NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300003553

3300003553: Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_18_M0_10 (Metagenome Metatranscriptome)



Overview

Basic Information
IMG/M Taxon OID3300003553 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0099541 | Gp0089011 | Ga0008454
Sample NameAmmonia-oxidizing marine microbial communities from Monterey Bay, California, USA - Metatranscriptome CAN11_18_M0_10 (Metagenome Metatranscriptome)
Sequencing StatusPermanent Draft
Sequencing CenterDOE Joint Genome Institute (JGI)
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size20154891
Sequencing Scaffolds11
Novel Protein Genes14
Associated Families12

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available6
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Patiriisocius → Patiriisocius marinus1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei1

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameMarine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Alternative Ecosystem Assignments
Environment Ontology (ENVO)marine biome → intertidal zone → sea water
Earth Microbiome Project Ontology (EMPO)Free-living → Saline → Water (saline)

Location Information
LocationMonterey Bay, California, USA
CoordinatesLat. (o)36.25Long. (o)-122.2099Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000075Metagenome / Metatranscriptome2622Y
F000155Metagenome / Metatranscriptome1877Y
F001293Metagenome / Metatranscriptome729Y
F006548Metatranscriptome370Y
F009426Metagenome / Metatranscriptome318Y
F012678Metagenome / Metatranscriptome278Y
F059360Metagenome / Metatranscriptome134Y
F060579Metatranscriptome132N
F078750Metagenome / Metatranscriptome116N
F085780Metagenome / Metatranscriptome111Y
F097458Metagenome / Metatranscriptome104Y
F101265Metagenome / Metatranscriptome102N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0008454J51686_100758Not Available1153Open in IMG/M
Ga0008454J51686_101042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes1110Open in IMG/M
Ga0008454J51686_101344Not Available545Open in IMG/M
Ga0008454J51686_102318All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae770Open in IMG/M
Ga0008454J51686_103232Not Available533Open in IMG/M
Ga0008454J51686_105422All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Patiriisocius → Patiriisocius marinus1033Open in IMG/M
Ga0008454J51686_109747Not Available1031Open in IMG/M
Ga0008454J51686_111656Not Available1263Open in IMG/M
Ga0008454J51686_115344Not Available523Open in IMG/M
Ga0008454J51686_124297All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria590Open in IMG/M
Ga0008454J51686_130863All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Lactobacillaceae → Lacticaseibacillus → Lacticaseibacillus paracasei602Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0008454J51686_100758Ga0008454J51686_1007582F097458HRSYKLPPIFLSLTFAALLPRRDIYALAFTLKLNLKHIISIDSWYKLLGSPILFDTYTLVVQRQNY*
Ga0008454J51686_100779Ga0008454J51686_1007791F000075FTMKFALALVATVAANRYENMNEDELLVNLSSTLSSALDSEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0008454J51686_101042Ga0008454J51686_1010422F059360MTIFKEVLVPANLVPAAAVIREGQALSVITGRTESVDCNISYMLKFKA*
Ga0008454J51686_101344Ga0008454J51686_1013441F101265GNKISGLKLATDLRLKRTYHCRITDVGEDYDLRIIISKSIGVYIVKTTSSEIVEAN*
Ga0008454J51686_102318Ga0008454J51686_1023182F001293MIRNSLICKLINVQPSMKENNEKKIKNEDEISKLTKAPPKDTAALDKRSVLAKVNSQGSGT*
Ga0008454J51686_103232Ga0008454J51686_1032321F009426IKSQAKMEIKLAATKVNKNLKLLPNMTISEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIECE*
Ga0008454J51686_103579Ga0008454J51686_1035791F000155EMKFTLALIAAVAATKYDHMTEDELLVSLSNTLSSALESEARGDGDAAVAKTAAIKNIQKSLTARILKRLDDGQPLVEVARKMKAIEGMQP*
Ga0008454J51686_104792Ga0008454J51686_1047921F060579LEPNRNLTFAMLGLLAAVASFNAPTTMVGQSAVSSVARTDVSMSTKYTVAAGIAKKKNPKTGDSSNLKGYTVGSRAPDMAKNSGTTKAEQSIFDKMFGKAPTTDVKGAQRKTKRI*
Ga0008454J51686_105422Ga0008454J51686_1054221F078750LFIMKNLLLLLIFISLFSCSPEETTQANNTEQNYTTTLSSFVLNDYLATPAIDVPLGTLFYQNVPYGPDQRQVIDIFLPPSASGFSVTQQDVVDYRDMILNIHDGDFKSGDKSAAYYADNEISAYLSNNIAFVSMNYRFLNTSEQNNKGVTTSFKDAENVFNFIRTHTNKLKINSNKIFIIGNGFAGSSITQYLLSQPFYGFKVKGISMNDPLSSLDFLDFNDTFSDFDFDLYSFVSEQDEQMIMELYGGIQFNQLESEDIIIKNRETASFTSAYDNFTGRVRISAIDYNVPYQTLENIKHLIRHQLHSIEIYNKATLQGLHVDAQILHLHMQNDQSELDFIL
Ga0008454J51686_109747Ga0008454J51686_1097472F097458LRRSYKLPPISLSFAFAALLPRRGIYALAGTPKIDFQHAMPIDSRYELLGSPILVDTRTLVVRSQGSR*
Ga0008454J51686_111656Ga0008454J51686_1116562F085780MRSKLKSLKIVQVLPNGCVHFDHLVYLKTYTRYNFSKKSLFFSLLDKKKLFFENSNFFYKKYRNQ
Ga0008454J51686_115344Ga0008454J51686_1153441F009426KLKNANFSTATKVNKNVKLLLNMTFSEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIVCE*
Ga0008454J51686_124297Ga0008454J51686_1242973F012678MLNQHSLEEIGDIYNLLEDIQKEYEEGIKPILIKNSPSRFKNPHTVPKLKKIQINRGLGLAA
Ga0008454J51686_130863Ga0008454J51686_1308631F006548FRPTIAVACLSLGASINLEARSNNFLAASSETDQRDGFDLNLEVSAEVRETLQGLAMELLSANPVEGMASVRDGMKVVSGKMDLKSAVKAIDHKNLPADVQALVKTASSTTKADFDETSMAKARIALNDLVEKAWVELDDKIIECKEYQEMNRATFDQVVTDISRLVEQITDLERVETESLEGIAKMEMEIKSVEAELSK
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