQLNQNIPMT
Landsort10m_GCH9ZVC01DHGMN10m_1179750F083611MSGKKARARKKKSQRRRDAAAGEEFAGLPDHLVVEHVLRSEHFDDPADLARLPAVSRAMRDAVTGTGLTFEELGEDE
Landsort10m_GCH9ZVC01DII1C10m_1419330F022076YIHTINNIYDKNLLIKQPVIIKPRREHDPYEMNEIKGTRMPDYSGISKDRDIYGELGWIPNFNVKCAKNNDARHVTNREYFDGPMNYHVTFNNSTMTNSEFFR
Landsort10m_GCH9ZVC02H6MOV10m_829000F028500MMYEIRTKWTNLIVYRTTERANAVYWLEENNQEGVFKLVRVK
Landsort10m_GCH9ZVC02H6UFR10m_1587050F003495MKENNEKKMKNEDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGT
Landsort10m_GCH9ZVC02HZY1X10m_582530F003495MEEKYFWQDNEDEISKLIKAFPKDIAALDKRSVLAKVNSQGSGT
Landsort10m_GCH9ZVC02IHJXT10m_1056290F058172MGTEVRVGEDKPKYDFYENALFLDDPQEADLSRKARCLAPKIGTQPRFASNNL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.