Metagenome / Metatranscriptome Family F059360

Basic Information
Family ID	F059360
Family Type	Metagenome / Metatranscriptome
Number of Sequences	134
Average Sequence Length	49 residues
Representative Sequence	MTLFKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNISYMLKFKA
Number of Associated Samples	117
Number of Associated Scaffolds	134

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.82 %
% of genes near scaffold ends (potentially truncated)	18.66 %
% of genes from short scaffolds (< 2000 bps)	61.19 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Most Common Taxonomy
Group	Unclassified (58.209 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (22.556 % of family members)
Environment Ontology (ENVO)	Unclassified (42.537 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (72.388 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.58% β-sheet: 0.00% Coil/Unstructured: 68.42%
Feature Viewer

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Pfam ID	Name	% Frequency in 134 Family Scaffolds
PF00499	Oxidored_q3	8.21
PF00119	ATP-synt_A	2.99
PF00361	Proton_antipo_M	1.49
PF13655	RVT_N	1.49
PF00338	Ribosomal_S10	1.49
PF13631	Cytochrom_B_N_2	0.75
PF00384	Molybdopterin	0.75
PF00164	Ribosom_S12_S23	0.75
PF02790	COX2_TM	0.75
PF03947	Ribosomal_L2_C	0.75
PF00510	COX3	0.75
PF01479	S4	0.75
PF00078	RVT_1	0.75
PF00115	COX1	0.75
PF00146	NADHdh	0.75

COG ID	Name	Functional Category	% Frequency in 134 Family Scaffolds
COG0839	NADH:ubiquinone oxidoreductase subunit 6 (chain J)	Energy production and conversion [C]	8.21
COG0356	FoF1-type ATP synthase, membrane subunit a	Energy production and conversion [C]	2.99
COG0051	Ribosomal protein S10	Translation, ribosomal structure and biogenesis [J]	1.49
COG0090	Ribosomal protein L2	Translation, ribosomal structure and biogenesis [J]	0.75
COG0650	Formate hydrogenlyase subunit HyfC	Energy production and conversion [C]	0.75
COG1005	NADH:ubiquinone oxidoreductase subunit 1 (chain H)	Energy production and conversion [C]	0.75
COG1622	Heme/copper-type cytochrome/quinol oxidase, subunit 2	Energy production and conversion [C]	0.75
COG1845	Heme/copper-type cytochrome/quinol oxidase, subunit 3	Energy production and conversion [C]	0.75

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
All Organisms	root	All Organisms	41.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
cellular organisms	root	All Organisms → cellular organisms	41.79 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	21.64 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	20.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	18.66 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	12.69 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	3.73 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
Stramenopiles	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles	18.66 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6.72 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.48 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3.73 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
Ochrophyta	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta	18.66 %
Vibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales	3.73 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	3.73 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	2.24 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.75 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
Bacillariophyta	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	18.66 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	3.73 %
Rickettsiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae	2.99 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	1.49 %
Trebouxiophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae	0.75 %
Yersiniaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae	0.75 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
Vibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio	2.99 %
Rickettsieae	tribe	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae	2.99 %
Mediophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae	0.75 %
Photobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium	0.75 %
Yersinia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae → Yersinia	0.75 %
Shigella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Shigella	0.75 %
Heliobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae	0.75 %
Chlorellales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales	0.75 %
Bacillariophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae	0.75 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	0.75 %
Escherichia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
Rickettsia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia	2.99 %
Vibrio cyclitrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cyclitrophicus	2.99 %
Heliomicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae → Heliomicrobium	0.75 %
Yersinia pseudotuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae → Yersinia → Yersinia pseudotuberculosis complex	0.75 %
Photobacterium profundum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium → Photobacterium profundum	0.75 %
Shigella flexneri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Shigella → Shigella flexneri	0.75 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.75 %
Chlorellaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae	0.75 %
Bacillariophycidae	clade	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae	0.75 %
Biddulphiophycidae	subclass	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae	0.75 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
typhus group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → typhus group	2.99 %
Vibrio cyclitrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cyclitrophicus	2.99 %
Auxenochlorella	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Auxenochlorella	0.75 %
Naviculales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales	0.75 %
Yersinia pestis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae → Yersinia → Yersinia pseudotuberculosis complex → Yersinia pestis	0.75 %
Heliomicrobium modesticaldum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae → Heliomicrobium → Heliomicrobium modesticaldum	0.75 %
Eupodiscales	order	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales	0.75 %
Photobacterium profundum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium → Photobacterium profundum	0.75 %
Shigella flexneri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Shigella → Shigella flexneri	0.75 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.75 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
Rickettsia prowazekii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → typhus group → Rickettsia prowazekii	2.99 %
Vibrio cyclitrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cyclitrophicus	2.99 %
Amphipleuraceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Amphipleuraceae	0.75 %
Odontellaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Odontellaceae	0.75 %
Auxenochlorella protothecoides	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Auxenochlorella → Auxenochlorella protothecoides	0.75 %
Yersinia pestis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae → Yersinia → Yersinia pseudotuberculosis complex → Yersinia pestis	0.75 %
Heliomicrobium modesticaldum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae → Heliomicrobium → Heliomicrobium modesticaldum	0.75 %
Photobacterium profundum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium → Photobacterium profundum	0.75 %
Shigella flexneri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Shigella → Shigella flexneri	0.75 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.75 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
Rickettsia prowazekii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → typhus group → Rickettsia prowazekii	2.99 %
Vibrio cyclitrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cyclitrophicus	2.99 %
Halamphora	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Amphipleuraceae → Halamphora	0.75 %
Odontella	genus	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Odontellaceae → Odontella	0.75 %
Auxenochlorella protothecoides	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Auxenochlorella → Auxenochlorella protothecoides	0.75 %
Yersinia pestis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae → Yersinia → Yersinia pseudotuberculosis complex → Yersinia pestis	0.75 %
Heliomicrobium modesticaldum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae → Heliomicrobium → Heliomicrobium modesticaldum	0.75 %
Photobacterium profundum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium → Photobacterium profundum	0.75 %
Shigella flexneri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Shigella → Shigella flexneri	0.75 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.75 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	0.75 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	58.21 %
Rickettsia prowazekii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → typhus group → Rickettsia prowazekii	2.99 %
Vibrio cyclitrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cyclitrophicus	2.99 %
Odontella aurita	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Odontellaceae → Odontella → Odontella aurita	0.75 %
Halamphora calidilacuna	species	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Amphipleuraceae → Halamphora → Halamphora calidilacuna	0.75 %
Auxenochlorella protothecoides	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Auxenochlorella → Auxenochlorella protothecoides	0.75 %
Yersinia pestis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae → Yersinia → Yersinia pseudotuberculosis complex → Yersinia pestis	0.75 %
Heliomicrobium modesticaldum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae → Heliomicrobium → Heliomicrobium modesticaldum	0.75 %
Photobacterium profundum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium → Photobacterium profundum	0.75 %
Shigella flexneri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Shigella → Shigella flexneri	0.75 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	0.75 %
Coscinodiscophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	0.75 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000853\|NpTDRAFT_100963	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Trebouxiophyceae → Chlorellales → Chlorellaceae → Auxenochlorella → Auxenochlorella protothecoides	1294	Open in IMG/M
3300000860\|BpTDRAFT_101003	Not Available	1426	Open in IMG/M
3300000864\|OpTDRAFT_1000321	Not Available	530	Open in IMG/M
3300001344\|JGI20152J14361_10001287	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	16687	Open in IMG/M
3300002153\|JGI24540J26637_10061744	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300002447\|JGI24768J34885_10317390	Not Available	522	Open in IMG/M
3300002835\|B570J40625_100001304	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	45689	Open in IMG/M
3300003549\|Ga0008452J51689_100386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1182	Open in IMG/M
3300003553\|Ga0008454J51686_101042	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1110	Open in IMG/M
3300003554\|Ga0008451J51688_100540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1243	Open in IMG/M
3300003555\|Ga0008453J51685_103060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Heliobacteriaceae → Heliomicrobium → Heliomicrobium modesticaldum	1193	Open in IMG/M
3300003566\|Ga0008455J51687_1000544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1034	Open in IMG/M
3300003682\|Ga0008456_1002570	Not Available	692	Open in IMG/M
3300003683\|Ga0008459J53047_1006408	All Organisms → cellular organisms → Bacteria	777	Open in IMG/M
3300003712\|Ga0008276_101784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Photobacterium → Photobacterium profundum	1612	Open in IMG/M
3300003713\|Ga0008274_101842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Yersiniaceae → Yersinia → Yersinia pseudotuberculosis complex → Yersinia pestis	1463	Open in IMG/M
3300003910\|JGI26437J51864_10000067	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	28481	Open in IMG/M
3300004595\|Ga0008278_1016845	Not Available	1173	Open in IMG/M
3300004763\|Ga0007746_1000825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1641	Open in IMG/M
3300004767\|Ga0007750_1530063	Not Available	1240	Open in IMG/M
3300004836\|Ga0007759_11436415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cyclitrophicus	759	Open in IMG/M
3300005528\|Ga0068872_10335042	Not Available	833	Open in IMG/M
3300005827\|Ga0074478_1126941	Not Available	818	Open in IMG/M
3300005837\|Ga0078893_10141167	All Organisms → cellular organisms → Bacteria	7209	Open in IMG/M
3300005989\|Ga0075154_10103968	Not Available	1688	Open in IMG/M
3300006164\|Ga0075441_10061815	All Organisms → cellular organisms → Bacteria → Proteobacteria	1470	Open in IMG/M
3300006355\|Ga0075501_1031264	Not Available	848	Open in IMG/M
3300006355\|Ga0075501_1059245	Not Available	936	Open in IMG/M
3300006356\|Ga0075487_1006289	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300006356\|Ga0075487_1053176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cyclitrophicus	886	Open in IMG/M
3300006356\|Ga0075487_1070310	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300006356\|Ga0075487_1087842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cyclitrophicus	929	Open in IMG/M
3300006356\|Ga0075487_1087960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	807	Open in IMG/M
3300006357\|Ga0075502_1146615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae → Vibrio → Vibrio cyclitrophicus	962	Open in IMG/M
3300006357\|Ga0075502_1165691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Shigella → Shigella flexneri	1060	Open in IMG/M
3300006357\|Ga0075502_1179140	Not Available	1387	Open in IMG/M
3300006357\|Ga0075502_1695192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	1538	Open in IMG/M
3300006372\|Ga0075489_1016005	Not Available	929	Open in IMG/M
3300006373\|Ga0075483_1009478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → typhus group → Rickettsia prowazekii	731	Open in IMG/M
3300006378\|Ga0075498_1043902	Not Available	1176	Open in IMG/M
3300006379\|Ga0075513_1056999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → typhus group → Rickettsia prowazekii	1293	Open in IMG/M
3300006379\|Ga0075513_1404714	Not Available	922	Open in IMG/M
3300006396\|Ga0075493_1065244	Not Available	1695	Open in IMG/M
3300006397\|Ga0075488_1011494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → typhus group → Rickettsia prowazekii	750	Open in IMG/M
3300006397\|Ga0075488_1033090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → Rickettsiaceae → Rickettsieae → Rickettsia → typhus group → Rickettsia prowazekii	920	Open in IMG/M
3300006399\|Ga0075495_1074515	Not Available	1217	Open in IMG/M
3300006803\|Ga0075467_10496741	All Organisms → cellular organisms → Bacteria → Proteobacteria	628	Open in IMG/M
3300006850\|Ga0075491_1070720	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300006850\|Ga0075491_1549493	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300006917\|Ga0075472_10004307	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	5884	Open in IMG/M
3300007333\|Ga0079270_1365519	Not Available	1525	Open in IMG/M
3300007553\|Ga0102819_1087454	Not Available	528	Open in IMG/M
3300007600\|Ga0102920_1014038	Not Available	2360	Open in IMG/M
3300007667\|Ga0102910_1022091	Not Available	1435	Open in IMG/M
3300007706\|Ga0102899_1005149	Not Available	3100	Open in IMG/M
3300007861\|Ga0105736_1021913	Not Available	1173	Open in IMG/M
3300007953\|Ga0105738_1023283	Not Available	894	Open in IMG/M
3300007981\|Ga0102904_1036115	Not Available	1117	Open in IMG/M
3300008259\|Ga0114841_1009556	Not Available	5198	Open in IMG/M
3300009033\|Ga0102956_1006647	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Mediophyceae → Biddulphiophycidae → Eupodiscales → Odontellaceae → Odontella → Odontella aurita	3555	Open in IMG/M
3300009080\|Ga0102815_10000842	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	19746	Open in IMG/M
3300009086\|Ga0102812_10020731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3796	Open in IMG/M
3300009086\|Ga0102812_10506280	Not Available	660	Open in IMG/M
3300009170\|Ga0105096_10005551	Not Available	5884	Open in IMG/M
3300009436\|Ga0115008_10143865	Not Available	1739	Open in IMG/M
3300009526\|Ga0115004_10559197	Not Available	678	Open in IMG/M
3300010307\|Ga0129319_1126163	Not Available	981	Open in IMG/M
3300010316\|Ga0136655_1002841	Not Available	7275	Open in IMG/M
3300012414\|Ga0138264_1568714	Not Available	1432	Open in IMG/M
3300012414\|Ga0138264_1833368	Not Available	1367	Open in IMG/M
3300012753\|Ga0157548_1140224	Not Available	1394	Open in IMG/M
3300013108\|Ga0171648_101020	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	14235	Open in IMG/M
3300017105\|Ga0186515_104997	Not Available	1408	Open in IMG/M
3300017245\|Ga0186442_114397	Not Available	1094	Open in IMG/M
3300017773\|Ga0181386_1172259	Not Available	657	Open in IMG/M
3300019707\|Ga0193989_1024126	Not Available	680	Open in IMG/M
3300019711\|Ga0193993_1000831	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2225	Open in IMG/M
3300019716\|Ga0193984_1021199	Not Available	759	Open in IMG/M
3300019719\|Ga0193977_1001044	Not Available	2133	Open in IMG/M
3300019720\|Ga0193991_1034080	Not Available	621	Open in IMG/M
3300019721\|Ga0194011_1000483	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2373	Open in IMG/M
3300019750\|Ga0194000_1006595	Not Available	1254	Open in IMG/M
3300019753\|Ga0194010_1000916	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2599	Open in IMG/M
3300020048\|Ga0207193_1001745	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	38769	Open in IMG/M
3300020159\|Ga0211734_11077170	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	9979	Open in IMG/M
3300020214\|Ga0194132_10111456	Not Available	1720	Open in IMG/M
3300020382\|Ga0211686_10173686	Not Available	889	Open in IMG/M
3300020561\|Ga0207934_1000331	Not Available	7031	Open in IMG/M
3300021270\|Ga0210360_148087	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Amphipleuraceae → Halamphora → Halamphora calidilacuna	2124	Open in IMG/M
3300021335\|Ga0213867_1001429	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	10642	Open in IMG/M
3300021347\|Ga0213862_10324224	Not Available	547	Open in IMG/M
3300021348\|Ga0206695_1488291	Not Available	856	Open in IMG/M
3300021373\|Ga0213865_10001510	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae	15164	Open in IMG/M
3300021894\|Ga0063099_1005532	Not Available	1806	Open in IMG/M
3300021959\|Ga0222716_10638554	Not Available	575	Open in IMG/M
3300022206\|Ga0224499_10019986	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2070	Open in IMG/M
3300022306\|Ga0224509_10125167	Not Available	902	Open in IMG/M
3300022308\|Ga0224504_10067789	Not Available	1428	Open in IMG/M
3300022375\|Ga0210313_1002044	Not Available	2186	Open in IMG/M
(restricted) 3300023276\|Ga0233410_10000392	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	14245	Open in IMG/M
3300024343\|Ga0244777_10000363	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	36172	Open in IMG/M
3300024346\|Ga0244775_10004822	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	13824	Open in IMG/M
3300027193\|Ga0208800_1001648	Not Available	2783	Open in IMG/M
3300027198\|Ga0208163_1035689	Not Available	820	Open in IMG/M
3300027501\|Ga0208948_1028196	Not Available	1241	Open in IMG/M
3300027572\|Ga0208964_1010962	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2606	Open in IMG/M
3300027714\|Ga0209815_1023047	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2550	Open in IMG/M
(restricted) 3300027728\|Ga0247836_1008837	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	9994	Open in IMG/M
3300027751\|Ga0208304_10011526	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	3695	Open in IMG/M
3300027833\|Ga0209092_10037287	Not Available	3088	Open in IMG/M
3300027849\|Ga0209712_10005276	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	10131	Open in IMG/M
3300027883\|Ga0209713_10351722	Not Available	976	Open in IMG/M
3300028600\|Ga0265303_11033759	Not Available	680	Open in IMG/M
3300031519\|Ga0307488_10061630	Not Available	2858	Open in IMG/M
3300031523\|Ga0307492_10005417	All Organisms → cellular organisms → Eukaryota	4871	Open in IMG/M
3300031621\|Ga0302114_10125834	Not Available	1151	Open in IMG/M
3300031857\|Ga0315909_10070788	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	3119	Open in IMG/M
3300032073\|Ga0315315_10025715	Not Available	5457	Open in IMG/M
3300032073\|Ga0315315_10605454	Not Available	1010	Open in IMG/M
3300032136\|Ga0316201_10369941	Not Available	1236	Open in IMG/M
3300032150\|Ga0314779_1003585	Not Available	1302	Open in IMG/M
3300032276\|Ga0316188_10372322	Not Available	747	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.74%
Host-Associated	Host-Associated	1.50%
Engineered	Engineered	0.75%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	96.24%
Terrestrial	Environmental → Terrestrial	1.50%
Human	Host-Associated → Human	1.50%
Wastewater	Engineered → Wastewater	0.75%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	76.69%
Freshwater	Environmental → Aquatic → Freshwater	18.80%
Soil	Environmental → Terrestrial → Soil	1.50%
Digestive System	Host-Associated → Human → Digestive System	1.50%
Sediment	Environmental → Aquatic → Sediment	0.75%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	0.75%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	32.33%
Oceanic	Environmental → Aquatic → Marine → Oceanic	15.79%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	15.79%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.77%
Lentic	Environmental → Aquatic → Freshwater → Lentic	6.02%
Lake	Environmental → Aquatic → Freshwater → Lake	5.26%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.26%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.01%
Sediment	Environmental → Aquatic → Marine → Sediment	2.26%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.50%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	0.75%
Inlet	Environmental → Aquatic → Marine → Inlet	0.75%
Strait	Environmental → Aquatic → Marine → Strait	0.75%
Subtidal Zone	Environmental → Aquatic → Marine → Subtidal Zone	0.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.75%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	30.08%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	15.79%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	12.78%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.77%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.26%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	3.76%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	3.76%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	3.01%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.01%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	2.26%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	2.26%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	1.50%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.50%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.50%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.75%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.75%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.75%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment	0.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.75%
Unclassified	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified	0.75%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	22.56%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	12.78%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	9.77%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	6.02%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	6.02%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	3.01%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	2.26%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	2.26%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	2.26%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	2.26%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	2.26%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	1.50%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.50%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.50%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.50%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.50%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.50%
Polar Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Polar Marine	1.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.75%
Freshwater And Sediment	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment	0.75%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.75%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	0.75%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.75%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.75%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.75%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.75%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	0.75%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.75%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.75%
Marine Surface Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water	0.75%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	0.75%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.75%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	0.75%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.75%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.75%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.75%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.75%
Sediment	Environmental → Aquatic → Marine → Subtidal Zone → Sediment → Sediment	0.75%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.75%
Wastewater Effluent	Engineered → Wastewater → Nutrient Removal → Unclassified → Unclassified → Wastewater Effluent	0.75%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000853	Marine plume microbial communities from the Columbia River - Metatranscriptome 15 PSU	Environmental	Open in IMG/M
3300000860	Marine microbial communities from the coastal margin of the Columbia River, USA - metatranscriptome 33 PSU, 16m	Environmental	Open in IMG/M
3300000864	Marine plume microbial communities from the Columbia River - Metatranscriptome 25 PSU	Environmental	Open in IMG/M
3300001344	Pelagic Microbial community sample from North Sea - COGITO 998_met_02	Environmental	Open in IMG/M
3300002153	Marine eukaryotic phytoplankton communities from the Norwegian Sea - 20m ARK-7M Metagenome	Environmental	Open in IMG/M
3300002447	Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome	Environmental	Open in IMG/M
3300002835	Freshwater microbial communities from Lake Mendota, WI - (Lake Mendota Combined Ray assembly, ASSEMBLY_DATE=20140605)	Environmental	Open in IMG/M
3300003549	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_08_M0_20 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003553	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_18_M0_10 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003554	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_04_M0_20 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003555	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_17_M020 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003566	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_07_M0_10 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003682	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_03_M0_10 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003683	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_54_BLW_10 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003712	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_85LU_5_RNA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003713	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_74LU_5_RNA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300003910	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW	Environmental	Open in IMG/M
3300004595	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_RNA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004763	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DD (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004767	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004836	Metatranscriptome of freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.DN (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005528	Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaG	Environmental	Open in IMG/M
3300005827	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA	Environmental	Open in IMG/M
3300005837	Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18	Environmental	Open in IMG/M
3300005989	Wastewater effluent complex algal communities from Wisconsin, to seasonally profile nutrient transformation and Carbon sequestration - JI 7/17/14 B DNA	Engineered	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006355	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006356	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006357	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006372	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_>0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006373	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006378	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006379	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006383	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006394	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006396	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006397	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006399	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006400	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006850	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_RNA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006917	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA	Environmental	Open in IMG/M
3300007333	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - KN S12 Surf_B metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007550	Estuarine microbial communities from the Columbia River estuary - metaG 1549A-3	Environmental	Open in IMG/M
3300007553	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.689	Environmental	Open in IMG/M
3300007600	Estuarine microbial communities from the Columbia River estuary - metaG 1568A-3	Environmental	Open in IMG/M
3300007667	Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3	Environmental	Open in IMG/M
3300007706	Estuarine microbial communities from the Columbia River estuary - metaG 1555B-3	Environmental	Open in IMG/M
3300007861	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1372B_3um	Environmental	Open in IMG/M
3300007953	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1373A_3um	Environmental	Open in IMG/M
3300007981	Estuarine microbial communities from the Columbia River estuary - metaG 1556A-3	Environmental	Open in IMG/M
3300008259	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0132-C-NA	Environmental	Open in IMG/M
3300009033	Salt pond soil microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_D2_MG	Environmental	Open in IMG/M
3300009057	Estuarine microbial communities from the Columbia River estuary - metaG 1553A-3	Environmental	Open in IMG/M
3300009080	Estuarine microbial communities from the Columbia River estuary - Ebb tide ETM metaG S.759	Environmental	Open in IMG/M
3300009086	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713	Environmental	Open in IMG/M
3300009170	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009436	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome	Environmental	Open in IMG/M
3300009526	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_90	Environmental	Open in IMG/M
3300010307	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_0.1_0.8_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010316	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNA	Environmental	Open in IMG/M
3300012414	Metatranscriptomics of polar marine prokaryotic and eukaryotic communities from Arthur Harbor ice station, Antarctica - RNA16.ICE_1m.20151115 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012753	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES038 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300013108	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 103m, 250-2.7um, replicate b	Environmental	Open in IMG/M
3300016759	Metatranscriptome of marine eukaryotic communities from Pacific Ocean in ASW medium, resuspended in ASW w/o nitrate, 20 C, 29 psu salinity and 688 ?mol photons light - Chaetoceros curvisetus (MMETSP0718)	Environmental	Open in IMG/M
3300017105	Metatranscriptome of marine eukaryotic communities from Atlantic Ocean in L1 medium with seawater, 2 C, 33 psu salinity and 581 ?mol photons light - Chaetoceros dichaeta CCMP 1751 (MMETSP1447)	Host-Associated	Open in IMG/M
3300017245	Metatranscriptome of marine eukaryotic communities from Gulf of California (Sea of Cort?s) in ASW medium, resuspended in ASW w/o nitrate, 20 C and 643 ?mol photons light - Extubocellulus spinifer CCMP 396 (MMETSP0698)	Host-Associated	Open in IMG/M
3300017773	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24	Environmental	Open in IMG/M
3300019707	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLC_0-1_MG	Environmental	Open in IMG/M
3300019711	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLC_4-5_MG	Environmental	Open in IMG/M
3300019716	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRC_0-1_MG	Environmental	Open in IMG/M
3300019719	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FRT_4-5_MG	Environmental	Open in IMG/M
3300019720	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? BLC_2-3_MG	Environmental	Open in IMG/M
3300019721	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_7-8_MG	Environmental	Open in IMG/M
3300019750	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States - FLT_6-7_MG	Environmental	Open in IMG/M
3300019753	Sediment microbial communities from the Broadkill River, Lewes, Delaware, United States ? FLC_6-7_MG	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental	Open in IMG/M
3300020214	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015054 Kigoma Offshore 80m	Environmental	Open in IMG/M
3300020382	Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)	Environmental	Open in IMG/M
3300020561	Freshwater microbial communities from Lake Mendota, WI - 22APR2009 deep hole epilimnion (SPAdes)	Environmental	Open in IMG/M
3300021270	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.593 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021335	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540	Environmental	Open in IMG/M
3300021347	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266	Environmental	Open in IMG/M
3300021348	Metatranscriptome of ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021373	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282	Environmental	Open in IMG/M
3300021894	Metatranscriptome of marine eukaryotic phytoplankton communities from the Arctic Ocean - ARK-63M (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300022206	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_24	Environmental	Open in IMG/M
3300022306	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_24	Environmental	Open in IMG/M
3300022308	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_24	Environmental	Open in IMG/M
3300022375	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1183 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023276 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_1_MG	Environmental	Open in IMG/M
3300024343	Combined assembly of estuarine microbial communities from Columbia River, Washington, USA >3um size fraction	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300027193	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541 (SPAdes)	Environmental	Open in IMG/M
3300027198	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.753 (SPAdes)	Environmental	Open in IMG/M
3300027243	Estuarine microbial communities from the Columbia River estuary - metaG 1556A-3 (SPAdes)	Environmental	Open in IMG/M
3300027501	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_17_M020 (SPAdes)	Environmental	Open in IMG/M
3300027572	Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20 (SPAdes)	Environmental	Open in IMG/M
3300027714	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA (SPAdes)	Environmental	Open in IMG/M
3300027728 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m	Environmental	Open in IMG/M
3300027751	Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713 (SPAdes)	Environmental	Open in IMG/M
3300027833	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027849	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean - Greenland ARC118M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300027883	Marine eukaryotic phytoplankton communities from Arctic Ocean - Arctic Ocean- Svalbard ARC20M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300028600	Marine sediment microbial communities from subtidal zone of North Sea - Hel_20160317 (Illumina Assembly)	Environmental	Open in IMG/M
3300030851	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031523	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SI3L	Environmental	Open in IMG/M
3300031621	Marine microbial communities from Western Arctic Ocean, Canada - AG5_Surface	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300032073	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416	Environmental	Open in IMG/M
3300032136	Coastal sediment microbial communities from Delaware Bay, Delaware, United States - CS-6 worm burrow	Environmental	Open in IMG/M
3300032150	Metatranscriptome of sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SB 2018 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032272	Coastal sediment microbial communities from Maine, United States - Lowes Cove worm burrow	Environmental	Open in IMG/M
3300032276	Coastal sediment microbial communities from Maine, United States - Phippsburg worm burrow 1	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
Powered by PDBe Molstar

Protein ID	Sample Taxon ID	Habitat	Sequence
NpTDRAFT_1009632	3300000853	Freshwater And Marine	MIMPLFNELVPANLVPAAAVIREGRALFGMTGRKGFVDGIAS*
BpTDRAFT_1010032	3300000860	Freshwater And Marine	MTLFKEVLVPANLVPAAAVIREGQALSNITGRKESVDCNISYMLKPKASL*
OpTDRAFT_10003212	3300000864	Freshwater And Marine	MIMTLFKEVLVPANLXXXXXXXREGQALFEITGRTKFVGCNLSCMLKFKA*
JGI20152J14361_100012872	3300001344	Pelagic Marine	MIMTLTKKVFSPANLVPAAAVIREGQALSEITGRKVSVDCIVSYLLNIKA*
JGI24540J26637_100617442	3300002153	Marine	MTLFKEVLVPANLVPAAAVIREGQALSEMTGRKESVDCTVSYLLNPKA*
JGI24768J34885_103173902	3300002447	Freshwater And Sediment	MIMTLIKEVLVPANLVPAAAVIREGQALSVITGRIASVDCNISYMLKFK
B570J40625_10000130424	3300002835	Freshwater	MIMTLIKKVLVPANLVPAAAVIREGQALSVITGRIVSVDCNISYILKFKA*
Ga0008452J51689_1003862	3300003549	Seawater	MTLFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKA*
Ga0008454J51686_1010422	3300003553	Seawater	MTIFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKA*
Ga0008451J51688_1005402	3300003554	Seawater	MIMTIFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKA*
Ga0008453J51685_1030601	3300003555	Seawater	MIVTLFKEVLVPANLVPAAAVIREGQALPVITGRTESVDCTISYMLKFKAQL*
Ga0008455J51687_10005442	3300003566	Seawater	MTLFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKAQL*
Ga0008456_10025702	3300003682	Seawater	MTLFKEVLVPANLVPAAAVIREGQALSIITGRTASVDCITSYILKFKAQL*
Ga0008459J53047_10064081	3300003683	Seawater	MTLFKEVLVPANLVPAAAVIREGQALPVITGRIESVDGNISYMLKFKAQL*
Ga0008276_1017841	3300003712	Marine	MIMTLFKEVLVPANLVPAAAVIREGQALFIITGRTASVDCITSYMLKFKA*
Ga0008274_1018421	3300003713	Marine	MIMTLFKEVLVPANLVPAAAVIREGQALFVITGRTASVDCIISYMSKFKV*
JGI26437J51864_100000678	3300003910	Freshwater Lake Sediment	MTLIKKVLVPANLVPAAAVIREGQALSVITGRIVSVDCNISYILKFKA*
Ga0008278_10168451	3300004595	Marine	MTLFKEVLVPANLVPAAAVTREGQALFVFTGRTESVDCNISFILKFRV*
Ga0008278_10178152	3300004595	Marine	MKKINFGCKVLSLKVIMTLFKEVVPANTRAAAAVKRGGQALFVMTGRKRFVDGKISFW*
Ga0007746_10008252	3300004763	Freshwater Lake	MIMTLIKEVLVPANLVPAAAVIREGQALSVITGRIASVDCNISYMLKFKA*
Ga0007750_15300631	3300004767	Freshwater Lake	MIMTLIKEVLVPANLVPAAAVIREGQALSVITGRIESVDRNISYMLKFRA*
Ga0007759_114364151	3300004836	Freshwater Lake	MIMTLIKEVLVPANLVPAAAVIREGQALPKITGRKVSVDCNISFMLKFRA*
Ga0068872_103350421	3300005528	Freshwater Lake	VPANLVPAAAVIREGQALSVITGRIESVDCNISYMLKFKA*
Ga0074478_11269412	3300005827	Sediment (Intertidal)	MTLFKEVLVPANLVPAAAVIREGQALSEITGRKASVDCNISYMLKFKA*
Ga0078893_101411677	3300005837	Marine Surface Water	MIVTLFKEVLVPANLVPAAAVIREGQALSEMTGRKESVDCTVSYLLNPKA*
Ga0075154_101039681	3300005989	Wastewater Effluent	MTLFKEVLVPANLVPAAAVIREGQALSKITGRKVSVDCNISFILKFKAQL*
Ga0075441_100618151	3300006164	Marine	MTLFKEVLVPANLVPAAAVIREGQALFVITGRTESVDCNISYMLKFKV*
Ga0075501_10312641	3300006355	Aqueous	MIMTLFKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNLSYMLKFKA*
Ga0075501_10592451	3300006355	Aqueous	MIMTLFKKVLVPANLVPAAAVIREGQALSVITGRIESVDCNLSYIYLKFKA*
Ga0075487_10062892	3300006356	Aqueous	MTLFKEVLVPANLVPAAAVIREGQALSGMTGRKESVDSIVSYLLNPKA*
Ga0075487_10531761	3300006356	Aqueous	MIVTLFKEVLVPANLVPAAAVIREGQALPVVTGRIASVDGTISYMLKFKA*
Ga0075487_10703101	3300006356	Aqueous	MTLFKEVLVPANLVPAAAVIREGQALFVITGRTASVDCNISYMLKFKAQF*
Ga0075487_10878421	3300006356	Aqueous	MIMTLFKEVLVPANLVPAAAVIREGRALFVITGRTASVDCNISYMLKFKVQF*
Ga0075487_10879601	3300006356	Aqueous	MIMTLFKKVLVPANLVPAAAVIREGQALSKITGRKVSVDGNISFMLKFKA*
Ga0075502_11466151	3300006357	Aqueous	MTLFKEVLVPANLVPAAAVIREGRALFVITGRTASVDCNISYMLKFKVQF*
Ga0075502_11656911	3300006357	Aqueous	MTLFKEVLVPANLVPAAAVIREGQALFVITGRTASVDCNISSMLKFKV*
Ga0075502_11791402	3300006357	Aqueous	MIMTLFKEVLVPANLVPAAAVIREGQALSTITGRIESVDCNISYMLKFKA*
Ga0075502_16951922	3300006357	Aqueous	MIMTFSKKIVPANLVPAAAVIREGRALFEIIGRKEFVDGIVS*
Ga0075489_10160052	3300006372	Aqueous	MTLFKEVLVPANLVPAAAVIREGQALSEITGRKESVDCNISYMLKFKA*
Ga0075483_10094781	3300006373	Aqueous	MIVTLFKEVLVPANLVPAAAVTREGQALFVITGRIESVDCNLSYILKI*
Ga0075483_10304571	3300006373	Aqueous	VNSGCKILSLKMIMTLFKEVLVPANLVPAAAVIREGQALSEMTGCKGSVDSIVSYLLKPKA*
Ga0075498_10439022	3300006378	Aqueous	VLVPANLVPAAAVIREGQALSVITGRIESVDCNLSYMLKFKA*
Ga0075513_10569991	3300006379	Aqueous	MIVTLFKEVLVPANLVPAAAVIREGQALSIITGRTESVDCIISYILKFKAQL*
Ga0075513_10764251	3300006379	Aqueous	MTLFKKVLVPANLVPAAAVIREGQALSKITGRKVSVD
Ga0075513_14047142	3300006379	Aqueous	MTLFKEVLVPANLVPAAAVIREGQALFVITGRIGSVDCNLNYILKFKVQF*
Ga0075504_10687192	3300006383	Aqueous	MIDGFFGCKVLSLKMIMTLFKEVLVPANLVPAAAVIREGQALSTITGRIESVDCNISYMLKFKA*
Ga0075492_10277002	3300006394	Aqueous	MIDGFSGCKVLSLKMIMTLFKEVLVPANLVPAAAVIREGQALSIFTGRIESVDCNISYMLKF*
Ga0075493_10652442	3300006396	Aqueous	MIMTLFKEVLVPANLVPAAAVIREGQALFVITGRTASVDCNISSMLKFKV*
Ga0075488_10114941	3300006397	Aqueous	MTLFKEVLVPANLVPAAAVIREGQALSGITGRKESVDCIVSYLLNPKA*
Ga0075488_10330901	3300006397	Aqueous	MIMTLFKEVLVPANLVPAAAVKREGQALSVITGRRESVDCNISYMLKFKA*
Ga0075495_10745152	3300006399	Aqueous	MIMTLFKEVLVPANLVPAAAVIREGQALSVITGRRESVDGNISYMLKFKA*
Ga0075503_11702442	3300006400	Aqueous	IFDCKVLSLKMIVTLFKEVLVPANLVPAAAVIREGQALPVITGRTESVDCTISYMLKFKAQL*
Ga0075467_104967411	3300006803	Aqueous	LFKEVLVPANLVPAAAVIREGQALSVITGRRESVDGNISYMLKFKA*
Ga0075491_10707201	3300006850	Aqueous	MIMTLFKEVLVPANLVPAAAVIREGQALSIITGRTASVDCITSYMLKLKAQL*
Ga0075491_15494932	3300006850	Aqueous	MTLFKKVLVPANLVPAAAVIREGQALPEITGRKVSVDGNISFILKIKA*
Ga0075472_100043078	3300006917	Aqueous	MTLFKKVLVPANLVPAAAVIREGQALSVITGRIESVDCNLSYIYLKFKA*
Ga0079270_13655191	3300007333	Marine	MTLLEKEVPTNLVPAVAVIREGQALFKIIGRKGFVDSIVSHLLKVRAQL*
Ga0102880_10894621	3300007550	Estuarine	MIDGFSGCKVLSLKMIMTLFKEVLVPANLVPAAAVIREGQALFVITGRTASVDCNISSMLKFKV*
Ga0102819_10874541	3300007553	Estuarine	MTLFKEEVPANLVPAAAVIREGQALSNITGRKESVDCNISYMLKPKAS
Ga0102920_10140382	3300007600	Estuarine	MTLIKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNISYMLKFKA*
Ga0102910_10220911	3300007667	Estuarine	MTLFKEVLVPANLVPAAAVIREGQALSIFTGRIESVDCNISYMLKF*
Ga0102899_10051491	3300007706	Estuarine	MTLFKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNISYMLKFKA*
Ga0105736_10219131	3300007861	Estuary Water	KEVLVPANLVPAAAVIREGQALSVITGRIASVDCNISYMLKFKA*
Ga0105738_10232831	3300007953	Estuary Water	MTLIKEVLVPANLVPAAAVIREGQALSVITGRIASVDCNISYMLKFKA*
Ga0102904_10361152	3300007981	Estuarine	CKVLSLKMIMTLFKEVLVPANLVPAAAVIREGQALFIITGRTASVDCITSYMLKFKA*
Ga0114841_10095561	3300008259	Freshwater, Plankton	MIMTLIKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNISYMLKFKA*
Ga0102956_10066471	3300009033	Soil	MTLFKEVLVPANLVPAAAVIREGQALPIVTGRIESVDCIISYMLKFKA*
Ga0102892_10284031	3300009057	Estuarine	MIDGFSGCKVLSLKMIMTLFKKVLVPANLVPAAAVIREGQALSIFTGRIESVDCNISYMLKF*
Ga0102815_100008424	3300009080	Estuarine	MTLFKKVLVPANLVPAAAVIREGQALSVITGRIESVDCNLSYMFKI*
Ga0102812_100207317	3300009086	Estuarine	KKVLVPANLVPAAAVIREGQALSVITGRIESVDCNLSYMFKI*
Ga0102812_105062802	3300009086	Estuarine	MTLFKEALVPANLVPAAAVIREGQALSKITGRKESVDCNISYMLKFKA*
Ga0105096_100055518	3300009170	Freshwater Sediment	MTLIKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNISYILKFKA*
Ga0115008_101438651	3300009436	Marine	MTLFKEVLVPANLVPAAAVIREGQALFVITGRTESVDCNLSYMLKFKVQF*
Ga0115004_105591971	3300009526	Marine	LKEVLVPANLVPAAAVIREGQALSGVTGRKGSVDCIVSYLLKPRA*
Ga0129319_11261631	3300010307	Aqueous	LVPANLVPAAAVKREGQALFEILGRKEFVGCDKSCLLKFKI*
Ga0136655_10028411	3300010316	Freshwater To Marine Saline Gradient	MTLFKEVLVPANLVPAAAVIREGQALSGITGRKGFVDCITSYLLNFKALL*
Ga0138264_15687142	3300012414	Polar Marine	MTLFKEVLVPANLVPAASVIREGQALSVITGRTESVDCNTSYMLKFKAQL*
Ga0138264_18333682	3300012414	Polar Marine	MIVTLFKEVLVPANLVPASAVIREGQALPVITGRTESVDCTISYMLKFKAQL*
Ga0157548_11402241	3300012753	Freshwater	MTLFKEVLVPANLVPAAGVKREGQALLEIIGRKEFVGCDESYLLNFKA*
Ga0171648_10102029	3300013108	Marine	MTLFKEVLVPANLVPAAAVIREGQALFVFTGRTASVDCIISYILKFKA*
Ga0186328_1012371	3300016759		MTAFSCKVLSFKMIMTLLKEVLVPANLVPAAAVIREGQALSEITGRKAFVDGIVS
Ga0186515_1049971	3300017105	Host-Associated	MTLFTEVLVPANLVPAAAVIREGQALSEITGRKGSVDCIVSYLLNSKAQL
Ga0186442_1143971	3300017245	Host-Associated	MTLFKEVLVPANLVPAAAVIREGQALSKMTGRKESVDSTVSYLLNPKAQL
Ga0181386_11722591	3300017773	Seawater	VPANLVPAAAVIREGQALSEITGRKGSVDCIVSYLLNPKA
Ga0193989_10241261	3300019707	Sediment	MTLFKEVLVPANLVPAAAVIREGQALPGITGRKESVDSTISYLLN
Ga0193993_10008311	3300019711	Sediment	MTLFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNLSYMLKFKA
Ga0193984_10211991	3300019716	Sediment	MTLFKEVLVPANLVPAAAVIREGLALSEITGRKGFVDCIVNYLIN
Ga0193977_10010442	3300019719	Sediment	MTLFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKA
Ga0193991_10340801	3300019720	Sediment	MTLFKEVLVPANLVPAAAVIREGQALSEITGRKESVDCNISYMLKFKA
Ga0194011_10004834	3300019721	Sediment	FGCKVLSLKMIMTLFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKA
Ga0194000_10065951	3300019750	Sediment	MTLFKEVXVPANLVPAAAVIREGQALSVITGRTESVDCNISY
Ga0194010_10009164	3300019753	Sediment	MIMTLFKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNLSYMLKFKA
Ga0207193_100174516	3300020048	Freshwater Lake Sediment	MTLIKEVLVPANLVPAAAVIREGQALSVITGRIASVDCNISYMLKFKA
Ga0211734_110771706	3300020159	Freshwater	MIMTLIKEVLVPANLVPAAAVIREGQALSVITGRIESVDRNISYMLKFRA
Ga0194132_101114561	3300020214	Freshwater Lake	MTLIKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNISYILKFKA
Ga0211686_101736861	3300020382	Marine	MIMTLFKEVLVPANLVPAAAVIREGQALSEITGRKGSVDCIVSYLLNSKAQL
Ga0207934_10003312	3300020561	Freshwater	MIMTLIKEVLVPANLVPAAAVIREGQALSVITGRIASVDCNISYMLKFKA
Ga0210360_1480872	3300021270	Estuarine	MTLFKEVLVPANTRASSRVIREGQALSGMTGRKESVDRNVS
Ga0213867_100142922	3300021335	Seawater	MTLFKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNLSYMLKFKA
Ga0213862_103242241	3300021347	Seawater	MTLFKEVLVPANLVPAAAVIREGQALPIITGRIESVDGIISYMLKF
Ga0206695_14882911	3300021348	Seawater	MIMTLFKEVLVPANLGTGVAVLLEGQALPVITGRIESVDGNISYMLKFKAQL
Ga0213865_100015107	3300021373	Seawater	MIVTLFKEVLVPANLVPAAAVIREGQALPVITGRTESVDCTISYTLKFKA
Ga0063099_10055321	3300021894	Marine	MTLFKEVLVPANLVPAAAVIREGQALFVITGRTASVDCNISSMLKFKV
Ga0222716_106385541	3300021959	Estuarine Water	VLVPANLVPAAAVIREGQALSEITGRKESVDCNISYMLKFKA
Ga0224499_100199863	3300022206	Sediment	MIMTLFKEVLVPANLVPAAAVIREGQALPIVTGRIESVDCIISYMLKFKA
Ga0224509_101251671	3300022306	Sediment	IMTLFKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNLSYMLKFKA
Ga0224504_100677891	3300022308	Sediment	MTLFKEVLVPANLVPAAAVIREGQALPIVTGRIESVDCIISYMLKFKA
Ga0210313_10020442	3300022375	Estuarine	MTLIKEVLVPANLVLADAVIREGQALSVITGRIESVDCNISYILKFKA
(restricted) Ga0233410_1000039221	3300023276	Seawater	MTLFKEVLVPANLVPAAAVIREGQALSIITGRTASVDCITSYMLKLKAQL
Ga0244777_100003631	3300024343	Estuarine	MTLFKEVLVPANLVPAAAVIREGQALFIITGRTASVDCITSYMLKFKA
Ga0244775_100048225	3300024346	Estuarine	MTLFKKVLVPANLVPAAAVIREGQALSVITGRIESVDCNLSYMFKI
Ga0208800_10016481	3300027193	Estuarine	MTLIKEVLVPANLVPAAAVIREGQALSAITGRIESVDCNISYILKFKA
Ga0208163_10356891	3300027198	Estuarine	MTLFKEVLVPANLVPAAAVIREGQALSEITGRKASVDCNISYMLKFKA
Ga0208174_10091041	3300027243	Estuarine	MIDGFSGCKVLSLKMIMTLFKKVLVPANLVPAAAVIREGQALSIFTGRIESVDCNISYMLKF
Ga0208948_10281961	3300027501	Marine	MIMTIFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKA
Ga0208964_10109621	3300027572	Marine	MTIFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKA
Ga0209815_10230474	3300027714	Marine	MIMTLFKEVLVPANLVPAAAVIREGQALFVITGRTESVDCNISYMLKFKV
(restricted) Ga0247836_10088376	3300027728	Freshwater	MTLIKEVLVPANLVPAAAVIREGQALSVITGRIESVDRNISYMLKFRA
Ga0208304_100115264	3300027751	Estuarine	MIMTLIKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNLSYMFKI
Ga0209092_100372872	3300027833	Marine	MTLFKEVLVPANLVPAAAVIREGQALFVITGRTESVDCNLSYMLKFKVQF
Ga0209712_1000527611	3300027849	Marine	MTLFKEVLVPANLVPAAAVIREGQALFVITGRTESVDCNISYMLKFKVQF
Ga0209713_103517221	3300027883	Marine	MTLFKEVLVPANLVPAAAVIREGQALPVITGRIESVDGNISYMLKFKAQL
Ga0265303_110337591	3300028600	Sediment	MIMTLFKEVSVPANLVPAAAVIREGQALSKMTGRKESVDSTVSYLLNPKAQL
Ga0075380_100243022	3300030851	Soil	KALANLVPAAAVIREVQALFGIIGRKGCVDGMVSLLLNILA
Ga0307488_100616304	3300031519	Sackhole Brine	MTLFGEAVPANLVPAAAVIREGQAVSGIIGRKGFVDCVAS
Ga0307492_100054173	3300031523	Sea-Ice Brine	MIMTLFKEVLVPANLVPAAAVKREGQALSEITGRKESVDCNISYMLKFKNLF
Ga0302114_101258341	3300031621	Marine	MIMTLFKKVLVPANLVPAAAVIREGQALPEITGRKGSVDCIVSYLLKPRA
Ga0315909_100707882	3300031857	Freshwater	MTLIKEVLVPANLVPAAAVIREGQALSVITGRIESVDCNISYMLKFKA
Ga0315315_100257152	3300032073	Seawater	MIMTIFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYML
Ga0315315_106054541	3300032073	Seawater	FKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKA
Ga0316201_103699411	3300032136	Worm Burrow	MIMTLFKEVLVPANLVPAAAVIREGQALSKMTGRKESVDSTVSYLLNPKA
Ga0314779_10035851	3300032150	Sediment	MTLFKEVLVPANLVPAAPVIREGQALFVITGRTESVDCNISYMLKFKVQF
Ga0316189_102758901	3300032272	Worm Burrow	MIDGFSGCKVLSLKMIMTLFKEVLVPANLVPAAAVIREGQALFEITGRIEFVDCILSYIIKF
Ga0316188_103723221	3300032276	Worm Burrow	MTIFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYML

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F059360

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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