Protein Family IF12856
Metagenome
Isolate
375
Members
56
Samples
5
Scaffolds
272.06
Avg Length
Representative Sequence
- ID
- iso_pr_bacteria|2876019154|2876019248|
- Length
- 295 aa
- Sequence
- MPSQYRPQILGWIGDLGKGTNYFSGPDDRLLYANDNYCAFLRKTSSDQIFYLCVSTIVIICSFLGIYISFLLLFEFNPETESFLFITFLILFITCILALYIFIPELYQNLFTRKGSPIILNRKTKKVYINESYFFNFTTFKNPIYFLHPNKKRIKEYDWDDLHGVVVYNFSTKKRIKECDWADLHGVVVHNFSTYPLCTTILMVCEPGTYKTIDHVLLDPLRYSVGRYQVWGWVNNFMCFNDLISLNDGKYTWEQETPFKKDIIQGQGWPEWMVEAFNALSPEHLTEIKQKYHVQ
Sample Types
Isolate
98.7%
Metagenome
1.3%
MAG
0.0%
Metatranscriptome
0.0%
Single Cell
0.0%
Taxa Family Distribution
Apidae
94.6%
Unclassified
5.4%
Taxonomy
Archaea
0
Bacteria
374
Eukaryota
0
Viruses
0
Unclassified
1
Samples
| # | Sample ID | Description | Type | Taxa Family |
|---|---|---|---|---|
| 1 | 3300000333 | Honey bee gut microbial communities from New Haven, Connecticut, USA - Honey Bee colony | Metagenome | Apidae |
| 2 | 2756170265 | Gilliamella apicola DSM 104097 | Isolate | Unclassified |
| 3 | 2843337836 | Gilliamella apicola N-12-12 | Isolate | Apidae |
| 4 | 2849449383 | Gilliamella apicola WF3-4 | Isolate | Apidae |
| 5 | 2849458003 | Gilliamella apicola HK7 | Isolate | Apidae |
| 6 | 2849463436 | Gilliamella apicola A-8-12 | Isolate | Apidae |
| 7 | 2873656248 | Gilliamella apicola A-1-24 | Isolate | Apidae |
| 8 | 2876016455 | Gilliamella apicola N6 | Isolate | Apidae |
| 9 | 2515154047 | Candidatus Gilliamella apicola wkB1 | Isolate | Apidae |
| 10 | 2684622925 | Gilliamella apicola Ga_178 | Isolate | Unclassified |
| 11 | 2684622926 | Gilliamella apicola Ga_182 | Isolate | Unclassified |
| 12 | 2840795165 | Gilliamella apicola N-22 | Isolate | Apidae |
| 13 | 2854144746 | Gilliamella apicola NO6 | Isolate | Apidae |
| 14 | 2857870431 | Gilliamella apicola A-7-24 | Isolate | Apidae |
| 15 | 2876019154 | Gilliamella apicola ESL0182 | Isolate | Apidae |
| 16 | 2876030618 | Gilliamella apicola HK2 | Isolate | Apidae |
| 17 | 2837618715 | Gilliamella apicola Aw-17 | Isolate | Apidae |
| 18 | 2841195917 | Gilliamella apicola wkB7 | Isolate | Apidae |
| 19 | 2846495668 | Gilliamella apicola ESL0178 | Isolate | Apidae |
| 20 | 2849452216 | Gilliamella apicola AW11 | Isolate | Apidae |
| 21 | 2849455045 | Gilliamella apicola NO8 | Isolate | Apidae |
| 22 | 2873636219 | Gilliamella apicola App2-1 | Isolate | Apidae |
| 23 | 2876033458 | Gilliamella apicola AM6 | Isolate | Apidae |
| 24 | 2876036378 | Gilliamella apicola Choc3-5 | Isolate | Apidae |
| 25 | 2189573031 | Gamma-1 phylotype from Apis mellifera gut collected at the Carl Hayden Bee Research Center, Tucson, AZ. | Metagenome | Apidae |
| 26 | 2840797934 | Gilliamella apicola Choc5-1 | Isolate | Apidae |
| 27 | 2846475167 | Gilliamella apicola N-G5 | Isolate | Apidae |
| 28 | 2857888719 | Gilliamella apicola N-15-12 | Isolate | Apidae |
| 29 | 2873648542 | Gilliamella apicola NO10 | Isolate | Apidae |
| 30 | 2873653628 | Gilliamella apicola App6-5 | Isolate | Apidae |
| 31 | 2876014139 | Gilliamella apicola wkB18 | Isolate | Apidae |
| 32 | 2785510744 | Gilliamella sp. ESL0405 | Isolate | Apidae |
| 33 | 2785510745 | Gilliamella sp. ESL0407 | Isolate | Apidae |
| 34 | 2843334863 | Gilliamella apicola A-2-24 | Isolate | Apidae |
| 35 | 2849468476 | Gilliamella apicola N-28 | Isolate | Apidae |
| 36 | 2857883421 | Gilliamella apicola N2 | Isolate | Apidae |
| 37 | 2868506828 | Gilliamella apicola App4-10 | Isolate | Apidae |
| 38 | 2870897478 | Gilliamella apicola A-7-12 | Isolate | Apidae |
| 39 | 2515154048 | Candidatus Gilliamella apicola wkB11 | Isolate | Apidae |
| 40 | 2838840603 | Gilliamella apicola A-9-12 | Isolate | Apidae |
| 41 | 2846477985 | Gilliamella apicola Fer1-1 | Isolate | Apidae |
| 42 | 2854127928 | Gilliamella apicola Choc6-1 | Isolate | Apidae |
| 43 | 8088491222 | Gilliamella apicola ESL0178 | Isolate | Apidae |
| 44 | 2505679062 | Candidatus Schmidhempelia bombi Bimp | Isolate | Apidae |
| 45 | 2785510746 | Gilliamella sp. ESL0441 | Isolate | Apidae |
| 46 | 2846485327 | Gilliamella apicola AM4 | Isolate | Apidae |
| 47 | 2849471304 | Gilliamella apicola NO5 | Isolate | Apidae |
| 48 | 2876022486 | Gilliamella apicola A8 | Isolate | Apidae |
| 49 | 2876027665 | Gilliamella apicola P54G | Isolate | Apidae |
| 50 | 3300005721 | Honey bee gut microbiome from Carl Hayden Bee Research Center, Tucson, Arizona, USA - sample 1, colony 176 | Metagenome | Apidae |
| 51 | 2585427711 | Candidatus Schmidhempelia bombi Bimp | Isolate | Apidae |
| 52 | 2854141978 | Gilliamella apicola A-12-12 | Isolate | Apidae |
| 53 | 2868489326 | Gilliamella apicola N10 | Isolate | Apidae |
| 54 | 2868499409 | Gilliamella apicola N-9-4 | Isolate | Apidae |
| 55 | 2870920129 | Gilliamella apicola wkB108 | Isolate | Apidae |
| 56 | 2873651485 | Gilliamella apicola Choc4-2 | Isolate | Apidae |
Scaffolds
| # | Scaffold | Sample | Taxonomy | Length |
|---|---|---|---|---|
| 1 | Ga0074278_152663 | 3300005721 | Bacteria | 96529 |
| 2 | gam1t_NODE_309162_length=96519_GC=36_0_Contigs=2 | 2189573031 | Bacteria | 96529 |
| 3 | gam1t_NODE_585856_length=3772_GC=33_4_Contigs=1 | 2189573031 | Unclassified | 3772 |
| 4 | HBC_ctgsDRAFT_1039457 | 3300000333 | Bacteria | 1156 |
| 5 | Ga0074278_143980 | 3300005721 | Bacteria | 3772 |
Family Sequences
Functional Annotation
| PFAM ID | Name | Description | Start | End | Accuracy |
|---|---|---|---|---|---|
| PF20455 | DUF6708 | Family of unknown function (DUF6708) | 173 | 244 | 0.82 |
Structure & Feature Viewer
| pLDDT | pTM | Quality |
|---|---|---|
| 0.51 | 0.55 | Medium |
Powered by Feature Viewer
Powered by PDBe Molstar
Geographic Distribution
Some samples may be missing due to lack of coordinate data.