| Basic Information | |
|---|---|
| Taxon OID | 3300027773 Open in IMG/M |
| Scaffold ID | Ga0209810_1000015 Open in IMG/M |
| Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 608252 |
| Total Scaffold Genes | 662 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 404 (61.03%) |
| Novel Protein Genes | 9 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
| Associated Families | 9 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Centralia | |||||||
| Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002509 | Metagenome / Metatranscriptome | 553 | Y |
| F002755 | Metagenome / Metatranscriptome | 532 | Y |
| F002992 | Metagenome / Metatranscriptome | 515 | Y |
| F003246 | Metagenome / Metatranscriptome | 498 | Y |
| F004297 | Metagenome / Metatranscriptome | 445 | Y |
| F004844 | Metagenome / Metatranscriptome | 421 | Y |
| F007034 | Metagenome / Metatranscriptome | 359 | Y |
| F010130 | Metagenome / Metatranscriptome | 308 | Y |
| F014125 | Metagenome / Metatranscriptome | 265 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209810_1000015207 | F010130 | N/A | VRNAELAPAFCVALAVELAHLRWIVLTQWKCRTCREPHIDCACKPAWVRYFL |
| Ga0209810_1000015291 | F002509 | GAG | VVTHLSHWLTRQLGNDELRRKLEDVDVDELPPAGRDMVRELVQELGVAVPGERGQLEVLVRETVETLVYGE |
| Ga0209810_1000015349 | F004297 | GGA | MWTGLYAGLGAASTMVSRRLASKIWRVMTGEEPPTKK |
| Ga0209810_1000015410 | F014125 | GAG | VQPEFTLVGDDRIIGSTIWTDEDGRRTERYQVLTIRDGKIVDLQGCETRRQAERFARRRATARTSGAV |
| Ga0209810_1000015411 | F007034 | N/A | MEAILDQLRAAADALSRGDPRPFASLLADDAEWRGVPSGHLWWKRTPS |
| Ga0209810_1000015502 | F003246 | AGG | VTSSTRDTWSAAEAVAGLLAACAIVLGLLELVYRPFRLAPVALLLALIATVMSRSQQRLVMTAFAAIGICFVVGTALQVLTHHPLF |
| Ga0209810_1000015546 | F004844 | N/A | MHTMSRSGGRLSVFLFALFLLAFFLAVTFAAGYAVGKILL |
| Ga0209810_1000015563 | F002992 | N/A | MSLRTSPIVEHAALPGGGSVTVWVGVPDDPYIDDKSQLTTVDVQLHEGNNVVASMSTVLDPHQTSEGRQLAREVKAALEAGEIGLHAEDLEPFADRVR |
| Ga0209810_1000015623 | F002755 | AGAAGG | MPRRSAVTGLLLAAGSVAGSVLVRRRAARRRERVDLYGDDGSVQSYAEGSPEADRLLPIARELLSTAPR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |